Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 0.0e+00 1131.3 581 100.0
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 0.0e+00 1090.1 583 97.1
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 0.0e+00 1080.1 586 96.1
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 0.0e+00 1077.8 594 95.1
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 4.0e-312 1074.7 599 94.2
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 8.0e-287 989.9 590 88.6
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 1.1e-246 856.7 606 76.7
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 1.2e-231 806.6 623 70.8
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 4.0e-214 748.4 647 63.2
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 4.0e-214 748.4 608 66.4
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 5.3e-214 748.0 636 64.5
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.2e-212 742.7 639 62.4
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 4.9e-212 741.5 649 64.3
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 5.5e-211 738.0 621 65.7
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 7.1e-211 737.6 615 65.4
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 1.6e-210 736.5 598 66.4
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 6.0e-210 734.6 645 62.2
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 1.0e-209 733.8 641 62.9
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 5.1e-209 731.5 680 60.3
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 6.7e-209 731.1 613 64.8
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 4.3e-208 728.4 626 64.7
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 5.6e-208 728.0 650 62.2
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.3e-207 726.9 618 66.7
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 1.6e-207 726.5 616 63.6
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 4.8e-207 724.9 637 61.9
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 6.9e-206 721.1 602 64.1
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 1.0e-204 717.2 611 63.0
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 1.7e-204 716.5 635 63.0
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 1.7e-204 716.5 615 62.9
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 8.4e-204 714.1 613 63.6
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 1.4e-203 713.4 653 62.6
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 3.5e-202 708.8 606 64.5
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.1e-200 703.7 544 68.0
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 2.5e-200 702.6 647 60.4
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 4.3e-200 701.8 591 64.8
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 5.7e-200 701.4 624 62.3
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 3.7e-199 698.7 619 63.8
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 4.1e-198 695.3 649 59.9
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 9.0e-198 694.1 614 62.4
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-197 693.0 650 60.3
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.0e-197 693.0 644 59.5
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 2.6e-197 692.6 618 63.8
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 5.9e-197 691.4 611 63.3
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 9.3e-195 684.1 425 80.0
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.6e-194 682.2 644 60.2
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 1.0e-193 680.6 656 59.3
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 9.7e-192 674.1 582 63.9
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 4.8e-191 671.8 613 62.2
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 1.8e-190 669.8 611 61.0
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.3e-190 668.3 641 58.3
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 5.9e-189 664.8 620 61.8
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 1.3e-188 663.7 604 60.4
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 4.7e-186 655.2 491 68.0
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 4.7e-186 655.2 609 62.4
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 3.3e-184 649.0 635 58.3
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 4.4e-184 648.7 607 59.5
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 6.3e-183 644.8 537 67.2
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 6.3e-183 644.8 613 59.1
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 6.3e-183 644.8 642 57.9
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 5.3e-182 641.7 403 77.2
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 2.5e-179 632.9 397 78.3
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 4.2e-179 632.1 623 57.0
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 3.6e-178 629.0 628 56.7
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 8.0e-178 627.9 632 55.4
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 1.4e-177 627.1 636 55.7
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 3.9e-177 625.5 636 55.7
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.3e-175 620.5 608 55.8
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.1e-174 617.5 557 61.8
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.4e-174 617.1 623 56.0
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 7.7e-173 611.3 603 55.7
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 1.7e-172 610.1 572 59.8
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.0e-172 608.6 549 61.9
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 4.2e-171 605.5 633 53.7
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 1.2e-170 604.0 421 71.3
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 2.7e-170 602.8 634 53.8
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 6.1e-170 601.7 653 53.3
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 5.7e-168 595.1 489 66.1
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 1.4e-166 590.5 415 71.8
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 1.8e-166 590.1 598 55.5
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 3.5e-165 585.9 654 53.1
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.7e-162 576.2 612 55.7
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 3.7e-159 565.8 411 67.6
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 6.3e-159 565.1 603 51.1
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 2.4e-158 563.1 484 63.2
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 5.4e-158 562.0 615 53.2
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 4.9e-151 538.9 514 59.1
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 7.0e-150 535.0 596 55.0
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 2.3e-145 520.0 606 50.8
