Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 2155.6 1114 100.0
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 2111.3 1112 97.9
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 2089.7 1135 95.9
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1955.6 1118 91.1
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1719.5 1123 81.7
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1712.2 1124 81.6
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1690.6 1121 80.4
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1604.7 1132 75.4
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1589.3 1129 74.5
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1531.2 1128 71.5
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1530.0 1132 72.5
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1526.5 1132 71.2
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1522.7 1133 71.8
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1520.0 1132 71.2
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1519.2 1129 72.9
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1510.0 1142 71.7
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1508.4 1129 70.9
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1507.7 1143 71.5
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1506.1 1142 71.1
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1503.8 1140 71.6
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1491.1 1130 71.2
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1488.0 1131 70.3
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1486.1 1135 69.5
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1483.8 1127 69.0
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1483.0 1139 70.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1480.7 1129 69.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1480.3 1123 69.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1479.9 1126 69.5
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1479.9 1126 69.9
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1479.5 1128 69.9
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1475.3 1123 69.4
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1473.8 1140 71.0
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1469.1 1138 70.4
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1454.9 1124 68.6
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1454.5 1134 69.9
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1453.3 1134 69.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1451.4 1130 69.6
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1450.3 1126 68.3
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1448.3 1151 68.5
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1438.3 1142 68.7
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1433.7 1128 68.6
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1429.8 1132 69.3
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1423.3 1121 69.0
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1397.9 1135 67.4
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1390.6 1079 68.8
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1389.8 1138 66.6
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1373.6 1084 68.5
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1370.1 1137 66.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1369.8 1084 68.1
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1369.4 1122 65.3
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1369.0 1091 69.1
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1365.9 1136 66.0
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1365.5 1134 65.1
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1362.8 1135 64.9
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1355.5 1139 65.3
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1350.1 1200 63.2
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1347.4 1134 65.0
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1346.6 1136 65.2
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1342.0 1083 68.1
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1341.3 1133 64.5
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1340.1 1157 64.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1332.8 1089 66.1
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1326.2 1141 63.5
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1325.5 1137 64.0
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1324.3 1139 64.2
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1322.8 1137 64.1
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1321.6 1131 64.7
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1316.6 1136 63.8
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1315.1 1115 64.6
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1312.7 1090 65.0
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1310.0 1142 63.5
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1308.9 1099 65.2
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1303.1 1157 62.4
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1301.6 1090 64.8
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1285.0 1081 63.9
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1281.5 1087 64.1
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1279.6 1079 64.1
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1270.8 1085 64.3
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1270.0 1089 63.7
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1268.8 1088 63.8
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1264.6 1117 62.0
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1245.7 1078 62.6
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1238.4 1011 68.3
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1230.3 1079 62.5
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1222.2 938 68.1
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1219.5 939 68.2
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1212.6 1081 61.6
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1193.7 1308 55.0
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1186.8 1017 65.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1148.7 966 65.7
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1141.3 1102 56.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1134.4 1096 56.7
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1131.3 1111 59.2
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1128.2 1137 58.0
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1127.5 1382 50.9
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1119.8 940 64.4
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1088.2 1068 57.4
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1086.2 1134 55.9
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 2.0e-302 1042.7 924 63.2
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.1e-288 996.1 1021 57.0
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.5e-281 973.4 1049 55.5
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 9.3e-276 954.1 884 63.2
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.5e-233 813.9 799 59.4
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.3e-232 808.5 1121 43.4
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.0e-230 803.5 1122 42.3
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 4.2e-228 795.8 1129 42.3
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 3.6e-227 792.7 1094 42.8
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 9.7e-225 784.6 689 62.0
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.3e-224 784.3 1119 42.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 4.1e-223 779.2 996 50.5
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.6e-222 777.3 898 54.1
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 5.9e-222 775.4 803 56.4
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.6e-217 760.0 905 52.8
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 4.2e-212 742.7 646 64.7
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.7e-208 730.7 645 61.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.6e-198 696.0 514 69.8
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.2e-194 682.6 1067 39.3
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 6.6e-181 639.0 515 63.9
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.7e-166 590.5 424 74.1
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.7e-165 587.8 515 61.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 8.7e-165 585.5 426 73.5
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 1.1e-140 505.4 492 58.5
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.9e-133 480.3 400 66.0
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 9.7e-116 422.5 351 65.0
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.1e-106 392.5 222 85.6
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 3.2e-103 380.9 673 39.5
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.5e-100 372.1 828 32.7
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 5.4e-98 363.6 374 55.9
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 3.2e-90 337.8 346 53.2
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.7e-88 332.0 179 86.6
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.8e-85 322.0 332 57.5
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 1.1e-82 312.8 228 73.2
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.3e-79 301.2 163 96.3
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.3e-79 301.2 163 96.3
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 7.8e-73 280.0 513 37.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.5e-71 275.0 1080 24.7
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.8e-69 268.9 198 67.2
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 4.0e-69 267.7 190 75.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 2.1e-65 255.4 1270 22.8
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.3e-63 248.1 135 86.7
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.2e-60 239.6 135 85.9
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.4e-60 238.0 137 83.2
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 9.9e-60 236.5 236 55.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 5.1e-56 224.2 248 52.0
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.2e-50 204.5 537 32.6
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 8.7e-48 196.8 111 83.8
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.3e-47 194.5 111 83.8
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 5.6e-47 194.1 113 81.4
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.6e-41 174.5 141 68.1
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 2.5e-39 168.7 136 74.3
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.6e-38 166.0 140 60.0
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.2e-36 159.8 191 55.0
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.2e-36 159.8 147 62.6
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.6e-36 157.1 88 97.7
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 3.8e-35 154.8 133 71.4
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.2e-34 151.4 136 68.4
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.6e-33 149.4 173 50.9
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 6.0e-33 147.5 77 89.6
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 5.1e-32 144.4 77 85.7
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 3.3e-31 141.7 76 85.5
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 8.2e-30 137.1 117 60.7
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 8.2e-30 137.1 1143 20.9
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.3e-29 134.4 113 66.4
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.7e-27 129.4 150 48.7
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.7e-27 129.4 169 51.5
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-26 126.7 134 51.5
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.5e-23 115.5 102 56.9
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.6e-22 112.8 116 56.9
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 3.1e-21 108.6 114 59.6
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 5.9e-20 104.4 95 56.8
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 2.9e-19 102.1 85 62.4
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 2.8e-14 85.5 88 52.3
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.6e-09 69.7 49 77.6
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 7.9e-09 67.4 43 74.4
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 4.4e-07 61.6 45 62.2
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 8.2e-06 57.4 60 56.7


User provided reference genes

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