Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3010 Fragaria x ananassa HOM05D003008 ORTHO05D003346 2.3e-125 452.2 225 100.0
FvH4_3g11200 Fragaria vesca HOM05D003008 ORTHO05D003346 1.8e-109 399.4 205 97.6
FAN16G1739 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.0e-104 383.6 230 87.0
FAN25G1216 Fragaria x ananassa HOM05D003008 ORTHO05D003346 9.8e-100 367.1 230 84.8
RcHm_v2.0_Chr5g0018141 Rosa chinensis HOM05D003008 ORTHO05D003346 4.1e-90 335.1 205 83.4
Prupe.4G099900 Prunus persica HOM05D003008 ORTHO05D003346 8.4e-59 231.1 193 63.2
MD05G1265600 Malus domestica HOM05D003008 ORTHO05D003346 3.0e-56 222.6 194 59.3
Haze_05935 Corylus avellana HOM05D003008 ORTHO05D003346 6.7e-40 168.3 192 47.9
Cfa000776 Carpinus fangiana HOM05D003008 ORTHO05D003346 1.0e-35 154.5 192 45.3
CANSAT64G0697 Cannabis sativa HOM05D003008 ORTHO05D003346 1.7e-35 153.7 206 46.1
Atru.chr10.698 Acer truncatum HOM05D003008 ORTHO05D003346 2.2e-35 153.3 143 54.5
Sabra16G0312700 Salix brachista HOM05D003008 ORTHO05D003346 5.0e-35 152.1 185 43.8
Manes.09G088066 Manihot esculenta HOM05D003008 ORTHO05D003346 1.9e-34 150.2 129 51.2
Sabra16G0312900 Salix brachista HOM05D003008 ORTHO05D003346 1.9e-34 150.2 207 44.4
arahy.Tifrunner.gnm1.ann1.MYLU20 Arachis hypogaea HOM05D003008 ORTHO05D003346 7.2e-34 148.3 206 43.2
arahy.Tifrunner.gnm1.ann1.57FUCZ Arachis hypogaea HOM05D003008 ORTHO05D003346 1.2e-33 147.5 158 50.0
Dinv26204 Davidia involucrata HOM05D003008 ORTHO05D003346 2.1e-33 146.7 179 46.9
Potri.001G461200 Populus trichocarpa HOM05D003008 ORTHO05D003346 4.6e-33 145.6 203 42.4
ClCG03G008500 Citrullus lanatus HOM05D003008 ORTHO05D003346 6.1e-33 145.2 132 49.2
Glyma.09G028800 Glycine max HOM05D003008 ORTHO05D003346 5.1e-32 142.1 189 43.4
Sed0001268 Sechium edule HOM05D003008 ORTHO05D003346 8.7e-32 141.4 188 39.9
TPR.G8027 Trifolium pratense HOM05D003008 ORTHO05D003346 1.9e-31 140.2 197 44.2
Eucgr.D01012 Eucalyptus grandis HOM05D003008 ORTHO05D003346 4.3e-31 139.0 171 45.0
Ca_00892_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 7.4e-31 138.3 192 45.8
QL05p064497 Quercus lobata HOM05D003008 ORTHO05D003346 7.4e-31 138.3 203 40.9
Ciclev10015609m.g Citrus clementina HOM05D003008 ORTHO05D003346 3.7e-30 136.0 154 45.5
Psat1g164720 Pisum sativum HOM05D003008 ORTHO05D003346 1.1e-29 134.4 179 43.0
TWI63G0820 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 1.4e-29 134.0 145 46.2
Lalb_Chr18g0058251 Lupinus albus HOM05D003008 ORTHO05D003346 1.5e-28 130.6 200 40.5
Lj6g0000719 Lotus japonicus HOM05D003008 ORTHO05D003346 2.6e-28 129.8 206 40.8
Thecc.06G011100 Theobroma cacao HOM05D003008 ORTHO05D003346 3.4e-28 129.4 160 45.0
CsaV3_1G037590 Cucumis sativus L. HOM05D003008 ORTHO05D003346 4.5e-28 129.0 168 40.5
Rhsim13G0124700 Rhododendron simsii HOM05D003008 ORTHO05D003346 1.0e-27 127.9 140 50.0
DCAR_007819 Daucus carota HOM05D003008 ORTHO05D003346 1.7e-27 127.1 143 46.2
Medtr5g099220 Medicago truncatula HOM05D003008 ORTHO05D003346 2.2e-27 126.7 131 49.6
COL.COLO4_22895 Corchorus olitorius HOM05D003008 ORTHO05D003346 3.8e-27 125.9 137 47.4
