Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1625 Fragaria x ananassa HOM05D003197 ORTHO05D003769 2.5e-47 191.8 101 100.0
FvH4_2g26121 Fragaria vesca HOM05D003197 ORTHO05D003769 6.9e-45 183.7 101 96.0
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 5.8e-44 180.6 101 94.1
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 7.1e-42 173.7 101 89.1
QL12p027709 Quercus lobata HOM05D003197 ORTHO05D003769 7.1e-42 173.7 100 89.0
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 7.1e-42 173.7 101 89.1
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 9.3e-42 173.3 101 87.1
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 9.3e-42 173.3 101 89.1
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 9.3e-42 173.3 101 89.1
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 9.3e-42 173.3 101 89.1
Manes.01G223200 Manihot esculenta HOM05D003197 ORTHO05D003769 9.3e-42 173.3 101 89.1
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 1.2e-41 172.9 101 89.1
Dinv10044 Davidia involucrata HOM05D003197 ORTHO05D003769 1.6e-41 172.6 101 89.1
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 1.6e-41 172.6 100 89.0
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.7e-41 171.8 101 88.1
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.7e-41 171.8 101 88.1
Hma1.2p1_0494F.1_g165490 Hydrangea macrophylla HOM05D003197 ORTHO05D003769 2.7e-41 171.8 101 87.1
CiPaw.07G112700 Carya illinoinensis HOM05D003197 ORTHO05D003769 3.5e-41 171.4 101 88.1
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 3.5e-41 171.4 101 87.1
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 3.5e-41 171.4 101 88.1
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 3.5e-41 171.4 101 87.1
PSO731G0008 Papaver somniferum HOM05D003197 ORTHO05D003769 3.5e-41 171.4 101 90.1
PSO764G0236 Papaver somniferum HOM05D003197 ORTHO05D003769 3.5e-41 171.4 101 90.1
Cpa.g.sc27.118 Carica papaya HOM05D003197 ORTHO05D003769 4.6e-41 171.0 101 88.1
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 4.6e-41 171.0 101 88.1
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 4.6e-41 171.0 101 87.1
Gohir.D13G125000 Gossypium hirsutum HOM05D003197 ORTHO05D003769 4.6e-41 171.0 101 88.1
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 4.6e-41 171.0 101 88.1
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 6.0e-41 170.6 100 88.0
Lsat_1_v5_gn_8_164740 Lactuca sativa HOM05D003197 ORTHO05D003769 7.9e-41 170.2 101 86.1
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 7.9e-41 170.2 100 87.0
TAR365G0397 Trochodendron aralioides HOM05D003197 ORTHO05D003769 7.9e-41 170.2 101 89.1
Aqoxy2G02869 Aquilegia oxysepala HOM05D003197 ORTHO05D003769 1.0e-40 169.9 101 88.1
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 1.0e-40 169.9 101 86.1
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 1.0e-40 169.9 101 88.1
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 1.0e-40 169.9 101 86.1
BcaB02g08764 Brassica carinata HOM05D003197 ORTHO05D003769 1.3e-40 169.5 101 85.1
BcaB06g29441 Brassica carinata HOM05D003197 ORTHO05D003769 1.3e-40 169.5 101 85.1
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 1.3e-40 169.5 101 86.1
Eucgr.H01081 Eucalyptus grandis HOM05D003197 ORTHO05D003769 1.3e-40 169.5 101 88.1
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 1.8e-40 169.1 101 86.1
Medtr1g087900 Medicago truncatula HOM05D003197 ORTHO05D003769 2.3e-40 168.7 101 86.1
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.3e-40 168.7 101 85.1
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 2.3e-40 168.7 101 86.1
BcaC02g06979 Brassica carinata HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
BcaC02g12803 Brassica carinata HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
A04p34960 Brassica napus HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
C04p72860 Brassica napus HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
BolC4t28767H Brassica oleracea HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
Carub.0004s3025 Capsella rubella HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
Gorai.013G139800 Gossypium raimondii HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 87.1
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 85.1
SalBow6G6079 Salvia bowleyana HOM05D003197 ORTHO05D003769 3.0e-40 168.3 101 86.1
Haze_04982 Corylus avellana HOM05D003197 ORTHO05D003769 3.9e-40 167.9 101 86.1
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 3.9e-40 167.9 101 85.1
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 3.9e-40 167.9 101 86.1
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 3.9e-40 167.9 101 87.1
