Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0884 Fragaria x ananassa HOM05D000835 ORTHO05D017276 1.3e-79 299.7 153 100.0
FAN12G3938 Fragaria x ananassa HOM05D000835 ORTHO05D017276 9.2e-33 144.1 183 53.0
FvH4_3g14510 Fragaria vesca HOM05D000835 ORTHO05D007655 6.6e-31 137.9 168 53.6
FAN11G2664 Fragaria x ananassa HOM05D000835 ORTHO05D007655 6.6e-31 137.9 168 53.6
FAN25G3716 Fragaria x ananassa HOM05D000835 ORTHO05D007655 6.6e-31 137.9 168 53.6
FAN21G3290 Fragaria x ananassa HOM05D000835 ORTHO05D007655 2.5e-30 136.0 168 53.0
FAN16G0727 Fragaria x ananassa HOM05D000835 ORTHO05D007655 5.6e-30 134.8 168 53.0
RcHm_v2.0_Chr6g0274771 Rosa chinensis HOM05D000835 ORTHO05D007655 2.8e-29 132.5 168 52.4
MD10G1213300 Malus domestica HOM05D000835 ORTHO05D007655 1.6e-24 116.7 168 46.4
Prupe.4G129900 Prunus persica HOM05D000835 ORTHO05D007655 2.3e-23 112.8 168 44.6
Cfa009920 Carpinus fangiana HOM05D000835 ORTHO05D007655 1.1e-22 110.5 158 48.1
Haze_23278 Corylus avellana HOM05D000835 ORTHO05D007655 1.1e-22 110.5 158 48.1
Sabra09G0120400 Salix brachista HOM05D000835 ORTHO05D007655 1.9e-22 109.8 168 44.0
Nn7g38301 Nelumbo nucifera HOM05D000835 ORTHO05D007655 4.3e-22 108.6 168 44.0
Potri.009G152500 Populus trichocarpa HOM05D000835 ORTHO05D007655 4.3e-22 108.6 168 43.5
CiPaw.13G147400 Carya illinoinensis HOM05D000835 ORTHO05D007655 9.5e-22 107.5 158 46.8
CANSAT54G0347 Cannabis sativa HOM05D000835 ORTHO05D007655 1.2e-21 107.1 169 43.2
HanXRQChr08g0217071 Helianthus annuus HOM05D000835 ORTHO05D007655 1.2e-21 107.1 168 43.5
Nn6g34584 Nelumbo nucifera HOM05D000835 ORTHO05D007655 1.2e-21 107.1 168 43.5
TWI53G1197 Tripterygium wilfordii HOM05D000835 ORTHO05D007655 1.2e-21 107.1 168 44.0
EL10Ac7g16262 Beta vulgaris HOM05D000835 ORTHO05D007655 1.6e-21 106.7 168 42.9
Aqoxy2G02907 Aquilegia oxysepala HOM05D000835 ORTHO05D007655 2.1e-21 106.3 168 42.3
AUR62001583 Chenopodium quinoa HOM05D000835 ORTHO05D007655 2.1e-21 106.3 168 41.7
AUR62020200 Chenopodium quinoa HOM05D000835 ORTHO05D007655 2.1e-21 106.3 168 41.7
VMungo0647G1181 Vigna mungo HOM05D000835 ORTHO05D007655 2.1e-21 106.3 158 46.2
CDE07G0289 Ceratophyllum demersum HOM05D000835 ORTHO05D007655 2.8e-21 105.9 168 43.5
Lalb_Chr11g0073081 Lupinus albus HOM05D000835 ORTHO05D007655 2.8e-21 105.9 158 46.2
Rhsim08G0237400 Rhododendron simsii HOM05D000835 ORTHO05D007655 3.6e-21 105.5 168 42.9
COL.COLO4_14020 Corchorus olitorius HOM05D000835 ORTHO05D007655 4.7e-21 105.1 168 41.7
Thhalv10019976m.g Eutrema salsugineum HOM05D000835 ORTHO05D007655 6.2e-21 104.8 168 41.7
Phvul.003G003900 Phaseolus vulgaris HOM05D000835 ORTHO05D007655 6.2e-21 104.8 158 45.6
Gohir.D12G234800 Gossypium hirsutum HOM05D000835 ORTHO05D007655 8.1e-21 104.4 168 41.1
Gorai.008G251100 Gossypium raimondii HOM05D000835 ORTHO05D007655 8.1e-21 104.4 168 41.7
PGR102G2314 Punica granatum HOM05D000835 ORTHO05D007655 8.1e-21 104.4 158 45.6
AL3G37390 Arabidopsis lyrata HOM05D000835 ORTHO05D007655 1.1e-20 104.0 168 41.7
Cc01_g07990 Coffea canephora HOM05D000835 ORTHO05D007655 1.1e-20 104.0 168 42.9
Oeu051478.1 Olea europaea HOM05D000835 ORTHO05D007655 1.1e-20 104.0 168 42.3
TAR374G1323 Trochodendron aralioides HOM05D000835 ORTHO05D007655 1.1e-20 104.0 158 46.8