Medtr2g031740 Medicago truncatula HOM05D003008 ORTHO05D003346 6.5e-27 125.2 177 41.8
Nn7g37799 Nelumbo nucifera HOM05D003008 ORTHO05D003346 6.5e-27 125.2 145 46.2
ATR0763G210 Amborella trichopoda HOM05D003008 ORTHO05D003346 8.5e-27 124.8 223 37.2
CDE01G0377 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 8.5e-27 124.8 142 45.8
CDE02G0274 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 8.5e-27 124.8 175 42.3
Duzib235G1093 Durio zibethinus HOM05D003008 ORTHO05D003346 1.4e-26 124.0 178 44.4
SalBow8G1512 Salvia bowleyana HOM05D003008 ORTHO05D003346 1.4e-26 124.0 202 41.1
Thecc.06G011200 Theobroma cacao HOM05D003008 ORTHO05D003346 1.4e-26 124.0 196 41.3
CANSAT35G1991 Cannabis sativa HOM05D003008 ORTHO05D003346 1.9e-26 123.6 139 46.8
Actinidia33693 Actinidia chinensis HOM05D003008 ORTHO05D003346 3.2e-26 122.9 200 39.5
Cc09_g07360 Coffea canephora HOM05D003008 ORTHO05D003346 4.2e-26 122.5 185 39.5
Migut.M01921 Erythranthe guttata HOM05D003008 ORTHO05D003346 4.2e-26 122.5 174 42.0
Oeu060320.2 Olea europaea HOM05D003008 ORTHO05D003346 1.2e-25 120.9 143 46.2
CiPaw.03G113700 Carya illinoinensis HOM05D003008 ORTHO05D003346 1.6e-25 120.6 198 39.4
Nitab4.5_0001181g0080 Nicotiana tabacum HOM05D003008 ORTHO05D003346 1.6e-25 120.6 203 36.9
Dinv08829 Davidia involucrata HOM05D003008 ORTHO05D003346 2.7e-25 119.8 193 37.8
Aqoxy1G01512 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 3.6e-25 119.4 147 44.2
ECA233G3161 Erigeron canadensis HOM05D003008 ORTHO05D003346 3.6e-25 119.4 148 43.9
Hma1.2p1_1413F.1_g281810 Hydrangea macrophylla HOM05D003008 ORTHO05D003346 3.6e-25 119.4 140 40.7
Prupe.4G099700 Prunus persica HOM05D003008 ORTHO05D003346 4.6e-25 119.0 151 45.0
Nitab4.5_0000076g0040 Nicotiana tabacum HOM05D003008 ORTHO05D003346 6.1e-25 118.6 130 49.2
Duzib160G0679 Durio zibethinus HOM05D003008 ORTHO05D003346 1.4e-24 117.5 137 43.1
Migut.M01920 Erythranthe guttata HOM05D003008 ORTHO05D003346 1.4e-24 117.5 158 41.8
Aa31LG6G11900 Aethionema arabicum HOM05D003008 ORTHO05D003346 2.3e-24 116.7 140 45.7
CAN.G39.23 Capsicum annuum HOM05D003008 ORTHO05D003346 6.7e-24 115.2 150 44.7
Phvul.006G124400 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 6.7e-24 115.2 145 46.2
COL.COLO4_22894 Corchorus olitorius HOM05D003008 ORTHO05D003346 1.1e-23 114.4 153 42.5
Medtr2g031620 Medicago truncatula HOM05D003008 ORTHO05D003346 1.1e-23 114.4 142 43.0
Eucgr.D01628 Eucalyptus grandis HOM05D003008 ORTHO05D003346 1.5e-23 114.0 150 40.7
Gohir.D05G112900 Gossypium hirsutum HOM05D003008 ORTHO05D003346 2.5e-23 113.2 139 45.3
QL03p057306 Quercus lobata HOM05D003008 ORTHO05D003346 3.3e-23 112.8 187 39.0
CsaV3_1G037560 Cucumis sativus L. HOM05D003008 ORTHO05D003346 4.3e-23 112.5 129 42.6
CSS0037242 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 5.7e-23 112.1 191 36.1
Gohir.D05G113000 Gossypium hirsutum HOM05D003008 ORTHO05D003346 5.7e-23 112.1 137 43.8
Actinidia33712 Actinidia chinensis HOM05D003008 ORTHO05D003346 7.4e-23 111.7 191 38.2
Ciclev10014667m.g Citrus clementina HOM05D003008 ORTHO05D003346 7.4e-23 111.7 149 41.6
