Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2430 Fragaria x ananassa HOM05D001348 ORTHO05D029687 4.3e-74 281.2 137 100.0
FAN27G0327 Fragaria x ananassa HOM05D001348 ORTHO05D029687 4.0e-72 274.6 137 98.5
FvH4_2g37381 Fragaria vesca HOM05D001348 ORTHO05D002788 5.6e-66 254.2 132 96.2
FvH4_2g37410 Fragaria vesca HOM05D001348 ORTHO05D002788 1.3e-62 243.0 132 92.4
FAN21G0858 Fragaria x ananassa HOM05D001348 ORTHO05D029687 4.8e-57 224.6 109 99.1
FAN20G0725 Fragaria x ananassa HOM05D001348 ORTHO05D002788 1.6e-52 209.5 132 82.6
RcHm_v2.0_Chr6g0304311 Rosa chinensis HOM05D001348 ORTHO05D002788 7.7e-39 164.1 128 72.7
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 2.3e-27 125.9 100 66.0
Eucgr.F01770 Eucalyptus grandis HOM05D001348 ORTHO05D002788 1.6e-20 103.2 90 55.6
TWI12G1367 Tripterygium wilfordii HOM05D001348 ORTHO05D002788 1.0e-19 100.5 107 50.5
CANSAT25G0108 Cannabis sativa HOM05D001348 ORTHO05D002788 8.8e-19 97.4 96 57.3
Prupe.1G354000 Prunus persica HOM05D001348 ORTHO05D002788 1.2e-18 97.1 88 54.5
Dinv31946 Davidia involucrata HOM05D001348 ORTHO05D002788 3.4e-18 95.5 93 52.7
Cfa014084 Carpinus fangiana HOM05D001348 ORTHO05D002788 1.3e-17 93.6 138 39.9
Ciclev10000256m.g Citrus clementina HOM05D001348 ORTHO05D002788 1.3e-17 93.6 141 43.3
Haze_22785 Corylus avellana HOM05D001348 ORTHO05D002788 1.7e-17 93.2 138 39.1
Dinv05530 Davidia involucrata HOM05D001348 ORTHO05D002788 1.7e-17 93.2 96 50.0
Thecc.08G059600 Theobroma cacao HOM05D001348 ORTHO05D002788 1.7e-17 93.2 141 43.3
MD08G1002300 Malus domestica HOM05D001348 ORTHO05D002788 3.7e-17 92.0 78 55.1
FAN03G1325 Fragaria x ananassa HOM05D001348 ORTHO05D029687 4.8e-17 91.7 52 82.7
COL.COLO4_05220 Corchorus olitorius HOM05D001348 ORTHO05D002788 8.3e-17 90.9 136 43.4
Lj1g0023484 Lotus japonicus HOM05D001348 ORTHO05D002788 8.3e-17 90.9 67 58.2
GSVIVG01008673001 Vitis vinifera HOM05D001348 ORTHO05D002788 8.3e-17 90.9 122 43.4
Ah.00g000830 Amaranthus hybridus HOM05D001348 ORTHO05D002788 1.1e-16 90.5 80 52.5
Duzib093G1181 Durio zibethinus HOM05D001348 ORTHO05D002788 1.1e-16 90.5 123 42.3
Nn5g30949 Nelumbo nucifera HOM05D001348 ORTHO05D002788 1.1e-16 90.5 83 54.2
Atru.chr13.139 Acer truncatum HOM05D001348 ORTHO05D002788 1.8e-16 89.7 131 43.5
Psat0s2670g0080 Pisum sativum HOM05D001348 ORTHO05D002788 1.8e-16 89.7 76 56.6
Lj4C10G12 Lonicera japonica HOM05D001348 ORTHO05D002788 3.1e-16 89.0 133 40.6
Medtr3g115340 Medicago truncatula HOM05D001348 ORTHO05D002788 3.1e-16 89.0 76 56.6
QL02p014252 Quercus lobata HOM05D001348 ORTHO05D002788 4.1e-16 88.6 141 41.1
Glyma.04G017700 Glycine max HOM05D001348 ORTHO05D002788 5.3e-16 88.2 67 58.2
