Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.7e-71 271.9 140 100.0
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 3.0e-70 268.5 140 98.6
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 6.2e-68 260.8 140 96.4
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 6.2e-68 260.8 140 96.4
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 3.2e-64 248.4 140 92.1
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 7.8e-63 243.8 140 90.0
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.1e-59 233.4 140 85.7
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.4e-59 233.0 141 86.5
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 5.2e-59 231.1 140 85.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.2e-57 225.7 140 83.6
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 4.9e-57 224.6 141 83.0
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 4.9e-57 224.6 138 83.3
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 6.4e-57 224.2 140 81.4
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.1e-56 220.7 140 80.7
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.1e-56 220.7 140 81.4
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.2e-55 219.9 140 79.3
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.6e-55 219.5 139 82.0
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.7e-55 218.8 140 79.3
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 79.3
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 80.0
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 4.6e-55 218.0 140 80.0
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.3e-54 216.5 140 78.6
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 80.0
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 78.6
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 77.9
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 80.0
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.5e-53 213.0 141 78.7
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.5e-53 213.0 140 77.9
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.9e-53 212.6 141 78.0
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.3e-53 211.5 138 78.3
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.3e-53 210.7 141 79.4
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 9.5e-53 210.3 140 79.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 9.5e-53 210.3 140 77.9
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 9.5e-53 210.3 140 79.3
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.2e-52 209.9 140 78.6
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.8e-52 208.8 140 77.1
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 2.8e-52 208.8 140 78.6
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.8e-52 208.8 140 77.1
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 3.6e-52 208.4 140 78.6
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 77.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.7e-52 208.0 141 78.7
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 4.7e-52 208.0 141 78.7
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 6.2e-52 207.6 140 77.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 6.2e-52 207.6 140 77.1
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 6.2e-52 207.6 140 75.7
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 8.1e-52 207.2 142 76.8
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 8.1e-52 207.2 134 81.3
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.1e-51 206.8 136 77.9
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.1e-51 206.8 140 76.4
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 76.6
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.4e-51 206.5 140 76.4
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.8e-51 206.1 140 78.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 75.9
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 75.9
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 77.1
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 77.3
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 4.0e-51 204.9 140 75.7
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 6.8e-51 204.1 141 75.9
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.0e-50 202.6 142 80.3
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 3.4e-50 201.8 140 73.6
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.8e-50 201.1 140 75.0
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 5.8e-50 201.1 143 74.1
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.3e-49 199.9 137 73.7
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.3e-49 199.9 142 74.6
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 75.9
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 75.9
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.7e-49 199.5 142 77.5
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.7e-49 199.5 156 72.4
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.2e-49 199.1 141 76.6
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.9e-49 198.7 140 73.6
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 3.8e-49 198.4 141 75.9
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 3.8e-49 198.4 136 77.2
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 4.9e-49 198.0 141 75.2
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 6.4e-49 197.6 135 77.0
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.4e-49 197.2 140 75.0
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 1.1e-48 196.8 140 74.3
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 75.2
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.9e-48 196.1 140 74.3
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 76.6
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.4e-48 195.7 142 74.6
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.4e-48 195.7 142 74.6
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 3.2e-48 195.3 142 74.6
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 74.5
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 73.8
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 73.8
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 74.5
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 5.4e-48 194.5 142 74.6
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 7.1e-48 194.1 141 73.0
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 7.1e-48 194.1 143 74.1
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 7.1e-48 194.1 143 74.1
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 7.1e-48 194.1 140 69.3
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 73.0
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.6e-47 193.0 136 75.0
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 2.1e-47 192.6 140 71.4
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 2.1e-47 192.6 140 76.4
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.1e-47 192.6 141 75.9
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 72.3
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 72.3
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 72.3
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 3.5e-47 191.8 141 73.8
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 3.5e-47 191.8 141 73.8
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 3.5e-47 191.8 141 73.8
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 3.5e-47 191.8 141 73.8
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 3.5e-47 191.8 141 73.8
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 3.5e-47 191.8 145 73.8
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 7.8e-47 190.7 142 73.2
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 7.8e-47 190.7 142 73.2
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 7.8e-47 190.7 142 73.2
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.0e-46 190.3 142 73.2
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.0e-46 190.3 141 74.5
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 2.3e-46 189.1 142 72.5
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 2.3e-46 189.1 142 72.5
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.3e-46 189.1 142 71.8
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 3.0e-46 188.7 142 71.8
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.9e-46 188.3 141 70.9
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 5.1e-46 188.0 139 71.9
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 8.6e-46 187.2 141 70.9
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-45 186.8 144 70.1
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 1.1e-45 186.8 140 70.7
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.9e-45 186.0 109 84.4
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 72.1
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.5e-45 185.7 142 71.1
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 3.3e-45 185.3 141 73.0
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 7.3e-45 184.1 141 72.3
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.2e-44 183.3 141 70.2
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.1e-44 182.6 133 73.7
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 3.6e-44 181.8 142 70.4
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.1e-43 178.7 140 67.1
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.0e-43 178.3 139 70.5
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 4.0e-43 178.3 140 67.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.5e-42 176.4 137 69.3
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.4e-42 175.3 137 67.9
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 4.4e-42 174.9 140 67.1
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 2.2e-41 172.6 140 67.1
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.9e-41 171.4 141 64.5
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.4e-40 167.9 138 64.5
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.3e-36 156.8 138 63.8
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.4e-35 153.3 139 59.0
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 4.0e-35 151.8 140 62.9
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.5e-34 149.8 140 60.7
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 5.8e-34 147.9 155 60.6
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 9.9e-34 147.1 147 57.8
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 9.9e-34 147.1 161 57.8
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 2.2e-33 146.0 99 75.8
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 8.4e-33 144.1 138 55.1
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.4e-32 142.5 114 69.3
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 4.2e-32 141.7 90 84.4
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.6e-31 139.8 139 56.8
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 2.7e-31 139.0 119 61.3
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 3.5e-31 138.7 140 55.7
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.3e-30 136.0 136 53.7
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.9e-29 132.9 147 54.4
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.3e-29 132.1 124 56.5
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.3e-29 131.7 137 58.4
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.6e-29 131.3 139 60.4
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.6e-29 131.3 141 56.0
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.4e-26 122.1 90 74.4
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 4.5e-26 121.7 110 65.5
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 4.3e-21 105.1 132 45.5
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 5.6e-21 104.8 67 71.6
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 3.7e-20 102.1 81 72.8
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.7e-20 102.1 86 67.4
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.2e-18 97.1 141 46.8
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 4.5e-18 95.1 53 81.1
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 1.7e-17 93.2 80 58.8
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 5.5e-08 61.6 145 37.9


User provided reference genes

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