Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.5e-27 125.2 156 100.0
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 3.6e-24 115.5 159 85.5
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.0e-23 114.0 159 66.7
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 6.7e-23 111.3 159 62.9
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 9.7e-22 107.5 156 71.2
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 1.6e-16 90.1 51 92.2
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.1e-14 84.0 51 82.4
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 2.0e-14 83.2 50 84.0
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 4.4e-14 82.0 51 76.5
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 5.3e-12 75.1 50 76.0
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 9.1e-12 74.3 51 74.5
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 9.1e-12 74.3 51 74.5
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 9.1e-12 74.3 51 74.5
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.6e-11 73.6 50 72.0
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 2.0e-11 73.2 51 72.5
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 2.0e-11 73.2 51 72.5
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.0e-11 73.2 51 72.5
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.0e-11 73.2 51 72.5
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 2.6e-11 72.8 46 76.1
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 2.6e-11 72.8 50 68.0
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 2.6e-11 72.8 50 72.0
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 4.5e-11 72.0 51 70.6
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 4.5e-11 72.0 51 70.6
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 5.9e-11 71.6 51 70.6
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 7.7e-11 71.2 46 73.9
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 7.7e-11 71.2 50 72.0
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 7.7e-11 71.2 50 70.0
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 7.7e-11 71.2 46 76.1
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 7.7e-11 71.2 50 74.0
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.0e-10 70.9 51 66.7
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.3e-10 70.5 51 70.6
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 1.7e-10 70.1 51 68.6
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 1.7e-10 70.1 50 72.0
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 2.2e-10 69.7 50 70.0
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 2.2e-10 69.7 50 68.0
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 2.2e-10 69.7 50 72.0
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 2.9e-10 69.3 50 68.0
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 2.9e-10 69.3 51 68.6
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 2.9e-10 69.3 51 66.7
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 2.9e-10 69.3 51 66.7
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 3.8e-10 68.9 46 71.7
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 3.8e-10 68.9 46 71.7
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 3.8e-10 68.9 46 71.7
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 3.8e-10 68.9 46 71.7
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 3.8e-10 68.9 46 71.7
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 3.8e-10 68.9 51 66.7
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 3.8e-10 68.9 51 66.7
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 5.0e-10 68.6 49 73.5
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 6.5e-10 68.2 51 66.7
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 6.5e-10 68.2 51 66.7
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 6.5e-10 68.2 50 68.0
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 8.5e-10 67.8 51 62.7
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 8.5e-10 67.8 51 66.7
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.1e-09 67.4 51 62.7
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.1e-09 67.4 50 64.0
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 1.5e-09 67.0 46 67.4
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.5e-09 67.0 51 64.7
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.5e-09 67.0 51 64.7
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 1.5e-09 67.0 51 64.7
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 1.9e-09 66.6 51 72.5
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 1.9e-09 66.6 51 72.5
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 1.9e-09 66.6 51 62.7
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 1.9e-09 66.6 51 64.7
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 1.9e-09 66.6 40 77.5
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 2.5e-09 66.2 51 68.6
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 2.5e-09 66.2 51 68.6
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 2.5e-09 66.2 51 62.7
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 2.5e-09 66.2 50 66.0
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 4.2e-09 65.5 51 64.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 4.2e-09 65.5 51 64.7
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 4.2e-09 65.5 51 58.8
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 5.5e-09 65.1 51 62.7
PSO339G1636 Papaver somniferum HOM05D004188 ORTHO05D004445 5.5e-09 65.1 40 75.0
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 9.4e-09 64.3 50 62.0
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 9.4e-09 64.3 50 64.0
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 9.4e-09 64.3 48 66.7
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 9.4e-09 64.3 46 60.9
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.2e-08 63.9 46 65.2
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 1.6e-08 63.5 50 60.0
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.6e-08 63.5 44 70.5
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 1.6e-08 63.5 51 60.8
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 2.1e-08 63.2 51 60.8
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 2.1e-08 63.2 46 65.2
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 2.1e-08 63.2 51 64.7
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 2.1e-08 63.2 50 64.0
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.1e-08 63.2 46 63.0
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 2.1e-08 63.2 51 58.8
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 2.7e-08 62.8 51 60.8
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 2.7e-08 62.8 51 58.8
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 3.6e-08 62.4 42 71.4
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 3.6e-08 62.4 51 62.7
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 3.6e-08 62.4 41 70.7
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 4.7e-08 62.0 51 58.8
PGR119G2389 Punica granatum HOM05D015476 ORTHO05D004445 6.1e-08 61.6 42 76.2
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.0e-07 60.8 51 62.7
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.0e-07 60.8 51 62.7
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.0e-07 60.8 46 60.9
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 1.0e-07 60.8 51 64.7
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.8e-07 60.1 42 66.7
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.8e-07 60.1 51 58.8
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 1.8e-07 60.1 44 68.2
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 1.8e-07 60.1 45 64.4
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 3.0e-07 59.3 51 58.8
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 5.2e-07 58.5 45 60.0
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 5.2e-07 58.5 50 64.0
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 5.2e-07 58.5 51 54.9
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 6.7e-07 58.2 49 57.1
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 6.7e-07 58.2 50 52.0
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 6.7e-07 58.2 50 52.0
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 6.7e-07 58.2 50 54.0
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 1.2e-06 57.4 42 66.7
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.2e-06 57.4 31 83.9
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.2e-06 57.4 51 56.9
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 1.5e-06 57.0 45 60.0
Cpa.g.sc216.12 Carica papaya HOM05D004188 ORTHO05D004445 2.6e-06 56.2 35 71.4
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 2.6e-06 56.2 42 61.9
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 3.3e-06 55.8 40 65.0
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 3.3e-06 55.8 50 52.0
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 3.3e-06 55.8 51 52.9
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 4.4e-06 55.5 40 65.0
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 4.4e-06 55.5 49 53.1
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 5.7e-06 55.1 45 57.8
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 5.7e-06 55.1 51 54.9
Thecc.09G340200 Theobroma cacao HOM05D004188 ORTHO05D004445 7.5e-06 54.7 31 83.9
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 7.5e-06 54.7 39 64.1
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 9.7e-06 54.3 40 62.5
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 9.7e-06 54.3 42 59.5


User provided reference genes

Program Settings