Phvul.009G011000 Phaseolus vulgaris HOM05D001348 ORTHO05D002788 5.3e-16 88.2 67 59.7
THA.LOC104825424 Tarenaya hassleriana HOM05D001348 ORTHO05D002788 9.1e-16 87.4 143 42.7
TAR628G1023 Trochodendron aralioides HOM05D001348 ORTHO05D002788 1.2e-15 87.0 140 42.1
VMungo1309G1980 Vigna mungo HOM05D001348 ORTHO05D002788 1.2e-15 87.0 67 58.2
Actinidia15493 Actinidia chinensis HOM05D001348 ORTHO05D002788 1.6e-15 86.7 141 42.6
TPR.G38178 Trifolium pratense HOM05D001348 ORTHO05D002788 1.6e-15 86.7 77 57.1
CiPaw.07G138400 Carya illinoinensis HOM05D001348 ORTHO05D002788 2.7e-15 85.9 136 40.4
Gorai.005G113800 Gossypium raimondii HOM05D001348 ORTHO05D002788 2.7e-15 85.9 69 56.5
PGR083G0741 Punica granatum HOM05D001348 ORTHO05D002788 3.5e-15 85.5 138 38.4
Actinidia17043 Actinidia chinensis HOM05D001348 ORTHO05D002788 7.7e-15 84.3 93 48.4
arahy.Tifrunner.gnm1.ann1.7NA3QC Arachis hypogaea HOM05D001348 ORTHO05D002788 7.7e-15 84.3 67 56.7
CAN.G311.118 Capsicum annuum HOM05D001348 ORTHO05D002788 1.0e-14 84.0 78 56.4
Potri.005G251000 Populus trichocarpa HOM05D001348 ORTHO05D002788 1.0e-14 84.0 96 46.9
Cc10_g00640 Coffea canephora HOM05D001348 ORTHO05D002788 1.3e-14 83.6 84 47.6
DCAR_016772 Daucus carota HOM05D001348 ORTHO05D002788 1.3e-14 83.6 76 52.6
Rhsim06G0006900 Rhododendron simsii HOM05D001348 ORTHO05D002788 1.7e-14 83.2 140 39.3
Lalb_Chr11g0061611 Lupinus albus HOM05D001348 ORTHO05D002788 2.2e-14 82.8 66 56.1
Gohir.D02G100400 Gossypium hirsutum HOM05D001348 ORTHO05D002788 2.9e-14 82.4 142 40.1
SGA_v2.0_scaffold82G26249 Striga asiatica HOM05D001348 ORTHO05D002788 3.8e-14 82.0 110 42.7
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 5.0e-14 81.6 93 44.1
Sc26g0004640 Simmondsia chinensis HOM05D001348 ORTHO05D002788 5.0e-14 81.6 69 53.6
Sopen04g036000 Solanum pennellii HOM05D001348 ORTHO05D002788 5.0e-14 81.6 131 43.5
Solyc04g082400.3 Solanum lycopersicum HOM05D001348 ORTHO05D002788 6.5e-14 81.3 131 41.2
Gohir.A02G084500 Gossypium hirsutum HOM05D001348 ORTHO05D002788 8.5e-14 80.9 65 56.9
arahy.Tifrunner.gnm1.ann1.M043T1 Arachis hypogaea HOM05D001348 ORTHO05D002788 1.1e-13 80.5 122 41.8
PGSC0003DMG400009981 Solanum tuberosum HOM05D001348 ORTHO05D002788 1.1e-13 80.5 78 52.6
vmacro21808 Vaccinium macrocarpon HOM05D001348 ORTHO05D002788 1.5e-13 80.1 141 40.4
EL10Ac1g01952 Beta vulgaris HOM05D001348 ORTHO05D002788 2.5e-13 79.3 83 47.0
DCAR_013916 Daucus carota HOM05D001348 ORTHO05D002788 4.2e-13 78.6 76 51.3
ECA233G1445 Erigeron canadensis HOM05D001348 ORTHO05D002788 4.2e-13 78.6 67 55.2
AUR62036860 Chenopodium quinoa HOM05D001348 ORTHO05D002788 9.4e-13 77.4 128 38.3
