Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.9e-191 671.0 346 100.0
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 7.8e-189 663.7 346 98.6
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 6.6e-188 660.6 346 98.8
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.6e-186 656.0 347 98.6
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 9.2e-182 640.2 348 96.3
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 3.1e-177 625.2 354 93.2
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 1.9e-166 589.3 360 86.9
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 5.6e-163 577.8 364 84.3
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.3e-162 576.6 345 85.5
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 2.8e-162 575.5 364 83.8
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 6.2e-162 574.3 346 83.8
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 8.1e-162 573.9 356 83.4
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.1e-161 573.5 346 83.5
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 2.4e-161 572.4 346 84.7
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 4.0e-161 571.6 350 84.6
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.5e-160 569.7 346 83.5
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 2.6e-160 568.9 346 84.4
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 7.6e-160 567.4 346 83.5
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 7.6e-160 567.4 346 84.1
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 9.9e-160 567.0 346 83.5
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 1.3e-159 566.6 346 83.5
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.7e-159 566.2 346 82.7
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.2e-159 565.8 346 83.2
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.9e-159 565.5 346 82.9
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.1e-158 560.8 346 82.9
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.1e-158 560.8 346 82.9
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 9.3e-158 560.5 346 82.7
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 9.3e-158 560.5 354 82.5
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.7e-157 558.9 347 81.8
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 7.9e-157 557.4 352 82.1
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 1.0e-156 557.0 346 80.9
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.0e-156 557.0 346 81.2
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.3e-156 556.6 346 82.4
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.8e-156 556.2 351 82.1
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 3.9e-156 555.1 346 82.1
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.9e-156 555.1 348 82.8
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.1e-156 554.7 351 81.8
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 8.7e-156 553.9 346 82.4
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.9e-155 552.7 346 80.6
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 2.5e-155 552.4 346 81.5
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.5e-155 552.4 346 81.5
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 2.5e-155 552.4 346 81.5
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 4.3e-155 551.6 350 82.0
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 4.3e-155 551.6 346 80.9
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 9.6e-155 550.4 346 81.5
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 9.6e-155 550.4 346 81.5
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 9.6e-155 550.4 348 79.9
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 9.6e-155 550.4 346 81.8
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.6e-154 549.7 346 80.6
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 2.1e-154 549.3 346 80.9
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 2.8e-154 548.9 353 80.2
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 2.8e-154 548.9 353 81.6
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 3.7e-154 548.5 348 79.6
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 6.2e-154 547.7 346 81.5
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 6.2e-154 547.7 327 84.1
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 8.1e-154 547.4 353 80.7
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 8.1e-154 547.4 364 78.3
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 8.1e-154 547.4 346 81.2
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.8e-153 546.2 374 76.7
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 1.8e-153 546.2 346 80.9
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.2e-152 543.5 346 79.5
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 2.0e-152 542.7 346 80.1
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 2.0e-152 542.7 346 80.3
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 2.6e-152 542.3 346 79.2
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 2.6e-152 542.3 346 80.1
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 9.9e-152 540.4 344 79.1
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.3e-151 540.0 346 80.1
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.2e-151 539.3 344 79.1
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 2.9e-151 538.9 348 77.6
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 3.8e-151 538.5 348 77.6
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 4.9e-151 538.1 337 81.3
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 4.9e-151 538.1 349 80.2
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 4.9e-151 538.1 346 80.3
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 8.4e-151 537.3 346 79.5
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 8.4e-151 537.3 348 77.3
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 1.4e-150 536.6 351 78.1
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 1.4e-150 536.6 346 79.2
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.4e-150 536.6 346 78.6
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 4.2e-150 535.0 346 78.3
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 4.2e-150 535.0 348 78.2
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 4.2e-150 535.0 346 78.3
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 4.2e-150 535.0 348 78.2
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 4.2e-150 535.0 346 78.3
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 4.2e-150 535.0 346 78.9
