Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0387 Fragaria x ananassa HOM05D003168 ORTHO05D003590 6.3e-32 140.2 73 100.0
FAN07G0893 Fragaria x ananassa HOM05D003168 ORTHO05D003590 3.8e-21 104.4 54 96.3
FAN12G4144 Fragaria x ananassa HOM05D003168 ORTHO05D003590 3.8e-21 104.4 54 96.3
FAN17G2428 Fragaria x ananassa HOM05D003168 ORTHO05D003590 3.8e-21 104.4 54 96.3
RcHm_v2.0_Chr4g0399831 Rosa chinensis HOM05D003168 ORTHO05D003590 4.0e-18 94.4 54 83.3
MD13G1243400 Malus domestica HOM05D003168 ORTHO05D003590 1.6e-14 82.4 54 70.4
Prupe.1G076800 Prunus persica HOM05D003168 ORTHO05D003590 2.7e-14 81.6 57 66.7
MD16G1249900 Malus domestica HOM05D003168 ORTHO05D003590 3.3e-12 74.7 54 66.7
Phvul.009G236900 Phaseolus vulgaris HOM05D003168 ORTHO05D003590 1.8e-10 68.9 51 62.7
VMungo1309G2777 Vigna mungo HOM05D003168 ORTHO05D003590 1.8e-10 68.9 51 62.7
arahy.Tifrunner.gnm1.ann1.XZH3XT Arachis hypogaea HOM05D003168 ORTHO05D003590 2.3e-10 68.6 55 63.6
Lalb_Chr08g0231771 Lupinus albus HOM05D003168 ORTHO05D003590 3.1e-10 68.2 58 60.3
arahy.Tifrunner.gnm1.ann1.7LRL61 Arachis hypogaea HOM05D003168 ORTHO05D003590 4.0e-10 67.8 51 66.7
Haze_22009 Corylus avellana HOM05D003168 ORTHO05D003590 4.0e-10 67.8 65 52.3
Ciclev10008645m.g Citrus clementina HOM05D003168 ORTHO05D003590 8.9e-10 66.6 43 69.8
Cpa.g.sc95.18 Carica papaya HOM05D003168 ORTHO05D003590 1.2e-09 66.2 56 55.4
Hund09055 Selenicereus undatus HOM05D003168 ORTHO05D003590 2.0e-09 65.5 48 60.4
Dinv41167 Davidia involucrata HOM05D003168 ORTHO05D003590 2.6e-09 65.1 52 57.7
Lalb_Chr08g0231871 Lupinus albus HOM05D003168 ORTHO05D003590 2.6e-09 65.1 51 60.8
TAR383G0299 Trochodendron aralioides HOM05D003168 ORTHO05D003590 2.6e-09 65.1 41 73.2
Duzib168G2272 Durio zibethinus HOM05D003168 ORTHO05D003590 3.4e-09 64.7 52 51.9
arahy.Tifrunner.gnm1.ann1.U4H6SI Arachis hypogaea HOM05D003168 ORTHO05D003590 4.4e-09 64.3 53 56.6
arahy.Tifrunner.gnm1.ann1.WCZ5FF Arachis hypogaea HOM05D003168 ORTHO05D003590 4.4e-09 64.3 53 56.6
Medtr2g037790 Medicago truncatula HOM05D003168 ORTHO05D003590 4.4e-09 64.3 57 57.9
Nitab4.5_0002365g0020 Nicotiana tabacum HOM05D003168 ORTHO05D003590 4.4e-09 64.3 58 56.9
arahy.Tifrunner.gnm1.ann1.SZ0P5Q Arachis hypogaea HOM05D003168 ORTHO05D003590 5.8e-09 63.9 50 66.0
Hma1.2p1_0022F.1_g014560 Hydrangea macrophylla HOM05D003168 ORTHO05D003590 5.8e-09 63.9 43 65.1
TWI34G0203 Tripterygium wilfordii HOM05D003168 ORTHO05D003590 5.8e-09 63.9 51 58.8
Solyc07g008920.4 Solanum lycopersicum HOM05D003168 ORTHO05D003590 7.5e-09 63.5 44 68.2
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 7.5e-09 63.5 44 68.2
