Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 3.7e-25 117.5 62 100.0
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 4.9e-25 117.1 61 100.0
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.4e-24 115.5 62 91.9
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 5.6e-21 103.6 85 67.1
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 1.0e-19 99.4 61 82.0
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.6e-18 94.7 61 80.3
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.6e-18 94.7 61 80.3
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 7.5e-18 93.2 61 77.0
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 9.8e-18 92.8 61 75.4
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 9.8e-18 92.8 61 75.4
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.3e-17 92.4 61 75.4
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 1.7e-17 92.0 61 78.7
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 1.7e-17 92.0 61 77.0
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 2.2e-17 91.7 61 78.7
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 2.9e-17 91.3 61 77.0
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 2.9e-17 91.3 61 77.0
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 2.9e-17 91.3 61 77.0
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 2.9e-17 91.3 61 78.7
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.7e-17 90.9 61 77.0
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 4.9e-17 90.5 61 75.4
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.9e-17 90.5 61 78.7
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 4.9e-17 90.5 61 75.4
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 6.4e-17 90.1 61 72.1
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.3e-17 89.7 61 72.1
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.3e-17 89.7 61 72.1
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.3e-17 89.7 61 72.1
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 8.3e-17 89.7 61 72.1
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 8.3e-17 89.7 61 72.1
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.1e-16 89.4 61 75.4
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 1.1e-16 89.4 61 73.8
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 1.4e-16 89.0 61 75.4
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 1.4e-16 89.0 56 76.8
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 1.4e-16 89.0 62 74.2
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.9e-16 88.6 61 75.4
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.9e-16 88.6 61 77.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 1.9e-16 88.6 61 72.1
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 1.9e-16 88.6 61 77.0
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.9e-16 88.6 61 73.8
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 2.4e-16 88.2 62 72.6
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 2.4e-16 88.2 61 72.1
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.4e-16 88.2 61 72.1
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.4e-16 88.2 61 72.1
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 2.4e-16 88.2 61 72.1
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 3.2e-16 87.8 49 87.8
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 4.1e-16 87.4 51 82.4
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 4.1e-16 87.4 61 72.1
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 4.1e-16 87.4 61 73.8
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 5.4e-16 87.0 61 70.5
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 5.4e-16 87.0 61 73.8
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 5.4e-16 87.0 61 72.1
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 7.0e-16 86.7 61 73.8
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 7.0e-16 86.7 61 73.8
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 7.0e-16 86.7 62 75.8
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 9.2e-16 86.3 44 93.2
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 9.2e-16 86.3 61 73.8
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 9.2e-16 86.3 61 73.8
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 9.2e-16 86.3 49 83.7
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 9.2e-16 86.3 61 68.9
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 9.2e-16 86.3 61 73.8
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 9.2e-16 86.3 61 73.8
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 9.2e-16 86.3 56 73.2
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 9.2e-16 86.3 61 72.1
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 1.2e-15 85.9 50 84.0
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.2e-15 85.9 61 73.8
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 72.1
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.6e-15 85.5 61 68.9
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 2.0e-15 85.1 60 75.0
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 2.0e-15 85.1 55 78.2
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 2.0e-15 85.1 59 72.9
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 2.7e-15 84.7 50 80.0
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 3.5e-15 84.3 61 70.5
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 3.5e-15 84.3 64 70.3
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 3.5e-15 84.3 61 67.2
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 3.5e-15 84.3 50 82.0
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 3.5e-15 84.3 64 70.3
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 3.5e-15 84.3 61 72.1
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 4.6e-15 84.0 60 75.0
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 4.6e-15 84.0 61 67.2
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 4.6e-15 84.0 61 67.2
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 4.6e-15 84.0 61 67.2
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 4.6e-15 84.0 56 76.8
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 4.6e-15 84.0 56 76.8
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 4.6e-15 84.0 56 76.8
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 4.6e-15 84.0 61 68.9
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 6.0e-15 83.6 61 67.2
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 7.8e-15 83.2 61 68.9
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 7.8e-15 83.2 61 70.5
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 1.0e-14 82.8 61 67.2
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.0e-14 82.8 61 68.9
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 1.0e-14 82.8 61 67.2
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.0e-14 82.8 51 78.4
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 1.0e-14 82.8 51 78.4
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 1.0e-14 82.8 41 87.8
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.0e-14 82.8 61 67.2
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.0e-14 82.8 50 82.0
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.3e-14 82.4 61 68.9
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 1.3e-14 82.4 64 67.2
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.3e-14 82.4 61 68.9
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.3e-14 82.4 51 78.4
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.7e-14 82.0 49 77.6
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 2.3e-14 81.6 58 72.4
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 3.0e-14 81.3 39 94.9
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 3.0e-14 81.3 39 94.9
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.9e-14 80.9 61 72.1
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 3.9e-14 80.9 66 65.2
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 5.0e-14 80.5 61 65.6
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 5.0e-14 80.5 52 76.9
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 6.6e-14 80.1 58 67.2
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 6.6e-14 80.1 62 69.4
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 8.6e-14 79.7 39 89.7
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 1.5e-13 79.0 41 87.8
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 2.5e-13 78.2 41 80.5
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 3.3e-13 77.8 41 80.5
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 4.3e-13 77.4 57 66.7
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 7.3e-13 76.6 44 79.5
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.2e-12 75.9 59 64.4
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 1.2e-12 75.9 40 80.0
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 8.1e-12 73.2 41 73.2
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 1.8e-11 72.0 39 74.4
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 2.3e-11 71.6 41 75.6
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 2.3e-11 71.6 41 75.6
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 8.9e-11 69.7 40 77.5
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 2.4e-08 61.6 34 85.3
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.2e-08 61.2 79 48.1
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.3e-06 55.8 40 65.0


User provided reference genes

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