Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.6e-70 268.1 166 100.0
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 8.1e-67 257.3 163 98.8
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 6.8e-66 254.2 163 95.7
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.2e-65 253.4 163 96.9
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.2e-63 245.4 163 94.5
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 4.3e-60 235.0 133 92.5
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.6e-46 189.9 151 83.4
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 3.9e-45 185.3 127 78.0
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 5.1e-45 184.9 121 77.7
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 8.7e-45 184.1 122 77.0
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 8.7e-45 184.1 130 73.1
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.1e-44 183.7 125 77.6
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 2.5e-44 182.6 120 76.7
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.6e-44 181.4 120 76.7
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.6e-44 181.4 120 76.7
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 9.6e-44 180.6 118 79.7
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.6e-43 179.9 119 77.3
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.6e-43 179.9 119 77.3
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.6e-43 179.9 126 75.4
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.6e-43 179.9 126 75.4
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.6e-43 179.9 119 79.0
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.8e-43 179.1 126 74.6
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 2.8e-43 179.1 120 78.3
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 3.6e-43 178.7 115 80.0
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 4.8e-43 178.3 127 74.0
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.2e-43 177.9 126 74.6
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 6.2e-43 177.9 120 76.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 8.1e-43 177.6 118 78.0
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 8.1e-43 177.6 127 73.2
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 8.1e-43 177.6 118 77.1
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 8.1e-43 177.6 126 73.8
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 8.1e-43 177.6 122 75.4
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.1e-42 177.2 118 78.0
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.4e-42 176.8 124 74.2
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.8e-42 176.4 127 72.4
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-42 176.4 120 75.8
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.8e-42 176.4 120 75.8
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 3.1e-42 175.6 132 74.2
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 4.0e-42 175.3 115 77.4
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 5.3e-42 174.9 118 77.1
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 6.9e-42 174.5 128 74.2
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 6.9e-42 174.5 118 76.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 9.0e-42 174.1 118 75.4
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 9.0e-42 174.1 122 74.6
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.2e-41 173.7 120 74.2
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.5e-41 173.3 135 71.1
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.6e-41 172.6 127 70.1
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 3.4e-41 172.2 123 69.1
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 3.4e-41 172.2 121 72.7
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 3.4e-41 172.2 120 74.2
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 3.4e-41 172.2 120 73.3
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 3.4e-41 172.2 120 73.3
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 4.5e-41 171.8 121 72.7
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 4.5e-41 171.8 121 71.9
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 5.8e-41 171.4 127 72.4
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 5.8e-41 171.4 119 76.5
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 5.8e-41 171.4 132 72.7
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 7.6e-41 171.0 121 72.7
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 9.9e-41 170.6 120 73.3
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 9.9e-41 170.6 121 71.1
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 9.9e-41 170.6 120 75.8
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.3e-40 170.2 127 70.9
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.7e-40 169.9 121 71.1
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.2e-40 169.5 121 69.4
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.2e-40 169.5 118 75.4
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.2e-40 169.5 118 75.4
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.2e-40 169.5 121 70.2
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.2e-40 169.5 121 70.2
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.2e-40 169.5 121 70.2
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.2e-40 169.5 121 70.2
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.2e-40 169.5 121 71.1
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 2.9e-40 169.1 121 71.1
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.9e-40 169.1 123 68.3
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 3.8e-40 168.7 121 70.2
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.9e-40 168.3 121 69.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.9e-40 168.3 121 68.6
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 4.9e-40 168.3 120 75.0
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 6.4e-40 167.9 131 66.4
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 8.4e-40 167.5 121 69.4
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 8.4e-40 167.5 122 70.5
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.1e-39 167.2 120 70.8
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.1e-39 167.2 122 72.1
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.4e-39 166.8 119 73.1
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.4e-39 166.0 121 69.4
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.4e-39 166.0 125 71.2
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.2e-39 165.6 121 68.6
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 3.2e-39 165.6 121 66.9
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 3.2e-39 165.6 121 71.1
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 3.2e-39 165.6 121 72.7
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 4.2e-39 165.2 121 71.1
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 4.2e-39 165.2 117 73.5
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 4.2e-39 165.2 122 70.5
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 5.4e-39 164.9 131 65.6
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 5.4e-39 164.9 120 71.7
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 7.1e-39 164.5 118 72.9
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 9.3e-39 164.1 119 70.6
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.2e-38 163.7 120 74.2
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 3.5e-38 162.2 120 67.5
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 4.6e-38 161.8 120 70.0
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.0e-37 160.6 119 70.6
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.3e-37 160.2 130 63.8
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 3.0e-37 159.1 121 66.1
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 3.9e-37 158.7 120 67.5
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 6.7e-37 157.9 118 67.8
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 6.7e-37 157.9 121 67.8
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 1.3e-35 153.7 98 80.6
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-35 153.7 120 70.0
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 1.3e-35 153.7 122 62.3
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 2.1e-35 152.9 124 61.3
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 2.1e-35 152.9 119 63.0
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.8e-34 149.8 94 81.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 6.9e-34 147.9 121 68.6
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 9.0e-34 147.5 126 60.3
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 2.6e-33 146.0 191 48.7
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 3.4e-33 145.6 96 79.2
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 4.5e-33 145.2 122 59.0
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 7.6e-33 144.4 94 79.8
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.0e-32 144.1 153 64.7
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 4.9e-32 141.7 119 64.7
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.1e-31 140.6 99 71.7
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.5e-31 138.3 97 72.2
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 4.6e-30 135.2 87 81.6
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 1.0e-29 134.0 121 58.7
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.8e-27 125.9 101 67.3
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.8e-26 123.2 118 54.2
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.8e-26 123.2 126 50.0
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.4e-26 122.9 119 51.3
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.2e-24 116.3 122 48.4
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 6.5e-24 114.8 116 50.0
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.6e-22 110.2 119 48.7
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.3e-20 102.4 99 58.6
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 2.8e-19 99.4 96 52.1
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 2.8e-19 99.4 96 52.1
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.4e-18 97.1 75 65.3
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.5e-17 92.0 97 57.7
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 4.5e-17 92.0 61 75.4
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 4.3e-12 75.5 74 59.5
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 7.4e-12 74.7 74 59.5
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 7.4e-12 74.7 74 59.5
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 7.7e-09 64.7 54 55.6
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 6.5e-08 61.6 96 44.8


User provided reference genes

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