Cc06_g21780 Coffea canephora HOM05D003168 ORTHO05D003590 9.8e-09 63.2 41 70.7
Glyma.09G058900 Glycine max HOM05D003168 ORTHO05D003590 9.8e-09 63.2 57 49.1
Potri.006G076400 Populus trichocarpa HOM05D003168 ORTHO05D003590 9.8e-09 63.2 58 53.4
Carub.0007s1509 Capsella rubella HOM05D003168 ORTHO05D003590 1.3e-08 62.8 50 56.0
Sed0017714 Sechium edule HOM05D003168 ORTHO05D003590 1.3e-08 62.8 56 57.1
Sc14g0001440 Simmondsia chinensis HOM05D003168 ORTHO05D003590 1.3e-08 62.8 51 58.8
Lsat_1_v5_gn_5_82861 Lactuca sativa HOM05D003168 ORTHO05D003590 1.7e-08 62.4 49 57.1
QL02p047700 Quercus lobata HOM05D003168 ORTHO05D003590 1.7e-08 62.4 50 60.0
Lj4g0011458 Lotus japonicus HOM05D003168 ORTHO05D003590 2.2e-08 62.0 56 53.6
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 2.2e-08 62.0 68 44.1
Gorai.003G154900 Gossypium raimondii HOM05D003168 ORTHO05D003590 2.9e-08 61.6 43 62.8
Nn8g40875 Nelumbo nucifera HOM05D003168 ORTHO05D003590 2.9e-08 61.6 40 75.0
TPR.G30785 Trifolium pratense HOM05D003168 ORTHO05D003590 2.9e-08 61.6 54 55.6
GSVIVG01010873001 Vitis vinifera HOM05D003168 ORTHO05D003590 2.9e-08 61.6 43 58.1
CiPaw.07G196200 Carya illinoinensis HOM05D003168 ORTHO05D003590 3.7e-08 61.2 52 53.8
Eucgr.B01130 Eucalyptus grandis HOM05D003168 ORTHO05D003590 3.7e-08 61.2 45 60.0
Glyma.15G165000 Glycine max HOM05D003168 ORTHO05D003590 3.7e-08 61.2 54 51.9
Peaxi162Scf00014g00101 Petunia axillaris HOM05D003168 ORTHO05D003590 3.7e-08 61.2 46 63.0
Peaxi162Scf00152g00412 Petunia axillaris HOM05D003168 ORTHO05D003590 3.7e-08 61.2 46 63.0
Peaxi162Scf00201g00015 Petunia axillaris HOM05D003168 ORTHO05D003590 3.7e-08 61.2 46 63.0
Peaxi162Scf00915g00036 Petunia axillaris HOM05D003168 ORTHO05D003590 3.7e-08 61.2 52 53.8
PGSC0003DMG400028739 Solanum tuberosum HOM05D003168 ORTHO05D003590 3.7e-08 61.2 44 65.9
ClCG06G013550 Citrullus lanatus HOM05D003168 ORTHO05D003590 4.9e-08 60.8 56 57.1
Phvul.003G141900 Phaseolus vulgaris HOM05D003168 ORTHO05D003590 4.9e-08 60.8 56 51.8
Eucgr.C02223 Eucalyptus grandis HOM05D003168 ORTHO05D003590 6.4e-08 60.5 45 60.0
Thecc.09G184500 Theobroma cacao HOM05D003168 ORTHO05D003590 6.4e-08 60.5 49 53.1
CiPaw.08G033300 Carya illinoinensis HOM05D003168 ORTHO05D003590 8.3e-08 60.1 48 60.4
Dinv25431 Davidia involucrata HOM05D003168 ORTHO05D003590 8.3e-08 60.1 46 63.0
Gohir.D03G147400 Gossypium hirsutum HOM05D003168 ORTHO05D003590 8.3e-08 60.1 43 60.5
Atru.chr7.796 Acer truncatum HOM05D003168 ORTHO05D003590 1.1e-07 59.7 52 50.0
HanXRQChr10g0308811 Helianthus annuus HOM05D003168 ORTHO05D003590 1.1e-07 59.7 52 51.9