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 5.2e-145 518.8 597 52.4
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 1.5e-144 517.3 591 52.6
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 9.8e-144 514.6 365 70.7
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 3.7e-143 512.7 561 52.9
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 2.0e-141 506.9 366 69.9
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 1.8e-137 493.8 519 55.5
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 2.1e-133 480.3 451 60.3
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 3.9e-132 476.1 501 54.5
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 3.3e-131 473.0 410 65.9
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.2e-130 471.1 436 54.6
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 3.1e-129 466.5 441 57.8
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 9.5e-123 444.9 457 49.9
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 9.9e-120 434.9 557 46.7
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.2e-118 429.5 745 39.7
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 2.7e-117 426.8 341 63.3
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.5e-115 421.0 285 72.3
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 3.3e-115 419.9 567 45.9
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.7e-111 407.5 527 50.1
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 9.6e-107 391.7 527 48.0
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 2.0e-104 384.0 287 69.0
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 3.7e-90 336.7 339 51.0
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 1.0e-87 328.6 405 50.1
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 4.9e-87 326.2 448 41.7
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 7.1e-86 322.4 191 80.6
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 9.7e-83 312.0 383 52.2
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 2.8e-82 310.5 253 64.0
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 2.4e-81 307.4 400 50.5
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.5e-80 304.7 384 50.5
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 7.7e-80 302.4 309 52.8
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 3.9e-76 290.0 171 80.1
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 4.5e-72 276.6 535 40.0
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 1.0e-71 275.4 332 47.3
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 2.2e-71 274.2 161 78.9
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.4e-70 271.6 321 52.0
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 8.2e-66 255.8 161 73.9
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 1.4e-65 255.0 188 69.1
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 2.6e-64 250.8 160 73.8
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 1.2e-61 241.9 124 95.2
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 2.6e-56 224.2 181 61.9
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 6.1e-53 213.0 127 82.7
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.4e-52 211.8 309 48.2
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 2.6e-43 181.0 183 56.3
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.5e-43 179.5 127 72.4
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.4e-41 174.5 161 61.5
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 9.1e-41 172.6 142 63.4
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 6.6e-39 166.4 119 70.6
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.9e-38 164.9 382 30.9
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.3e-38 164.1 111 73.9
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 4.2e-38 163.7 419 28.6
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 1.8e-36 158.3 280 39.3
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 7.5e-35 152.9 149 57.0
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 2.2e-34 151.4 239 39.3
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 2.2e-34 151.4 239 39.3
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 2.7e-32 144.4 88 83.0
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 1.8e-28 131.7 497 23.1
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 3.1e-28 131.0 241 39.4
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 1.4e-25 122.1 70 91.4
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 3.2e-25 120.9 69 78.3
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 3.5e-24 117.5 92 65.2
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-22 111.3 84 65.5
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-22 111.3 84 65.5
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-22 111.3 84 65.5
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-22 111.3 84 65.5
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 9.5e-22 109.4 76 71.1
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 1.2e-21 109.0 69 71.0
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.1e-20 105.9 76 68.4
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.4e-20 105.5 83 72.3
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 1.5e-19 102.1 298 32.9
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.4e-17 95.5 54 83.3
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 4.1e-17 94.0 160 40.6
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 1.6e-16 92.0 175 36.6
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.1e-15 87.0 237 36.3
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 3.3e-14 84.3 61 68.9
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 6.2e-13 80.1 70 58.6
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.3e-12 78.2 94 48.9
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.2e-12 77.0 45 84.4
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 8.9e-12 76.3 48 79.2
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 1.3e-10 72.4 39 84.6
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 1.7e-10 72.0 47 74.5
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 1.7e-10 72.0 40 87.5
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 4.9e-10 70.5 82 47.6
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 1.4e-09 68.9 46 60.9
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 1.4e-09 68.9 46 60.9
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 4.1e-09 67.4 46 58.7
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.6e-08 65.5 200 31.5
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 2.1e-08 65.1 36 77.8
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 1.3e-07 62.4 51 66.7
RcHm_v2.0_Chr5g0078431 Rosa chinensis HOM05D003836 ORTHO05D004556 3.3e-06 57.8 27 96.3


User provided reference genes

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