Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.3e-187 657.5 326 100.0
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.2e-186 656.4 326 99.7
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 3.8e-177 624.8 326 96.0
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.1e-174 614.4 326 93.6
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.9e-173 612.5 326 93.9
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.0e-146 522.7 326 79.8
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 3.2e-144 515.4 333 77.5
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 4.2e-136 488.4 321 74.5
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 3.1e-131 472.2 324 70.7
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 3.5e-130 468.8 317 71.9
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 4.5e-130 468.4 351 69.2
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 2.5e-128 462.6 315 71.4
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 2.7e-127 459.1 317 70.0
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 6.8e-126 454.5 326 67.8
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 2.0e-125 453.0 319 70.2
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 2.6e-125 452.6 322 70.2
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 9.8e-125 450.7 315 69.2
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.3e-124 450.3 326 69.9
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 2.8e-124 449.1 326 67.2
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.8e-123 446.4 325 69.5
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 2.4e-123 446.0 324 69.8
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 5.4e-123 444.9 311 69.1
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 3.5e-122 442.2 325 68.3
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 3.5e-122 442.2 323 67.8
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 4.5e-122 441.8 319 68.3
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.0e-121 440.7 308 69.5
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.0e-121 438.3 324 67.9
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.0e-121 438.3 324 67.9
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-120 437.2 324 67.6
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 5.5e-120 434.9 316 67.1
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 1.6e-119 433.3 325 66.8
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 2.8e-119 432.6 340 64.7
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 3.0e-118 429.1 316 66.1
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 4.0e-118 428.7 303 69.6
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 1.5e-117 426.8 323 64.1
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 4.4e-117 425.2 308 69.2
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 2.2e-116 422.9 338 63.9
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 3.1e-115 419.1 325 64.9
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 9.2e-115 417.5 318 65.7
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 3.5e-114 415.6 316 66.1
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 3.5e-114 415.6 322 64.6
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.0e-113 414.1 316 64.2
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 6.6e-113 411.4 324 64.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 8.6e-113 411.0 314 65.6
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 3.3e-112 409.1 322 62.7
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 3.3e-112 409.1 325 61.5
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 9.5e-112 407.5 303 67.3
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 1.2e-111 407.1 319 65.2
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.6e-111 406.8 322 62.7
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 2.8e-111 406.0 308 65.3
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 2.8e-111 406.0 320 64.4
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.1e-111 404.8 311 65.3
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.1e-111 404.8 311 65.3
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.1e-111 404.8 311 65.3
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.1e-111 404.8 311 65.3
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.0e-110 404.1 340 62.1
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 1.4e-110 403.7 339 62.2
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 4.0e-110 402.1 312 61.5
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 5.2e-110 401.7 327 60.2
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 6.8e-110 401.4 311 65.9
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.5e-109 400.2 336 61.3
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 7.5e-109 397.9 331 60.1
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 2.9e-108 396.0 323 61.0
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 8.3e-108 394.4 318 63.5
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 8.3e-108 394.4 311 62.4
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 5.4e-107 391.7 323 60.7
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 3.5e-106 389.0 259 75.7
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 7.8e-106 387.9 307 63.5
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 3.9e-105 385.6 315 63.8
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 3.9e-105 385.6 318 62.3
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.6e-105 384.8 302 62.6
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.5e-104 383.6 302 62.3
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 3.3e-104 382.5 315 63.2
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 3.3e-104 382.5 315 63.2
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 4.7e-103 378.6 406 51.5
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 1.4e-102 377.1 225 82.7
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.2e-101 374.0 312 61.5
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.6e-101 372.9 309 59.2
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 3.4e-101 372.5 337 58.8
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 4.9e-100 368.6 259 69.5
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 6.2e-95 351.7 326 57.1
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 1.7e-92 343.6 331 58.3
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 8.1e-87 324.7 306 54.9
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.8e-86 323.6 261 65.1
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 4.0e-86 322.4 319 52.4
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 2.9e-84 316.2 272 60.3
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.1e-83 314.3 239 64.4
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.4e-83 313.9 318 52.2
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 2.3e-81 306.6 290 56.6
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.1e-75 287.7 308 49.4
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.4e-75 287.3 302 49.7
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.3e-73 280.8 323 52.3
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.7e-73 280.4 278 53.2
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.6e-71 273.9 228 59.6
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 4.6e-66 255.8 251 53.0
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.0e-65 254.6 205 66.3
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 5.1e-65 252.3 204 66.2
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.1e-65 252.3 205 62.9
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.5e-64 250.0 202 62.9
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.6e-64 248.1 202 62.9
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-63 246.9 202 62.9
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-63 246.9 205 61.0
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.7e-63 246.1 202 61.9
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 8.1e-63 245.0 222 54.5
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.1e-62 244.6 297 45.5
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 4.9e-60 235.7 241 51.5
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 2.3e-57 226.9 249 48.2
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 5.6e-56 222.2 206 56.3
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-55 220.3 202 57.9
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.7e-50 203.4 205 54.1
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.5e-50 203.0 218 52.8
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.2e-43 179.5 104 80.8
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 5.5e-43 179.1 105 77.1
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.4e-43 178.3 104 79.8
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 3.6e-42 176.4 317 36.0
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.0e-41 174.9 135 64.4
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.3e-41 173.7 133 65.4
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 3.9e-41 172.9 303 37.6
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 1.5e-37 161.0 102 74.5
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.7e-36 157.5 201 42.8
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.9e-36 156.8 103 72.8
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 7.9e-34 148.7 133 61.7
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 3.9e-33 146.4 221 41.2
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 2.2e-31 140.6 286 33.6
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.7e-28 131.0 116 56.9
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 7.4e-24 115.5 62 80.6
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 6.3e-23 112.5 300 29.0
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 3.1e-22 110.2 90 62.2
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 3.1e-22 110.2 90 62.2
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 1.3e-15 88.2 45 82.2
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.3e-07 59.3 51 58.8
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 1.8e-06 57.8 104 43.3


User provided reference genes

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