Gohir.A05G112501 Gossypium hirsutum HOM05D003008 ORTHO05D003346 7.4e-23 111.7 156 41.0
HanXRQChr01g0020621 Helianthus annuus HOM05D003008 ORTHO05D003346 7.4e-23 111.7 124 46.8
MD10G1243800 Malus domestica HOM05D003008 ORTHO05D003346 9.7e-23 111.3 205 39.0
Phvul.006G124200 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 9.7e-23 111.3 172 37.2
Cfa023567 Carpinus fangiana HOM05D003008 ORTHO05D003346 1.3e-22 110.9 126 42.9
Sed0021502 Sechium edule HOM05D003008 ORTHO05D003346 1.3e-22 110.9 156 41.0
THA.LOC104798583 Tarenaya hassleriana HOM05D003008 ORTHO05D003346 1.3e-22 110.9 169 39.1
Rhsim13G0124600 Rhododendron simsii HOM05D003008 ORTHO05D003346 1.7e-22 110.5 126 44.4
GSVIVG01021741001 Vitis vinifera HOM05D003008 ORTHO05D003346 1.7e-22 110.5 140 39.3
Solyc02g022830.3 Solanum lycopersicum HOM05D003008 ORTHO05D003346 2.2e-22 110.2 187 39.0
CARHR030150 Cardamine hirsuta HOM05D003008 ORTHO05D003346 3.7e-22 109.4 157 42.0
Manes.14G125700 Manihot esculenta HOM05D003008 ORTHO05D003346 3.7e-22 109.4 187 36.4
Peaxi162Scf00155g00316 Petunia axillaris HOM05D003008 ORTHO05D003346 3.7e-22 109.4 135 46.7
CSS0042083 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 4.8e-22 109.0 145 40.7
CAN.G660.46 Capsicum annuum HOM05D003008 ORTHO05D003346 8.2e-22 108.2 128 43.0
Lalb_Chr15g0088941 Lupinus albus HOM05D003008 ORTHO05D003346 8.2e-22 108.2 153 39.9
PSO541G5492 Papaver somniferum HOM05D003008 ORTHO05D003346 8.2e-22 108.2 149 44.3
Sopen02g006420 Solanum pennellii HOM05D003008 ORTHO05D003346 8.2e-22 108.2 187 40.1
arahy.Tifrunner.gnm1.ann1.WH7KDQ Arachis hypogaea HOM05D003008 ORTHO05D003346 1.1e-21 107.8 177 37.9
GSVIVG01008778001 Vitis vinifera HOM05D003008 ORTHO05D003346 1.1e-21 107.8 197 37.1
Glyma.15G134500 Glycine max HOM05D003008 ORTHO05D003346 1.4e-21 107.5 128 43.8
Lj1A1159T86 Lonicera japonica HOM05D003008 ORTHO05D003346 1.4e-21 107.5 125 45.6
Ca_25498_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 1.8e-21 107.1 126 42.1
arahy.Tifrunner.gnm1.ann1.SN2S9U Arachis hypogaea HOM05D003008 ORTHO05D003346 2.4e-21 106.7 187 38.0
FAN16G0127 Fragaria x ananassa HOM05D003008 ORTHO05D003346 2.4e-21 106.7 133 42.1
Glyma.09G028600 Glycine max HOM05D003008 ORTHO05D003346 2.4e-21 106.7 140 42.9
vmacro03472 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 2.4e-21 106.7 179 36.3
Solyc02g070230.2 Solanum lycopersicum HOM05D003008 ORTHO05D003346 3.1e-21 106.3 195 35.9
SGA_v2.0_scaffold223G42877 Striga asiatica HOM05D003008 ORTHO05D003346 3.1e-21 106.3 147 41.5
TWI15G0228 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 3.1e-21 106.3 128 42.2
GSVIVG01021728001 Vitis vinifera HOM05D003008 ORTHO05D003346 3.1e-21 106.3 143 39.9
FvH4_3g11220 Fragaria vesca HOM05D003008 ORTHO05D003346 5.3e-21 105.5 133 41.4
FAN21G3776 Fragaria x ananassa HOM05D003008 ORTHO05D003346 5.3e-21 105.5 127 42.5
Gorai.009G117100 Gossypium raimondii HOM05D003008 ORTHO05D003346 5.3e-21 105.5 137 42.3
Lalb_Chr18g0058241 Lupinus albus HOM05D003008 ORTHO05D003346 5.3e-21 105.5 170 38.8
RcHm_v2.0_Chr5g0018171 Rosa chinensis HOM05D003008 ORTHO05D003346 5.3e-21 105.5 143 40.6