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 5.1e-40 167.5 101 85.1
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 5.1e-40 167.5 101 85.1
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 5.1e-40 167.5 101 85.1
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 5.1e-40 167.5 101 85.1
Thhalv10001422m.g Eutrema salsugineum HOM05D003197 ORTHO05D003769 5.1e-40 167.5 101 84.2
Ca_10314_v3 Cicer arietinum L. HOM05D003197 ORTHO05D003769 6.7e-40 167.2 101 86.1
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 8.7e-40 166.8 101 84.2
PGR119G1313 Punica granatum HOM05D003197 ORTHO05D003769 8.7e-40 166.8 101 85.1
CARHR142910 Cardamine hirsuta HOM05D003197 ORTHO05D003769 1.1e-39 166.4 101 83.2
THA.LOC104802185 Tarenaya hassleriana HOM05D003197 ORTHO05D003769 1.1e-39 166.4 101 84.2
GSVIVG01031185001 Vitis vinifera HOM05D003197 ORTHO05D003769 1.1e-39 166.4 101 85.1
AT2G47510 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 1.5e-39 166.0 101 84.2
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 1.9e-39 165.6 101 84.2
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 2.5e-39 165.2 101 83.2
Nn4g25715 Nelumbo nucifera HOM05D003197 ORTHO05D003769 2.5e-39 165.2 101 85.1
SGA_v2.0_scaffold334G49028 Striga asiatica HOM05D003197 ORTHO05D003769 2.5e-39 165.2 101 85.1
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 3.3e-39 164.9 100 84.0
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 3.3e-39 164.9 101 83.2
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 3.3e-39 164.9 101 84.2
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 3.3e-39 164.9 101 84.2
AT5G50950 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 5.7e-39 164.1 101 82.2
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 5.7e-39 164.1 101 84.2
Nn3g21574 Nelumbo nucifera HOM05D003197 ORTHO05D003769 5.7e-39 164.1 101 83.2
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 5.7e-39 164.1 101 83.2
ATR0796G113 Amborella trichopoda HOM05D003197 ORTHO05D003769 7.4e-39 163.7 101 82.2
SGA_v2.0_scaffold2G01379 Striga asiatica HOM05D003197 ORTHO05D003769 7.4e-39 163.7 101 84.2
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 9.6e-39 163.3 101 84.2
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 9.6e-39 163.3 101 84.2
Lalb_Chr21g0309351 Lupinus albus HOM05D003197 ORTHO05D003769 9.6e-39 163.3 100 83.0
HPP92_013736 Vanilla planifolia HOM05D003197 ORTHO05D003769 9.6e-39 163.3 101 84.2
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 1.3e-38 162.9 135 72.6
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 1.3e-38 162.9 101 83.2
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 1.3e-38 162.9 101 83.2
Psat6g163680 Pisum sativum HOM05D003197 ORTHO05D003769 1.3e-38 162.9 101 82.2
MSTRG.18133 Avicennia marina HOM05D003197 ORTHO05D003769 1.6e-38 162.5 99 83.8
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 1.6e-38 162.5 101 82.2
Os03g0337900 Oryza sativa ssp. japonica HOM05D003197 ORTHO05D003769 1.6e-38 162.5 101 84.2
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 1.6e-38 162.5 101 82.2
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 1.6e-38 162.5 101 82.2
CARHR257280 Cardamine hirsuta HOM05D003197 ORTHO05D003769 2.1e-38 162.2 101 81.2
Zm00001eb016240 Zea mays HOM05D003197 ORTHO05D003769 2.1e-38 162.2 101 83.2
AL8G25140 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 2.8e-38 161.8 101 81.2
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 2.8e-38 161.8 101 82.2
Lalb_Chr02g0146531 Lupinus albus HOM05D003197 ORTHO05D003769 3.7e-38 161.4 100 82.0
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 3.7e-38 161.4 101 81.2
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 4.8e-38 161.0 99 83.8
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 6.3e-38 160.6 101 82.2
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 6.3e-38 160.6 101 80.2
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 8.2e-38 160.2 101 81.2
MD03G1292300 Malus domestica HOM05D003197 ORTHO05D003769 8.2e-38 160.2 101 82.2
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 1.1e-37 159.8 101 81.2
CDE12G0403 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 1.1e-37 159.8 99 82.8
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 1.1e-37 159.8 101 80.2
Nitab4.5_0000803g0020 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.4e-37 159.5 101 80.2
Solyc06g009840.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 1.4e-37 159.5 101 80.2
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 1.8e-37 159.1 101 80.2
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 1.8e-37 159.1 101 82.2
