Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 3712.2 2016 100.0
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 3484.5 2022 94.2
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 0.0e+00 3474.5 2031 93.4
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 3462.5 2029 93.1
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 0.0e+00 2832.7 1978 80.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 2538.8 1393 96.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 0.0e+00 1920.6 2141 59.1
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 0.0e+00 1714.5 2132 55.4
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 1082.8 2058 43.1
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.8e-311 1073.2 1984 43.1
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 8.8e-309 1064.7 2031 43.2
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 7.2e-303 1045.0 2062 42.6
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 3.6e-262 909.8 1946 40.5
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.0e-253 879.8 2033 39.0
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 3.1e-245 853.6 2036 39.0
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 3.2e-242 843.6 2042 38.2
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.6e-241 841.3 1929 39.6
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.3e-240 838.2 1961 39.6
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.8e-232 811.2 1782 39.8
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.6e-230 804.7 2012 37.7
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.3e-224 784.3 2128 36.2
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 6.9e-221 772.7 1875 38.3
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 3.8e-219 766.9 1859 37.0
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 5.5e-218 763.1 1985 36.7
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.4e-215 753.4 1994 36.4
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 8.2e-206 722.6 2054 36.2
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.4e-205 721.8 2096 35.8
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 5.3e-205 719.9 1244 44.3
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 7.2e-202 709.5 2027 35.6
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 1.8e-200 704.9 1872 36.3
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 5.2e-200 703.4 2008 35.1
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 5.2e-200 703.4 2079 36.2
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.2e-199 702.2 2102 34.0
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.7e-195 688.3 2091 34.5
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.9e-195 687.6 1995 35.1
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 3.6e-193 680.6 2103 34.9
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 4.7e-193 680.2 1991 35.4
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 2.2e-190 671.4 2099 34.5
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 4.8e-190 670.2 783 57.1
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.2e-188 665.6 796 56.3
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.2e-188 665.6 1862 34.9
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 2.3e-179 634.8 1941 35.2
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.0e-179 633.6 2197 33.9
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.1e-178 632.5 2096 34.6
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 8.9e-176 622.9 1939 35.0
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.7e-174 617.5 785 54.1
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 2.0e-172 611.7 2006 32.6
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.0e-171 609.4 2077 33.9
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.3e-171 608.2 1959 34.1
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 3.0e-171 607.8 965 47.5
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 3.1e-168 597.8 1264 41.7
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 5.2e-168 597.0 734 54.1
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.5e-162 578.9 2082 33.4
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 8.9e-160 569.7 1216 40.1
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.1e-154 552.7 957 43.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 5.4e-149 533.9 987 43.9
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 4.6e-148 530.8 1872 32.9
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.0e-147 529.6 830 48.3
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 4.3e-146 524.2 2019 31.7
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 9.6e-146 523.1 1215 37.4
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.3e-145 522.7 1751 32.7
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.8e-145 521.5 2008 32.1
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.6e-145 521.2 1892 32.2
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.4e-144 518.5 1955 32.5
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 5.8e-143 513.8 920 43.5
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 4.2e-141 507.7 792 46.8
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.5e-138 499.2 915 44.2
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.9e-138 498.8 791 46.6
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 4.3e-138 497.7 926 42.2
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 4.3e-138 497.7 912 44.2
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.8e-136 492.3 1026 40.8
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 8.4e-134 483.4 860 44.5
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 7.1e-133 480.3 835 45.3
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.6e-132 479.2 1933 28.9
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 6.0e-132 477.2 688 48.5
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 6.0e-132 477.2 475 65.1
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.0e-131 476.5 2094 30.3
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 2.3e-131 475.3 914 43.0
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 5.3e-128 464.2 836 42.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 3.4e-127 461.5 769 44.2
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.2e-126 458.8 1728 30.3
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.4e-125 456.1 902 40.9
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 5.5e-125 454.1 768 43.6
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 5.5e-125 454.1 768 43.6
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 6.0e-124 450.7 777 44.8
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 3.9e-123 448.0 849 43.1
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 3.9e-123 448.0 878 41.7
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 1.1e-122 446.4 971 39.5
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.1e-122 446.4 660 44.5
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 7.4e-122 443.7 820 45.1
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.6e-121 442.6 816 44.9
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 2.1e-121 442.2 2033 30.1
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.1e-121 442.2 2214 29.9
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.8e-119 434.1 761 41.4
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.2e-118 432.2 2035 29.9
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.0e-118 431.0 782 44.4
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 6.5e-118 430.6 2035 29.7
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.0e-115 423.3 658 43.5
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 2.5e-114 418.7 729 45.1
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.4e-112 412.9 487 57.5
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 3.2e-109 401.7 785 42.7
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.2e-105 389.0 638 43.3
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 5.3e-104 384.4 789 42.0
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 2.6e-103 382.1 904 38.3
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 9.4e-101 373.6 843 39.0
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 7.9e-100 370.5 499 47.7
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 2.6e-87 328.9 889 36.3
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.9e-86 325.5 802 38.3
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 2.9e-78 298.9 705 38.9
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.9e-77 296.2 330 59.7
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.0e-74 286.2 698 34.7
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.1e-68 266.2 261 54.8
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 6.6e-62 244.6 276 62.3
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.5e-58 233.4 1530 26.3
MD08G1160200 Malus domestica HOM05D000237 ORTHO05D006530 3.9e-54 218.8 295 48.8
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 2.1e-52 213.0 617 36.3
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 2.3e-46 193.0 506 34.8
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 4.3e-45 188.7 225 46.2
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 6.2e-44 184.9 221 48.0
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.8e-43 183.3 918 24.6
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 5.8e-42 178.3 1535 25.1
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.6e-39 170.2 129 67.4
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 5.6e-37 161.8 1373 23.9
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 1.8e-35 156.8 203 61.1
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 3.1e-35 156.0 664 28.5
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 6.8e-35 154.8 105 73.3
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 6.6e-30 138.3 757 29.3
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 8.1e-28 131.3 395 31.1
MD08G1160100 Malus domestica HOM05D000237 ORTHO05D006530 7.6e-26 124.8 147 49.7
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.7e-25 123.6 135 48.1
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 7.9e-23 114.8 247 35.2
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 3.8e-17 95.9 76 72.4
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 8.4e-17 94.7 141 43.3
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 3.5e-15 89.4 133 43.6
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.6e-15 89.0 98 51.0
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.0e-11 75.9 146 35.6
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.4e-08 67.4 678 27.4
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.5e-08 65.5 378 26.5
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 6.7e-06 58.5 132 32.6


User provided reference genes

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