Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.8e-113 412.1 258 100.0
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.8e-113 412.1 258 96.1
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.0e-113 411.8 258 95.7
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.1e-111 406.4 258 87.2
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 2.8e-108 396.0 271 85.2
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.6e-103 380.2 272 80.9
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.3e-92 344.0 204 91.7
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 5.5e-88 328.6 272 69.9
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 2.8e-87 326.2 272 69.9
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.8e-86 323.6 273 68.1
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 5.2e-86 322.0 278 68.7
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 6.8e-86 321.6 272 69.5
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 6.8e-86 321.6 277 68.6
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 8.9e-86 321.2 270 68.9
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.5e-85 320.5 274 67.9
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 2.0e-85 320.1 274 67.5
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.0e-85 320.1 274 67.5
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 9.8e-85 317.8 272 68.4
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 2.4e-83 313.2 274 68.2
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.1e-83 312.8 283 65.7
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 4.1e-83 312.4 274 66.1
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.2e-82 310.8 279 75.3
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.2e-82 310.8 270 68.5
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.2e-82 310.8 283 65.4
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.2e-82 310.8 274 67.9
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 3.5e-82 309.3 283 65.0
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 7.8e-82 308.1 272 66.5
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 3.8e-81 305.8 270 68.1
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 8.6e-81 304.7 276 66.7
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 1.5e-80 303.9 275 72.7
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.5e-80 303.1 274 66.4
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.5e-80 303.1 282 65.2
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 4.3e-80 302.4 273 67.8
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 5.6e-80 302.0 280 65.0
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.6e-79 300.4 281 66.2
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.7e-79 298.9 274 65.3
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 6.1e-79 298.5 280 64.6
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.0e-78 296.2 270 65.9
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.5e-77 293.9 283 63.6
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.3e-76 290.8 262 67.2
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 4.9e-76 288.9 309 60.2
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 6.4e-76 288.5 273 62.6
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 7.0e-75 285.0 273 64.8
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 9.2e-75 284.6 274 65.0
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.0e-74 283.5 249 65.5
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 3.5e-74 282.7 268 63.4
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.0e-73 281.2 298 62.8
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 1.0e-73 281.2 278 61.9
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.7e-73 280.4 274 63.5
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.0e-73 278.9 272 62.9
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 1.5e-72 277.3 277 64.3
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.5e-72 277.3 274 63.9
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.2e-71 274.2 279 61.6
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 4.7e-71 272.3 283 61.1
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 4.7e-71 272.3 283 60.8
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 6.2e-71 271.9 276 63.0
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.4e-70 270.8 284 61.3
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 5.2e-70 268.9 279 61.6
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.0e-69 266.9 271 58.7
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 9.8e-69 264.6 291 57.7
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 8.3e-68 261.5 271 57.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.1e-67 261.2 228 67.5
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.9e-67 260.4 267 61.4
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 2.4e-67 260.0 272 57.4
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 4.1e-67 259.2 272 63.6
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.2e-66 257.7 278 59.4
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.2e-66 257.7 277 60.6
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 3.5e-66 256.1 276 59.1
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 6.0e-66 255.4 278 59.4
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 6.0e-66 255.4 273 61.5
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 6.0e-66 255.4 284 54.9
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.0e-65 254.6 260 58.8
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 1.3e-65 254.2 279 58.4
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 2.3e-65 253.4 254 57.9
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 6.6e-65 251.9 272 59.6
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 1.1e-64 251.1 278 56.1
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.5e-64 250.8 265 58.1
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 9.5e-64 248.1 262 57.6
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 1.6e-63 247.3 268 60.4
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.6e-63 247.3 278 60.1
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.6e-63 247.3 272 58.1
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.1e-63 246.9 267 58.8
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 2.1e-63 246.9 258 59.7
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 6.2e-63 245.4 275 59.3
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 5.2e-62 242.3 266 58.3
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.2e-60 236.9 286 55.9
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.1e-59 234.6 271 55.0
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 5.4e-59 232.3 283 61.8
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 6.6e-57 225.3 273 57.1
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 6.6e-57 225.3 269 61.3
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 8.6e-57 224.9 278 60.4
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 4.3e-56 222.6 212 63.7
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 1.2e-55 221.1 277 58.5
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 2.8e-55 219.9 275 59.3
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 2.8e-55 219.9 275 59.3
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.1e-54 218.0 271 56.8
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.1e-54 218.0 211 59.7
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 3.1e-54 216.5 275 58.5
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 3.1e-54 216.5 275 58.5
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 1.2e-53 214.5 279 59.1
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.5e-53 214.2 275 58.2
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 5.8e-53 212.2 279 57.7
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.9e-52 209.9 198 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 2.4e-51 206.8 234 54.7
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 3.2e-51 206.5 289 53.3
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 7.1e-51 205.3 204 60.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 7.1e-51 205.3 204 60.8
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.0e-49 201.4 281 50.5
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.0e-49 201.4 285 52.6
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.0e-49 201.4 226 54.4
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 3.0e-49 199.9 258 51.2
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 8.7e-49 198.4 286 53.1
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.6e-47 194.1 298 52.0
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.8e-46 190.7 189 60.8
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.8e-46 190.7 230 51.7
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.2e-45 188.0 199 58.3
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 2.6e-45 186.8 241 49.8
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 4.2e-43 179.5 299 46.5
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 7.1e-43 178.7 266 44.4
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 2.3e-41 173.7 265 47.5
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 5.1e-41 172.6 233 48.5
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.1e-40 171.4 232 48.7
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.5e-40 171.0 226 49.1
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 8.1e-39 165.2 215 56.7
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.8e-38 164.1 226 48.7
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.3e-36 157.9 125 70.4
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.8e-36 156.4 127 66.9
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.2e-34 151.4 161 58.4
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.1e-32 144.8 287 43.6
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 1.1e-30 138.3 222 47.3
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 7.1e-27 125.6 271 41.3
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.0e-25 121.7 145 57.9
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 1.1e-24 118.2 274 38.3
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 2.4e-22 110.5 114 60.5
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.3e-16 90.1 85 62.4
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 3.7e-15 86.7 151 36.4
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 4.8e-15 86.3 142 41.5
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.6e-10 71.2 54 72.2
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 9.7e-08 62.0 58 62.1


User provided reference genes

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