Oeu008339.1 Olea europaea HOM05D003197 ORTHO05D003769 1.8e-37 159.1 96 83.3
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 3.1e-37 158.3 101 80.2
TPR.G33977 Trifolium pratense HOM05D003197 ORTHO05D003769 3.1e-37 158.3 101 80.2
CSS0028216 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 4.1e-37 157.9 107 78.5
Eucgr.H01083 Eucalyptus grandis HOM05D003197 ORTHO05D003769 5.3e-37 157.5 99 81.8
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 6.9e-37 157.1 101 79.2
VMungo0720G0285 Vigna mungo HOM05D003197 ORTHO05D003769 1.5e-36 156.0 101 78.2
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 4.5e-36 154.5 101 79.2
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 5.9e-36 154.1 101 78.2
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 6.5e-35 150.6 103 78.6
BolC4t21675H Brassica oleracea HOM05D003197 ORTHO05D003769 1.1e-34 149.8 87 87.4
Phvul.007G217700 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 1.1e-34 149.8 101 77.2
unitig_22.g5232 Utricularia gibba HOM05D003197 ORTHO05D003769 1.1e-34 149.8 124 67.7
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 2.5e-34 148.7 126 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 3.9e-32 141.4 98 73.5
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 5.1e-32 141.0 101 75.2
CBR_g26174 Chara braunii HOM05D003197 ORTHO05D003769 9.7e-31 136.7 101 70.3
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 9.7e-31 136.7 101 72.3
Glyma.05G065550 Glycine max HOM05D003197 ORTHO05D003769 1.3e-30 136.3 87 79.3
PRCOL_00002149 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 2.4e-29 132.1 99 64.6
Atru.chr5.1084 Acer truncatum HOM05D003197 ORTHO05D003769 1.5e-28 129.4 99 71.7
Pp3c20_7140 Physcomitrium patens HOM05D003197 ORTHO05D003769 2.6e-28 128.6 99 66.7
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 4.5e-28 127.9 89 79.8
Pp3c23_19500 Physcomitrium patens HOM05D003197 ORTHO05D003769 1.0e-27 126.7 99 65.7
Carub.0008s1097 Capsella rubella HOM05D003197 ORTHO05D003769 2.2e-27 125.6 94 71.3
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 2.9e-27 125.2 96 65.6
TAR636G2764 Trochodendron aralioides HOM05D003197 ORTHO05D003769 2.9e-27 125.2 90 76.7
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 5.5e-26 120.9 101 67.3
Haze_27469 Corylus avellana HOM05D003197 ORTHO05D003769 9.4e-26 120.2 99 60.6
Mapoly0045s0064 Marchantia polymorpha HOM05D003197 ORTHO05D003769 3.6e-25 118.2 98 63.3
AagrBONN_evm.TU.Sc2ySwM_344.987 Anthoceros agrestis HOM05D003197 ORTHO05D003769 5.1e-24 114.4 99 62.6
CiPaw.08G092800 Carya illinoinensis HOM05D003197 ORTHO05D003769 8.8e-24 113.6 69 84.1
FAN15G1560 Fragaria x ananassa HOM05D003197 ORTHO05D003769 2.0e-23 112.5 59 100.0
PRCOL_00000918 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 5.7e-23 110.9 96 57.3
MCO15G383 Micromonas commoda HOM05D003197 ORTHO05D003769 7.4e-23 110.5 98 58.2
BNapus_Darmor_BZH_scaffold_99p00260 Brassica napus HOM05D003197 ORTHO05D003769 4.8e-22 107.8 75 77.3
Cfa027230 Carpinus fangiana HOM05D003197 ORTHO05D003769 6.3e-22 107.5 100 56.0
SEGI_34724 Sequoiadendron giganteum HOM05D003197 ORTHO05D003769 8.2e-22 107.1 72 75.0
BraA01t04618Z Brassica rapa HOM05D003197 ORTHO05D003769 4.1e-21 104.8 72 77.8
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 6.9e-21 104.0 95 65.3
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.0e-20 102.4 95 65.3
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 2.9e-19 98.6 61 85.2
Dinv24406 Davidia involucrata HOM05D003197 ORTHO05D003769 1.4e-18 96.3 83 65.1
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 4.2e-18 94.7 59 83.1
Cre01.g020223 Chlamydomonas reinhardtii HOM05D003197 ORTHO05D003769 7.2e-18 94.0 100 54.0
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 1.0e-16 90.1 56 82.1
BcaC09g47717 Brassica carinata HOM05D003197 ORTHO05D003769 6.3e-14 80.9 50 78.0
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 6.3e-14 80.9 50 78.0
QL02p103821 Quercus lobata HOM05D003197 ORTHO05D003769 1.6e-12 76.3 50 76.0
Aa31sc170G60 Aethionema arabicum HOM05D003197 ORTHO05D003769 1.5e-10 69.7 49 71.4
Gorai.004G132900 Gossypium raimondii HOM05D003197 ORTHO05D003769 9.4e-10 67.0 40 80.0
BcaC09g47718 Brassica carinata HOM05D003197 ORTHO05D003769 6.1e-09 64.3 52 59.6
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 8.0e-09 63.9 44 65.9
BcaC09g47716 Brassica carinata HOM05D003197 ORTHO05D003769 1.8e-08 62.8 40 72.5
Actinidia21430 Actinidia chinensis HOM05D003197 ORTHO05D003769 6.7e-08 60.8 37 78.4
MCO04G254 Micromonas commoda HOM05D003197 ORTHO05D003769 4.4e-07 58.2 95 36.8


User provided reference genes

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