Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.1e-69 265.0 134 100.0
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.5e-67 257.3 134 97.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.1e-66 256.5 134 97.0
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.1e-61 238.4 124 97.6
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 5.9e-60 234.2 134 86.6
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.6e-41 172.9 133 63.2
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 4.0e-40 168.3 134 60.4
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.5e-39 166.4 134 59.7
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.6e-39 165.6 130 60.8
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 5.7e-39 164.5 130 60.8
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 2.9e-38 162.2 134 59.7
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 7.0e-37 157.5 134 55.2
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.6e-36 156.4 133 61.7
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.0e-36 156.0 134 55.2
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.3e-35 153.3 127 55.9
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.3e-35 153.3 134 53.7
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.7e-35 152.9 130 56.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.3e-35 152.5 134 56.7
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.9e-35 151.8 130 56.9
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 3.9e-35 151.8 134 57.5
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 6.6e-35 151.0 128 56.2
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 8.6e-35 150.6 134 53.7
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 8.6e-35 150.6 133 57.1
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.1e-34 150.2 130 56.2
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.5e-34 149.8 134 53.7
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.5e-34 149.8 130 56.2
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.5e-34 149.8 130 53.1
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.9e-34 149.4 133 57.9
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 2.5e-34 149.1 133 56.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.5e-34 149.1 133 54.9
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 4.3e-34 148.3 126 56.3
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.3e-34 148.3 134 56.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 4.3e-34 148.3 130 53.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-33 146.7 130 53.8
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 2.1e-33 146.0 130 54.6
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.8e-33 145.6 134 53.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.8e-33 145.6 117 59.0
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 3.6e-33 145.2 130 54.6
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 3.6e-33 145.2 130 53.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 4.7e-33 144.8 133 57.1
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 6.2e-33 144.4 128 52.3
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.2e-33 144.4 134 53.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 6.2e-33 144.4 130 54.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 8.0e-33 144.1 130 53.1
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 8.0e-33 144.1 135 54.8
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.0e-32 143.7 125 55.2
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.0e-32 143.7 130 52.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.4e-32 143.3 125 54.4
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.8e-32 142.9 134 53.7
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.3e-32 142.5 126 52.4
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.3e-32 142.5 129 53.5
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 4.0e-32 141.7 126 54.8
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 4.0e-32 141.7 130 52.3
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 5.2e-32 141.4 130 53.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.2e-32 141.4 128 52.3
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 5.2e-32 141.4 133 51.1
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.8e-32 141.0 134 51.5
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.8e-32 141.0 128 53.1
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 6.8e-32 141.0 130 51.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.5e-31 139.8 128 51.6
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.6e-31 139.0 134 50.7
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 3.4e-31 138.7 128 50.8
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-31 138.7 130 50.8
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 3.4e-31 138.7 131 51.9
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.8e-31 137.9 130 53.1
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.8e-31 137.9 128 50.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 7.5e-31 137.5 128 51.6
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 7.5e-31 137.5 130 50.0
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 9.8e-31 137.1 130 50.8
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 9.8e-31 137.1 128 49.2
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.3e-30 136.7 134 53.7
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.3e-30 136.7 129 48.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-30 136.3 128 51.6
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.7e-30 136.3 128 52.3
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-30 136.3 130 50.8
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.7e-30 136.3 132 50.8
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.7e-30 136.3 128 52.3
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.2e-30 136.0 128 49.2
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.2e-30 136.0 130 50.0
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.9e-30 135.6 134 53.7
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.9e-30 135.6 130 49.2
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.9e-30 135.6 111 59.5
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 3.7e-30 135.2 130 51.5
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.9e-30 134.8 126 50.8
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 6.4e-30 134.4 130 50.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.1e-29 133.7 133 49.6
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-29 133.7 130 47.7
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.1e-29 133.7 133 48.1
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.9e-29 132.9 128 51.6
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.9e-29 132.9 130 47.7
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.9e-29 132.9 130 51.5
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 2.4e-29 132.5 131 46.6
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.4e-29 132.5 133 48.1
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.4e-29 132.5 130 49.2
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-29 132.1 131 49.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 4.1e-29 131.7 131 47.3
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 4.1e-29 131.7 128 50.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.1e-29 131.7 122 50.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 5.4e-29 131.3 131 45.8
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.4e-29 131.3 130 49.2
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 5.4e-29 131.3 134 48.5
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 7.0e-29 131.0 131 46.6
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 9.2e-29 130.6 130 46.9
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 9.2e-29 130.6 130 49.2
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.2e-28 130.2 129 48.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.2e-28 130.2 132 51.5
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.6e-28 129.8 131 49.6
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 2.0e-28 129.4 128 47.7
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-28 129.4 130 46.9
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.0e-28 129.4 129 46.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.7e-28 129.0 128 52.3
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.7e-28 129.0 128 47.7
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.7e-28 129.0 181 40.9
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-28 129.0 130 49.2
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-28 129.0 130 47.7
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.7e-28 129.0 130 50.0
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.6e-28 128.3 133 49.6
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 7.8e-28 127.5 133 47.4
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.8e-28 127.5 129 45.0
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.3e-27 126.7 130 45.4
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.7e-27 126.3 130 49.2
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.7e-27 126.3 112 54.5
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.7e-27 126.3 130 48.5
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-27 126.3 129 46.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.3e-27 125.9 120 53.3
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 6.6e-27 124.4 136 46.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-26 123.6 123 49.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.1e-26 123.6 130 47.7
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 3.3e-26 122.1 130 46.9
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-25 119.8 132 47.7
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.6e-25 119.8 130 47.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.8e-25 119.0 130 46.9
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.8e-25 119.0 130 46.9
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.6e-25 118.6 130 47.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.6e-25 118.6 129 46.5
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 6.2e-25 117.9 105 54.3
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.1e-25 117.5 114 51.8
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.8e-24 116.3 104 54.8
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.3e-24 115.9 128 44.5
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.1e-24 115.5 130 43.1
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.0e-24 115.2 115 47.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.2e-24 114.8 116 49.1
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.5e-23 113.2 83 61.4
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.4e-23 112.1 117 48.7
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.7e-22 109.8 130 43.1
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 2.9e-22 109.0 131 41.2
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.9e-22 108.2 130 42.3
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 3.2e-21 105.5 128 41.4
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.1e-21 104.4 101 52.5
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.6e-20 103.2 126 43.7
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 4.6e-20 101.7 125 44.8
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.0e-20 101.3 130 39.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 4.3e-18 95.1 105 50.5
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.6e-17 93.2 128 41.4
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.6e-17 93.2 130 39.2
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 2.8e-17 92.4 130 39.2
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.6e-17 92.0 131 38.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.2e-17 91.3 131 38.2
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.2e-15 87.0 82 50.0
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-15 87.0 103 45.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.4e-15 85.1 135 39.3
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.9e-14 82.4 65 55.4
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.7e-14 82.0 76 46.1
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.5e-10 70.1 79 44.3
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.3e-10 68.9 76 44.7
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 5.6e-10 68.2 134 35.1
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.4e-07 58.5 91 44.0
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 7.6e-07 57.8 81 46.9
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.7e-06 56.6 47 55.3
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.4e-06 54.7 91 37.4


User provided reference genes

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