CsaV3_7G021670 Cucumis sativus L. HOM05D000835 ORTHO05D007655 1.4e-20 103.6 158 46.2
Duzib147G1214 Durio zibethinus HOM05D000835 ORTHO05D007655 1.4e-20 103.6 168 41.1
QL01p016405 Quercus lobata HOM05D000835 ORTHO05D007655 1.4e-20 103.6 158 46.2
CSS0030129 Camellia sinensis var. sinensis HOM05D000835 ORTHO05D007655 1.8e-20 103.2 168 42.3
Carub.0003s2314 Capsella rubella HOM05D000835 ORTHO05D007655 1.8e-20 103.2 168 41.7
Nitab4.5_0002426g0040 Nicotiana tabacum HOM05D000835 ORTHO05D007655 1.8e-20 103.2 168 41.7
ClCG09G010670 Citrullus lanatus HOM05D000835 ORTHO05D007655 2.3e-20 102.8 167 42.5
Eucgr.B02912 Eucalyptus grandis HOM05D000835 ORTHO05D007655 2.3e-20 102.8 168 42.9
Glyma.09G283700 Glycine max HOM05D000835 ORTHO05D007655 2.3e-20 102.8 158 43.7
Glyma.19G111600 Glycine max HOM05D000835 ORTHO05D007655 2.3e-20 102.8 158 43.7
Hma1.2p1_1811F.1_g303580 Hydrangea macrophylla HOM05D000835 ORTHO05D007655 2.3e-20 102.8 168 42.9
Lsat_1_v5_gn_8_25560 Lactuca sativa HOM05D000835 ORTHO05D007655 2.3e-20 102.8 168 42.3
SalBow3G1027 Salvia bowleyana HOM05D000835 ORTHO05D007655 2.3e-20 102.8 168 42.9
Aa31LG8G9480 Aethionema arabicum HOM05D000835 ORTHO05D007655 3.1e-20 102.4 168 41.7
Ciclev10030601m.g Citrus clementina HOM05D000835 ORTHO05D007655 3.1e-20 102.4 158 44.3
AT3G22980 Arabidopsis thaliana HOM05D000835 ORTHO05D007655 6.8e-20 101.3 168 41.1
MELO3C013183.2 Cucumis melo HOM05D000835 ORTHO05D007655 6.8e-20 101.3 158 45.6
Sp3g20670 Schrenkiella parvula HOM05D000835 ORTHO05D007655 6.8e-20 101.3 168 41.1
arahy.Tifrunner.gnm1.ann1.0BXH0B Arachis hypogaea HOM05D000835 ORTHO05D007655 8.9e-20 100.9 158 44.9
arahy.Tifrunner.gnm1.ann1.3FQW2E Arachis hypogaea HOM05D000835 ORTHO05D007655 8.9e-20 100.9 158 44.9
Sed0018542 Sechium edule HOM05D000835 ORTHO05D007655 8.9e-20 100.9 168 41.7
CARHR098920 Cardamine hirsuta HOM05D000835 ORTHO05D007655 1.2e-19 100.5 168 41.1
Psat4g027720 Pisum sativum HOM05D000835 ORTHO05D007655 1.2e-19 100.5 158 44.9
SMO367G1260 Selaginella moellendorffii HOM05D000835 ORTHO05D007655 1.2e-19 100.5 168 40.5
GSVIVG01026440001 Vitis vinifera HOM05D000835 ORTHO05D007655 1.2e-19 100.5 159 44.0
Manes.11G105000 Manihot esculenta HOM05D000835 ORTHO05D007655 1.5e-19 100.1 158 44.3
Nitab4.5_0002498g0060 Nicotiana tabacum HOM05D000835 ORTHO05D007655 1.5e-19 100.1 168 41.1
unitig_27.g25353 Utricularia gibba HOM05D000835 ORTHO05D007655 1.5e-19 100.1 168 41.1
CAN.G742.24 Capsicum annuum HOM05D000835 ORTHO05D007655 2.0e-19 99.8 168 41.1
Migut.G00793 Erythranthe guttata HOM05D000835 ORTHO05D007655 2.0e-19 99.8 168 41.1
SHI25283 Sapria himalayana HOM05D000835 ORTHO05D007655 2.0e-19 99.8 168 39.3
Sc11g0003980 Simmondsia chinensis HOM05D000835 ORTHO05D007655 2.0e-19 99.8 158 44.9
Solyc11g071770.1 Solanum lycopersicum HOM05D000835 ORTHO05D007655 2.6e-19 99.4 168 41.1
Sopen11g029440 Solanum pennellii HOM05D000835 ORTHO05D007655 2.6e-19 99.4 168 41.1
PGSC0003DMG400002992 Solanum tuberosum HOM05D000835 ORTHO05D007655 2.6e-19 99.4 168 41.1
ATR0697G100 Amborella trichopoda HOM05D000835 ORTHO05D017276 3.4e-19 99.0 158 43.0
MSTRG.10400 Avicennia marina HOM05D000835 ORTHO05D007655 3.4e-19 99.0 159 43.4
Lj1g0017347 Lotus japonicus HOM05D000835 ORTHO05D007655 3.4e-19 99.0 158 44.3
TPR.G14630 Trifolium pratense HOM05D000835 ORTHO05D007655 3.4e-19 99.0 158 44.3