Sp1g26580 Schrenkiella parvula HOM05D003008 ORTHO05D003346 5.3e-21 105.5 171 39.8
Lj2A336T37 Lonicera japonica HOM05D003008 ORTHO05D003346 6.9e-21 105.1 126 42.9
Lj6g0020929 Lotus japonicus HOM05D003008 ORTHO05D003346 6.9e-21 105.1 141 43.3
VMungo0540G1323 Vigna mungo HOM05D003008 ORTHO05D003346 6.9e-21 105.1 141 42.6
PGR044G1782 Punica granatum HOM05D003008 ORTHO05D003346 9.1e-21 104.8 168 35.7
PGSC0003DMG400021105 Solanum tuberosum HOM05D003008 ORTHO05D003346 9.1e-21 104.8 172 38.4
MELO3C002865.2 Cucumis melo HOM05D003008 ORTHO05D003346 1.2e-20 104.4 149 37.6
Sopen02g019320 Solanum pennellii HOM05D003008 ORTHO05D003346 1.2e-20 104.4 184 37.0
SGA_v2.0_scaffold306G48030 Striga asiatica HOM05D003008 ORTHO05D003346 1.2e-20 104.4 163 39.9
unitig_92.g28176 Utricularia gibba HOM05D003008 ORTHO05D003346 1.5e-20 104.0 127 44.1
PSO675G7488 Papaver somniferum HOM05D003008 ORTHO05D003346 2.0e-20 103.6 149 43.6
MSTRG.7558 Avicennia marina HOM05D003008 ORTHO05D003346 2.6e-20 103.2 149 40.9
Lsat_1_v5_gn_1_91780 Lactuca sativa HOM05D003008 ORTHO05D003346 3.4e-20 102.8 146 40.4
FAN25G1988 Fragaria x ananassa HOM05D003008 ORTHO05D003346 5.9e-20 102.1 157 36.9
Potri.001G461300 Populus trichocarpa HOM05D003008 ORTHO05D003346 5.9e-20 102.1 129 42.6
unitig_92.g28180 Utricularia gibba HOM05D003008 ORTHO05D003346 7.7e-20 101.7 149 39.6
HanXRQChr01g0020641 Helianthus annuus HOM05D003008 ORTHO05D003346 1.3e-19 100.9 196 33.2
GSVIVG01037928001 Vitis vinifera HOM05D003008 ORTHO05D003346 1.7e-19 100.5 91 53.8
Carub.0001s2896 Capsella rubella HOM05D003008 ORTHO05D003346 2.9e-19 99.8 179 38.5
Peaxi162Scf00701g00055 Petunia axillaris HOM05D003008 ORTHO05D003346 2.9e-19 99.8 180 35.0
SalBow8G1795 Salvia bowleyana HOM05D003008 ORTHO05D003346 2.9e-19 99.8 183 37.2
CiPaw.09G146400 Carya illinoinensis HOM05D003008 ORTHO05D003346 6.5e-19 98.6 91 50.5
Nitab4.5_0002005g0070 Nicotiana tabacum HOM05D003008 ORTHO05D003346 6.5e-19 98.6 135 42.2
AL1G44740 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 8.5e-19 98.2 175 36.0
Lsat_1_v5_gn_1_91720 Lactuca sativa HOM05D003008 ORTHO05D003346 8.5e-19 98.2 189 34.4
ECA248G0148 Erigeron canadensis HOM05D003008 ORTHO05D003346 1.1e-18 97.8 176 33.5
TAR626G0717 Trochodendron aralioides HOM05D003008 ORTHO05D003346 1.9e-18 97.1 108 41.7
Lsat_1_v5_gn_8_128321 Lactuca sativa HOM05D003008 ORTHO05D003346 3.2e-18 96.3 157 39.5
Sc10g0009650 Simmondsia chinensis HOM05D003008 ORTHO05D003346 3.2e-18 96.3 101 45.5
HanXRQChr11g0340941 Helianthus annuus HOM05D003008 ORTHO05D003346 4.2e-18 95.9 198 33.3
AT1G30680 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 5.5e-18 95.5 175 35.4
SalBow8G4789 Salvia bowleyana HOM05D003008 ORTHO05D003346 7.2e-18 95.1 203 36.5
EL10Ac8g19523 Beta vulgaris HOM05D003008 ORTHO05D003346 4.7e-17 92.4 182 36.3
Zm00001eb274090 Zea mays HOM05D003008 ORTHO05D003346 4.7e-17 92.4 118 43.2
ClCG03G008470 Citrullus lanatus HOM05D003008 ORTHO05D003346 6.1e-17 92.0 98 45.9
Atru.chr10.699 Acer truncatum HOM05D003008 ORTHO05D003346 7.9e-17 91.7 142 40.8
