Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.0e-112 409.1 197 100.0
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-111 406.4 197 99.0
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 8.0e-106 387.1 188 99.5
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 5.2e-105 384.4 188 98.4
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 8.9e-105 383.6 188 97.9
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 2.6e-104 382.1 188 97.3
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.1e-102 376.7 183 98.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 7.8e-101 370.5 193 91.7
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.7e-100 369.4 188 93.6
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 6.6e-100 367.5 188 93.1
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 9.5e-99 363.6 191 90.1
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.2e-98 363.2 188 90.4
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.2e-98 363.2 188 90.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.0e-97 360.1 188 91.5
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.0e-97 360.1 188 91.5
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.4e-97 359.8 188 91.5
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.1e-97 358.6 188 88.8
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.2e-96 356.7 188 88.8
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.6e-96 355.5 187 90.4
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.3e-95 353.2 188 88.3
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.2e-95 352.4 188 89.9
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 3.7e-95 351.7 186 87.6
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 6.4e-95 350.9 186 87.6
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 1.1e-94 350.1 188 87.8
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.4e-94 349.7 188 87.8
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.9e-94 349.4 186 87.1
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.9e-94 349.4 188 88.3
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.4e-94 349.0 188 86.7
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 2.4e-94 349.0 189 88.4
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.4e-94 349.0 186 86.0
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 2.4e-94 349.0 186 86.0
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 3.2e-94 348.6 188 88.8
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 3.2e-94 348.6 188 88.3
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 4.1e-94 348.2 188 87.2
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.4e-94 347.8 188 88.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 9.2e-94 347.1 188 87.2
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 9.2e-94 347.1 188 86.2
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 9.2e-94 347.1 188 87.2
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.6e-93 346.3 188 87.2
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.6e-93 346.3 188 86.2
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.0e-93 345.9 186 85.5
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 2.0e-93 345.9 188 87.2
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.7e-93 345.5 188 86.7
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.7e-93 345.5 188 86.7
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.7e-93 345.5 188 86.7
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 3.5e-93 345.1 188 87.2
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 4.6e-93 344.7 188 86.7
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 4.6e-93 344.7 188 86.7
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 6.0e-93 344.4 188 86.7
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 6.0e-93 344.4 188 85.6
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-92 343.6 188 86.2
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.0e-92 343.6 188 86.2
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.0e-92 343.6 188 86.2
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.0e-92 343.6 188 85.1
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.0e-92 343.6 188 85.1
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.0e-92 343.6 188 85.1
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 86.2
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 86.2
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 86.2
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 86.2
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-92 342.8 174 95.4
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 86.2
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 86.2
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.0e-92 342.0 188 85.1
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.0e-92 341.3 190 86.3
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.0e-92 341.3 190 86.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 6.6e-92 340.9 188 84.6
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.6e-92 340.9 188 85.6
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.6e-92 340.9 188 85.6
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.6
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.9e-91 339.3 188 85.6
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.9e-91 339.3 188 87.8
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 3.3e-91 338.6 188 85.1
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 3.3e-91 338.6 188 85.1
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 3.3e-91 338.6 188 85.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 4.3e-91 338.2 188 85.1
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 4.3e-91 338.2 188 84.6
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 7.3e-91 337.4 188 84.6
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.6e-90 336.3 188 84.0
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.1e-90 335.9 188 83.0
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.1e-90 335.9 188 86.2
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 2.8e-90 335.5 188 84.0
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 2.8e-90 335.5 188 84.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 4.7e-90 334.7 188 84.6
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 8.0e-90 334.0 188 84.0
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-89 333.6 188 84.6
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.8e-89 332.8 188 83.0
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 5.2e-89 331.3 188 83.5
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 6.8e-89 330.9 188 83.5
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.0e-88 329.3 188 84.0
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.6e-88 328.9 188 83.0
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 3.4e-88 328.6 180 86.1
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 5.8e-88 327.8 188 84.0
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 5.8e-88 327.8 189 83.1
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 7.5e-88 327.4 188 83.5
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 7.5e-88 327.4 188 84.0
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.7e-87 326.2 188 82.4
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.2e-87 325.9 188 83.0
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.2e-87 325.9 188 83.0
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 3.7e-87 325.1 188 82.4
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.9e-87 324.7 188 81.4
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-86 323.6 188 81.4
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 5.4e-86 321.2 188 81.4
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.7e-85 318.9 188 82.4
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.7e-85 318.9 188 79.8
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 7.8e-85 317.4 188 80.3
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 7.8e-85 317.4 188 79.8
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.0e-84 315.5 169 85.8
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 5.1e-84 314.7 188 78.7
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 180 81.1
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.5e-83 313.2 188 80.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.9e-83 312.8 188 78.7
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 3.3e-83 312.0 189 79.9
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 7.3e-83 310.8 188 77.7
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 7.3e-83 310.8 188 77.7
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.8e-81 306.2 189 79.9
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 5.2e-81 304.7 189 79.4
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 6.8e-81 304.3 188 78.2
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 2.0e-80 302.8 188 78.7
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.6e-80 302.4 189 78.8
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 7.5e-80 300.8 188 75.5
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.3e-79 300.1 188 77.1
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.3e-79 300.1 189 78.3
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.7e-79 299.7 188 77.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 3.2e-78 295.4 190 75.3
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 3.2e-78 295.4 189 78.3
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 74.7
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 8.6e-76 287.3 188 76.6
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.5e-75 285.8 188 76.6
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.1e-73 280.4 188 70.2
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.4e-73 279.3 195 72.8
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 7.6e-72 274.2 179 73.7
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 9.9e-72 273.9 177 75.1
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 9.9e-72 273.9 188 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.7e-71 273.1 188 65.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.9e-71 271.6 179 72.6
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 6.4e-71 271.2 189 68.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 6.4e-71 271.2 188 68.1
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 6.4e-71 271.2 188 68.1
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 3.5e-69 265.4 181 72.4
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.7e-68 263.1 187 65.8
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 8.7e-68 260.8 187 65.8
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 3.6e-66 255.4 187 64.2
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 8.1e-66 254.2 165 78.8
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 7.1e-62 241.1 188 60.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 5.6e-59 231.5 177 62.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.4e-57 226.1 188 63.8
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.6e-51 204.1 173 65.3
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.8e-49 199.9 121 77.7
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.5e-48 196.8 188 58.5
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.6e-45 186.8 187 49.7
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 3.5e-45 185.7 109 79.8
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 3.9e-44 182.2 123 76.4
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 6.7e-44 181.4 115 73.9
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.3e-39 167.2 85 91.8
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 2.5e-38 162.9 139 57.6
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 5.0e-31 138.7 78 84.6
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 4.3e-27 125.6 91 70.3
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 8.2e-26 121.3 64 84.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 7.4e-11 71.6 35 94.3
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.5e-06 57.4 39 66.7


User provided reference genes

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