Atru.chr6.1375 Acer truncatum HOM05D000835 ORTHO05D007655 7.5e-19 97.8 168 39.9
AagrBONN_evm.TU.Sc2ySwM_362.224 Anthoceros agrestis HOM05D000835 ORTHO05D007655 7.5e-19 97.8 168 38.1
Dinv32150 Davidia involucrata HOM05D000835 ORTHO05D007655 7.5e-19 97.8 160 43.1
Lj2P836T4 Lonicera japonica HOM05D000835 ORTHO05D007655 7.5e-19 97.8 168 41.1
PSO210G1464 Papaver somniferum HOM05D000835 ORTHO05D007655 9.8e-19 97.4 168 40.5
PSO238G0019 Papaver somniferum HOM05D000835 ORTHO05D007655 9.8e-19 97.4 168 40.5
Peaxi162Scf00259g00019 Petunia axillaris HOM05D000835 ORTHO05D007655 9.8e-19 97.4 168 40.5
SGA_v2.0_scaffold12G06248 Striga asiatica HOM05D000835 ORTHO05D007655 9.8e-19 97.4 168 41.1
DCAR_001041 Daucus carota HOM05D000835 ORTHO05D007655 1.7e-18 96.7 168 40.5
Ah.08g222340 Amaranthus hybridus HOM05D000835 ORTHO05D007655 2.2e-18 96.3 168 40.5
Ca_12421_v3 Cicer arietinum L. HOM05D000835 ORTHO05D007655 2.2e-18 96.3 158 43.7
Medtr4g119340 Medicago truncatula HOM05D000835 ORTHO05D007655 2.2e-18 96.3 168 39.3
Os03g0650700 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D007655 2.2e-18 96.3 158 41.1
BcaB06g26420 Brassica carinata HOM05D000835 ORTHO05D007655 6.4e-18 94.7 168 39.3
HPP92_017079 Vanilla planifolia HOM05D000835 ORTHO05D007655 6.4e-18 94.7 168 39.3
ECA233G2238 Erigeron canadensis HOM05D000835 ORTHO05D007655 1.1e-17 94.0 168 39.9
BcaC05g27990 Brassica carinata HOM05D000835 ORTHO05D007655 3.2e-17 92.4 169 39.6
A05p25720 Brassica napus HOM05D000835 ORTHO05D007655 3.2e-17 92.4 169 39.6
C05p40010 Brassica napus HOM05D000835 ORTHO05D007655 3.2e-17 92.4 169 39.6
BolC5t32747H Brassica oleracea HOM05D000835 ORTHO05D007655 3.2e-17 92.4 169 39.6
BraA05t21453Z Brassica rapa HOM05D000835 ORTHO05D007655 3.2e-17 92.4 169 39.6
SMO361G0467 Selaginella moellendorffii HOM05D000835 ORTHO05D007655 9.2e-17 90.9 166 37.3
Pp3c17_21830 Physcomitrium patens HOM05D000835 ORTHO05D007655 6.0e-16 88.2 159 38.4
SEGI_39423 Sequoiadendron giganteum HOM05D000835 ORTHO05D007655 6.0e-16 88.2 168 36.3
Dinv18870 Davidia involucrata HOM05D000835 ORTHO05D007655 7.8e-16 87.8 168 39.3
MBI04_g45344_MAGBIO Magnolia biondii HOM05D000835 ORTHO05D007655 2.3e-15 86.3 167 40.1
Zm00001eb052970 Zea mays HOM05D000835 ORTHO05D007655 3.0e-15 85.9 159 40.3
Mapoly0095s0055 Marchantia polymorpha HOM05D000835 ORTHO05D007655 1.6e-13 80.1 159 37.1
CBR_g53556 Chara braunii HOM05D000835 ORTHO05D007655 3.1e-12 75.9 181 35.9
Cre13.g564950 Chlamydomonas reinhardtii HOM05D000835 ORTHO05D007655 1.2e-11 73.9 187 34.8
Cpa.g.sc103.46 Carica papaya HOM05D000835 ORTHO05D007655 1.5e-11 73.6 147 40.8
PRCOL_00005628 Prasinoderma coloniale HOM05D000835 ORTHO05D007655 3.8e-10 68.9 163 35.6
MCO13G577 Micromonas commoda HOM05D000835 ORTHO05D007655 6.4e-10 68.2 174 33.3
Os02g0543300 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D007655 1.1e-09 67.4 164 36.0
Lj2A837G8 Lonicera japonica HOM05D000835 ORTHO05D007655 1.0e-07 60.8 138 33.3
Gohir.A12G232600 Gossypium hirsutum HOM05D000835 ORTHO05D007655 3.0e-07 59.3 138 36.2
unitig_28.g29436 Utricularia gibba HOM05D000835 ORTHO05D007655 3.9e-07 58.9 138 37.0
A01p21380 Brassica napus HOM05D000835 ORTHO05D007655 4.3e-06 55.5 137 35.8


User provided reference genes

Program Settings