Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 0.0e+00 1139.4 584 100.0
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 0.0e+00 1098.2 584 96.9
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 0.0e+00 1097.4 584 96.9
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 1.1e-309 1065.8 584 93.8
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 4.2e-288 994.2 590 89.2
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 7.5e-269 930.2 554 86.3
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 6.4e-268 927.2 576 83.3
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 1.9e-264 915.6 583 81.1
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 8.1e-263 910.2 578 81.0
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 2.6e-261 905.2 579 80.1
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.4e-259 898.7 583 80.3
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 5.1e-257 891.0 564 81.0
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 1.9e-256 889.0 582 79.2
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 8.1e-255 883.6 582 78.7
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 1.8e-254 882.5 583 78.7
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.6e-253 878.6 579 77.7
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.6e-253 878.6 579 77.9
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 4.4e-253 877.9 583 78.2
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 8.4e-252 873.6 584 77.9
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 1.4e-251 872.8 584 76.9
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 1.9e-251 872.5 574 78.9
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 1.6e-250 869.4 573 76.8
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 7.8e-250 867.1 634 72.6
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.0e-249 866.7 573 78.4
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.3e-249 866.3 579 77.2
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 1.7e-249 865.9 583 75.8
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.9e-249 864.8 579 77.2
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.5e-248 862.8 578 77.3
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 3.6e-247 858.2 577 76.9
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 3.1e-246 855.1 556 77.2
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 3.1e-246 855.1 583 74.6
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 6.9e-246 854.0 582 75.1
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 6.9e-246 854.0 583 74.1
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 9.0e-246 853.6 574 76.8
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.2e-245 853.2 575 75.5
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 1.2e-245 853.2 575 75.5
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 3.4e-245 851.7 577 76.1
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 3.8e-244 848.2 588 74.8
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 8.4e-244 847.0 551 78.8
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 2.3e-241 839.0 558 77.4
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 3.9e-241 838.2 588 75.3
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 5.6e-240 834.3 558 77.2
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 7.3e-240 833.9 561 75.8
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 1.8e-238 829.3 578 74.0
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 3.8e-236 821.6 580 73.4
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.9e-235 819.3 583 72.9
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 9.3e-235 817.0 571 74.6
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 7.9e-234 813.9 580 72.9
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.0e-233 813.5 584 73.1
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 3.0e-233 812.0 581 70.9
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 3.9e-233 811.6 581 72.1
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 3.9e-233 811.6 575 72.5
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 3.9e-233 811.6 576 72.4
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 2.5e-232 808.9 579 73.6
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 2.5e-232 808.9 576 72.2
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 7.4e-232 807.4 586 72.0
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 3.7e-231 805.1 579 72.5
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 4.8e-231 804.7 574 72.3
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 6.2e-231 804.3 586 71.8
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 8.1e-231 803.9 586 72.4
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.8e-230 802.7 577 73.1
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 2.4e-230 802.4 579 72.9
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 6.9e-230 800.8 565 75.0
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 9.0e-230 800.4 577 72.8
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 1.5e-229 799.7 578 72.7
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 2.0e-229 799.3 577 72.6
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 5.8e-229 797.7 599 69.4
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.3e-228 796.6 577 72.4
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 5.5e-227 791.2 624 68.6
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.2e-226 790.0 590 70.5
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.5e-226 788.5 584 69.7
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.1e-224 783.5 578 70.6
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 5.3e-222 774.6 568 71.7
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 5.3e-222 774.6 599 68.8
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.4e-219 766.5 584 70.0
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 4.6e-218 761.5 577 69.3
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 6.0e-218 761.1 601 67.7
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 1.5e-216 756.5 566 70.1
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 4.8e-215 751.5 620 66.8
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.1e-214 748.4 593 68.6
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 7.7e-213 744.2 559 70.3
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.0e-212 743.8 552 73.0
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 4.3e-208 728.4 604 65.6
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 4.8e-207 724.9 587 65.6
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 1.8e-206 723.0 576 65.6
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 7.2e-203 711.1 583 64.8
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 6.7e-201 704.5 431 84.0
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.8e-198 696.4 524 69.5
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 6.5e-180 634.8 705 52.2
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 8.8e-177 624.4 436 74.3
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 3.6e-170 602.4 582 56.2
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.1e-166 590.9 582 54.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.3e-155 552.4 581 53.7
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 5.8e-144 515.4 594 48.5
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.4e-142 510.8 560 53.0
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 8.4e-127 458.4 318 74.8
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 8.2e-106 388.7 271 72.3
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 5.8e-104 382.5 288 69.8
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 5.5e-94 349.4 224 80.8
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 4.6e-93 346.3 311 59.5
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 4.0e-76 290.0 193 73.6
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 7.7e-56 222.6 298 49.0
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 3.4e-51 207.2 164 64.0
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 1.2e-48 198.7 241 41.1
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 4.7e-45 186.8 117 81.2
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 8.9e-44 182.6 120 73.3
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 2.0e-43 181.4 144 65.3
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.9e-41 174.9 120 70.8
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 7.5e-35 152.9 109 73.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 3.2e-33 147.5 134 56.7
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 8.1e-29 132.9 187 47.6
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.7e-23 115.2 85 63.5
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.2e-21 109.0 189 37.6
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.2e-21 109.0 185 38.9
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 8.1e-21 106.3 118 51.7
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 4.9e-18 97.1 83 63.9
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 4.3e-14 84.0 104 45.2
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.6e-13 80.9 146 41.1
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 9.0e-12 76.3 55 72.7
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.0e-11 75.1 210 29.5
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 7.6e-11 73.2 175 34.3
RcHm_v2.0_Chr4g0399371 Rosa chinensis HOM05D006362 ORTHO05D341637 4.9e-10 70.5 45 77.8
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.9e-09 68.6 57 64.9
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 3.2e-09 67.8 153 32.7
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 1.2e-08 65.9 135 32.6
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 1.3e-07 62.4 50 62.0
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 6.6e-07 60.1 37 75.7
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 9.6e-06 56.2 77 39.0


User provided reference genes

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