Hma1.2p1_0507F.1_g168550 Hydrangea macrophylla HOM05D001348 ORTHO05D002788 9.4e-13 77.4 92 43.5
MELO3C026536.2 Cucumis melo HOM05D001348 ORTHO05D002788 1.2e-12 77.0 69 49.3
AUR62040796 Chenopodium quinoa HOM05D001348 ORTHO05D002788 1.6e-12 76.6 69 50.7
Nitab4.5_0000588g0040 Nicotiana tabacum HOM05D001348 ORTHO05D002788 1.6e-12 76.6 135 40.7
Ca_15431_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 3.6e-12 75.5 60 56.7
Ca_15456_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 3.6e-12 75.5 60 56.7
ClCG08G009400 Citrullus lanatus HOM05D001348 ORTHO05D002788 3.6e-12 75.5 69 49.3
CsaV3_6G031530 Cucumis sativus L. HOM05D001348 ORTHO05D002788 6.1e-12 74.7 69 47.8
MSTRG.979 Avicennia marina HOM05D001348 ORTHO05D002788 2.3e-11 72.8 76 48.7
HanXRQChr13g0409701 Helianthus annuus HOM05D001348 ORTHO05D002788 3.0e-11 72.4 127 37.0
Manes.05G133800 Manihot esculenta HOM05D001348 ORTHO05D002788 3.0e-11 72.4 76 43.4
Peaxi162Scf00893g00013 Petunia axillaris HOM05D001348 ORTHO05D002788 3.0e-11 72.4 74 48.6
Aqoxy6G01706 Aquilegia oxysepala HOM05D001348 ORTHO05D002788 4.0e-11 72.0 77 42.9
Migut.C00387 Erythranthe guttata HOM05D001348 ORTHO05D002788 5.2e-11 71.6 67 52.2
Sed0027114 Sechium edule HOM05D001348 ORTHO05D002788 5.2e-11 71.6 78 43.6
Os06g0726400 Oryza sativa ssp. japonica HOM05D001348 ORTHO05D002788 6.8e-11 71.2 127 40.2
SalBow7G2313 Salvia bowleyana HOM05D001348 ORTHO05D002788 1.2e-10 70.5 77 48.1
Lsat_1_v5_gn_8_26220 Lactuca sativa HOM05D001348 ORTHO05D002788 1.5e-10 70.1 67 52.2
AUR62022516 Chenopodium quinoa HOM05D003315 ORTHO05D003407 2.0e-10 69.7 69 47.8
AUR62044333 Chenopodium quinoa HOM05D003315 ORTHO05D003407 2.0e-10 69.7 69 47.8
MBI08_g24272_MAGBIO Magnolia biondii HOM05D001348 ORTHO05D002788 2.0e-10 69.7 128 42.2
CDE02G0218 Ceratophyllum demersum HOM05D001348 ORTHO05D002788 2.6e-10 69.3 84 41.7
PSO541G3094 Papaver somniferum HOM05D001348 ORTHO05D002788 4.4e-10 68.6 77 40.3
PSO675G0174 Papaver somniferum HOM05D001348 ORTHO05D002788 9.8e-10 67.4 77 39.0
Cpa.g.sc801.2 Carica papaya HOM05D001348 ORTHO05D002788 2.2e-09 66.2 58 56.9
Zm00001eb228530 Zea mays HOM05D001348 ORTHO05D002788 3.5e-07 58.9 94 34.0
ATR0661G525 Amborella trichopoda HOM05D001348 ORTHO05D002788 7.7e-07 57.8 62 51.6
SEGI_11034 Sequoiadendron giganteum HOM05D001348 ORTHO05D002788 1.7e-06 56.6 61 39.3
SEGI_16586 Sequoiadendron giganteum HOM05D001348 ORTHO05D002788 1.7e-06 56.6 61 39.3
AagrBONN_evm.TU.Sc2ySwM_362.1780 Anthoceros agrestis HOM05D001348 ORTHO05D002788 8.6e-06 54.3 62 41.9
Mapoly0009s0207 Marchantia polymorpha HOM05D001348 ORTHO05D002788 8.6e-06 54.3 63 39.7


User provided reference genes

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