Lalb_Chr13g0300061 Lupinus albus HOM05D003168 ORTHO05D003590 1.1e-07 59.7 46 69.6
Potri.018G143600 Populus trichocarpa HOM05D003168 ORTHO05D003590 1.1e-07 59.7 52 50.0
CARHR271040 Cardamine hirsuta HOM05D003168 ORTHO05D003590 1.4e-07 59.3 50 52.0
AUR62021343 Chenopodium quinoa HOM05D003168 ORTHO05D003590 1.4e-07 59.3 47 55.3
MELO3C017434.2 Cucumis melo HOM05D003168 ORTHO05D003590 1.4e-07 59.3 56 55.4
CsaV3_1G031820 Cucumis sativus L. HOM05D003168 ORTHO05D003590 1.4e-07 59.3 56 55.4
Lalb_Chr12g0199571 Lupinus albus HOM05D003168 ORTHO05D003590 1.4e-07 59.3 54 55.6
THA.LOC104811778 Tarenaya hassleriana HOM05D003168 ORTHO05D003590 1.4e-07 59.3 52 50.0
Aqoxy7G02763 Aquilegia oxysepala HOM05D003168 ORTHO05D003590 1.9e-07 58.9 41 63.4
EL10Ac8g18328 Beta vulgaris HOM05D003168 ORTHO05D003590 1.9e-07 58.9 44 61.4
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 1.9e-07 58.9 54 50.0
Sabra06G0057300 Salix brachista HOM05D003168 ORTHO05D003590 1.9e-07 58.9 53 52.8
MSTRG.26538 Avicennia marina HOM05D003168 ORTHO05D003590 3.2e-07 58.2 42 64.3
HanXRQChr12g0358511 Helianthus annuus HOM05D003168 ORTHO05D003590 3.2e-07 58.2 48 54.2
Aa31LG3G13130 Aethionema arabicum HOM05D003168 ORTHO05D003590 4.1e-07 57.8 50 54.0
Glyma.09G058800 Glycine max HOM05D003168 ORTHO05D003590 4.1e-07 57.8 55 54.5
Glyma.17G060000 Glycine max HOM05D003168 ORTHO05D003590 4.1e-07 57.8 45 62.2
Lj6g0018522 Lotus japonicus HOM05D003168 ORTHO05D003590 4.1e-07 57.8 52 53.8
Sed0027540 Sechium edule HOM05D003168 ORTHO05D003590 4.1e-07 57.8 55 56.4
BcaC09g50737 Brassica carinata HOM05D003168 ORTHO05D003590 5.4e-07 57.4 50 52.0
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 5.4e-07 57.4 50 52.0
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 5.4e-07 57.4 50 52.0
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 5.4e-07 57.4 50 52.0
Thhalv10027226m.g Eutrema salsugineum HOM05D003168 ORTHO05D003590 5.4e-07 57.4 50 52.0
Phvul.003G142000 Phaseolus vulgaris HOM05D003168 ORTHO05D003590 5.4e-07 57.4 51 58.8
BcaB08g36086 Brassica carinata HOM05D003168 ORTHO05D003590 7.0e-07 57.0 54 50.0
Glyma.13G100000 Glycine max HOM05D003168 ORTHO05D003590 7.0e-07 57.0 56 50.0
Zm00001eb174710 Zea mays HOM05D003168 ORTHO05D003590 7.0e-07 57.0 50 56.0
BcaNung04102 Brassica carinata HOM05D003168 ORTHO05D003590 9.2e-07 56.6 54 50.0
CANSAT11G0244 Cannabis sativa HOM05D003168 ORTHO05D003590 9.2e-07 56.6 55 54.5
Thhalv10025441m.g Eutrema salsugineum HOM05D003168 ORTHO05D003590 9.2e-07 56.6 52 50.0
Manes.06G020500 Manihot esculenta HOM05D003168 ORTHO05D003590 9.2e-07 56.6 52 48.1