Haze_13591 Corylus avellana HOM05D003008 ORTHO05D003346 7.9e-17 91.7 151 34.4
Psat1g164800 Pisum sativum HOM05D003008 ORTHO05D003346 7.9e-17 91.7 129 38.0
AL1G44720 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 1.0e-16 91.3 127 40.9
Thhalv10006950m.g Eutrema salsugineum HOM05D003008 ORTHO05D003346 1.0e-16 91.3 170 36.5
BcaC05g27092 Brassica carinata HOM05D003008 ORTHO05D003346 2.3e-16 90.1 171 37.4
C05p29740 Brassica napus HOM05D003008 ORTHO05D003346 2.3e-16 90.1 171 37.4
Cc02_g32870 Coffea canephora HOM05D003008 ORTHO05D003346 2.3e-16 90.1 187 36.4
FAN04G0071 Fragaria x ananassa HOM05D067162 ORTHO05D003346 5.1e-16 89.0 43 95.3
FAN09G2834 Fragaria x ananassa HOM05D067162 ORTHO05D208235 5.1e-16 89.0 43 95.3
Nitab4.5_0011416g0030 Nicotiana tabacum HOM05D003008 ORTHO05D003346 5.1e-16 89.0 213 29.1
A09p35720 Brassica napus HOM05D003008 ORTHO05D003346 6.7e-16 88.6 172 37.2
TPR.G15179 Trifolium pratense HOM05D003008 ORTHO05D003346 6.7e-16 88.6 124 41.9
HPP92_005928 Vanilla planifolia HOM05D003008 ORTHO05D003346 6.7e-16 88.6 190 33.7
AUR62025821 Chenopodium quinoa HOM05D003008 ORTHO05D003346 8.8e-16 88.2 157 37.6
PSO063G4114 Papaver somniferum HOM05D003008 ORTHO05D003346 8.8e-16 88.2 186 35.5
BcaB07g32707 Brassica carinata HOM05D003008 ORTHO05D003346 1.5e-15 87.4 172 37.2
DCAR_007820 Daucus carota HOM05D003008 ORTHO05D003346 2.0e-15 87.0 187 34.2
AUR62029886 Chenopodium quinoa HOM05D003008 ORTHO05D003346 4.4e-15 85.9 157 36.9
Lj1C1159T8 Lonicera japonica HOM05D003008 ORTHO05D003346 5.7e-15 85.5 166 32.5
AT1G30660 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 7.4e-15 85.1 138 37.7
BraA09t39097Z Brassica rapa HOM05D003008 ORTHO05D003346 9.7e-15 84.7 177 36.2
SEGI_26502 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 1.3e-14 84.3 225 28.4
BolC5t31702H Brassica oleracea HOM05D003008 ORTHO05D003346 2.2e-14 83.6 180 35.6
HPP92_013208 Vanilla planifolia HOM05D003008 ORTHO05D003346 2.4e-13 80.1 177 33.9
Sabra16G0312800 Salix brachista HOM05D003008 ORTHO05D003346 3.1e-13 79.7 208 31.7
Aqoxy7G01281 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 5.3e-13 79.0 169 32.5
TWI15G0229 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.6e-12 77.4 117 33.3
arahy.Tifrunner.gnm1.ann1.28UEMM Arachis hypogaea HOM05D003008 ORTHO05D003346 2.6e-12 76.6 106 39.6
Sabra16G0313000 Salix brachista HOM05D003008 ORTHO05D003346 5.9e-12 75.5 208 30.8
SGA_v2.0_scaffold1G00291 Striga asiatica HOM05D003008 ORTHO05D003346 1.3e-11 74.3 166 29.5
Cpa.g.sc489.1 Carica papaya HOM05D003008 ORTHO05D003346 1.7e-11 73.9 217 29.0
MBI02_g32311_MAGBIO Magnolia biondii HOM05D003008 ORTHO05D003346 1.7e-11 73.9 141 31.9
MELO3C035679.2 Cucumis melo HOM05D003008 ORTHO05D003346 1.9e-10 70.5 147 34.0
HPP92_005917 Vanilla planifolia HOM05D002182 ORTHO05D004671 6.1e-09 65.5 128 32.0
Mapoly0003s0305 Marchantia polymorpha HOM05D003008 ORTHO05D003346 1.0e-08 64.7 219 30.1
SMO364G0389 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 1.3e-06 57.8 128 27.3


User provided reference genes

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