Sp7g23880 Schrenkiella parvula HOM05D003168 ORTHO05D003590 9.2e-07 56.6 50 52.0
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 1.2e-06 56.2 53 45.3
arahy.Tifrunner.gnm1.ann1.US1IAN Arachis hypogaea HOM05D003168 ORTHO05D003590 1.2e-06 56.2 52 51.9
CSS0019142 Camellia sinensis var. sinensis HOM05D003168 ORTHO05D003590 1.2e-06 56.2 61 49.2
AT5G57240 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 1.6e-06 55.8 43 55.8
MSTRG.10446 Avicennia marina HOM05D003168 ORTHO05D003590 1.6e-06 55.8 53 54.7
Glyma.17G059900 Glycine max HOM05D003168 ORTHO05D003590 1.6e-06 55.8 56 48.2
Lalb_Chr23g0276831 Lupinus albus HOM05D003168 ORTHO05D003590 1.6e-06 55.8 45 60.0
Actinidia01284 Actinidia chinensis HOM05D003168 ORTHO05D003590 2.0e-06 55.5 58 55.2
Os08g0517700 Oryza sativa ssp. japonica HOM05D003168 ORTHO05D003590 2.0e-06 55.5 46 60.9
CARHR233320 Cardamine hirsuta HOM05D003168 ORTHO05D003590 2.7e-06 55.1 50 52.0
Psat0ss2585g0640 Pisum sativum HOM05D003168 ORTHO05D003590 2.7e-06 55.1 47 57.4
HPP92_010284 Vanilla planifolia HOM05D003168 ORTHO05D003590 2.7e-06 55.1 49 53.1
HPP92_010403 Vanilla planifolia HOM05D003168 ORTHO05D003590 2.7e-06 55.1 55 49.1
BcaC04g19985 Brassica carinata HOM05D003168 ORTHO05D003590 3.5e-06 54.7 50 48.0
AUR62033257 Chenopodium quinoa HOM05D003168 ORTHO05D003590 3.5e-06 54.7 61 45.9
THA.LOC104813510 Tarenaya hassleriana HOM05D003168 ORTHO05D003590 3.5e-06 54.7 50 48.0
unitig_578.g16065 Utricularia gibba HOM05D003168 ORTHO05D003590 3.5e-06 54.7 45 55.6
Migut.L01890 Erythranthe guttata HOM05D003168 ORTHO05D003590 4.6e-06 54.3 47 53.2
Glyma.15G164900 Glycine max HOM05D003168 ORTHO05D003590 4.6e-06 54.3 54 57.4
Medtr4g127490 Medicago truncatula HOM05D003168 ORTHO05D003590 4.6e-06 54.3 62 43.5
PSO144G0076 Papaver somniferum HOM05D003168 ORTHO05D003590 4.6e-06 54.3 41 61.0
vmacro20824 Vaccinium macrocarpon HOM05D003168 ORTHO05D003590 4.6e-06 54.3 49 59.2
BolC9t57759H Brassica oleracea HOM05D003168 ORTHO05D003590 6.0e-06 53.9 43 53.5
Psat1g144600 Pisum sativum HOM05D003168 ORTHO05D003590 6.0e-06 53.9 56 46.4
PGR044G0796 Punica granatum HOM05D003168 ORTHO05D003590 6.0e-06 53.9 52 46.2
AL8G33210 Arabidopsis lyrata HOM05D003168 ORTHO05D003590 7.8e-06 53.5 43 53.5
Glyma.17G060100 Glycine max HOM05D003168 ORTHO05D003590 7.8e-06 53.5 45 60.0
Medtr2g037770 Medicago truncatula HOM05D003168 ORTHO05D003590 7.8e-06 53.5 47 55.3
TPR.G30787 Trifolium pratense HOM05D003168 ORTHO05D003590 7.8e-06 53.5 58 51.7
TPR.G5366 Trifolium pratense HOM05D003168 ORTHO05D003590 7.8e-06 53.5 47 55.3


User provided reference genes

Program Settings