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 4.2e-150 535.0 346 79.5
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 5.5e-150 534.6 346 77.5
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 5.5e-150 534.6 351 77.8
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 9.3e-150 533.9 349 77.9
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 2.1e-149 532.7 346 78.3
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 2.7e-149 532.3 348 77.9
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 2.7e-149 532.3 347 77.8
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 4.6e-149 531.6 346 78.3
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 4.6e-149 531.6 346 78.3
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 6.0e-149 531.2 323 82.0
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 7.9e-149 530.8 346 76.9
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 7.9e-149 530.8 332 81.6
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 7.9e-149 530.8 354 76.8
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.3e-148 530.0 355 76.1
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 3.0e-148 528.9 353 76.2
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 3.0e-148 528.9 350 78.0
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 6.7e-148 527.7 320 81.6
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 4.3e-147 525.0 346 77.7
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 7.4e-147 524.2 346 77.5
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 4.8e-146 521.5 354 75.7
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 6.2e-146 521.2 332 80.1
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 1.1e-145 520.4 344 77.3
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 1.8e-145 519.6 387 72.6
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.9e-145 517.7 348 78.2
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 2.0e-144 516.2 346 78.3
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 7.6e-144 514.2 348 78.2
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.9e-140 501.9 347 77.2
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 4.1e-137 491.9 348 74.1
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 5.0e-135 485.0 347 72.9
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 8.5e-135 484.2 346 71.4
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.9e-134 483.0 347 71.5
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 5.5e-134 481.5 352 72.7
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 5.5e-134 481.5 352 72.7
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 4.3e-131 471.9 345 71.6
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 1.1e-129 467.2 346 71.4
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.4e-129 466.8 348 73.9
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 6.9e-129 464.5 304 76.3
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 4.5e-128 461.8 328 69.2
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.3e-127 460.3 351 67.2
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 2.2e-127 459.5 350 68.0
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 5.0e-127 458.4 351 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 6.5e-127 458.0 315 72.1
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.2e-126 455.3 315 71.1
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 5.5e-126 454.9 346 70.2
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.4e-124 450.3 294 78.6
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.4e-124 450.3 294 78.6
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.0e-123 446.4 346 67.6
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 2.6e-123 446.0 315 69.5
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.8e-121 439.9 327 70.0
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 2.0e-112 409.8 276 75.7
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.3e-111 407.1 318 62.9
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 2.9e-111 406.0 327 62.4
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 8.0e-109 397.9 326 62.3
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 5.2e-108 395.2 231 84.8
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 4.2e-102 375.6 229 80.8
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 1.2e-101 374.0 260 75.0
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 2.8e-93 346.3 199 83.9
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 8.9e-84 314.7 298 56.7
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 4.4e-83 312.4 215 74.4
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 4.6e-80 302.4 248 64.9
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 3.3e-70 269.6 185 75.7
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.5e-67 260.8 182 68.7
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.5e-67 260.8 182 68.7
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.7e-61 239.2 165 70.3
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 4.6e-56 222.6 131 81.7
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 7.8e-56 221.9 123 87.8
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 3.9e-55 219.5 119 87.4
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.4e-52 210.3 122 78.7
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 1.9e-46 190.7 164 61.6
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 4.3e-46 189.5 164 62.2
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 2.4e-44 183.7 164 61.0
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.0e-35 154.1 155 52.9
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 2.8e-29 133.7 118 64.4
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 3.4e-27 126.7 92 73.9
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 1.3e-26 124.8 70 85.7
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 4.9e-26 122.9 180 45.0
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.5e-25 120.6 92 69.6
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 3.1e-20 103.6 78 64.1
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 4.5e-19 99.8 71 69.0
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.0e-15 88.6 111 45.9
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 8.8e-15 85.5 78 55.1
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.2e-13 80.9 138 42.0
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 4.2e-09 66.6 42 83.3
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 6.1e-08 62.8 51 62.7
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 5.1e-07 59.7 36 69.4


User provided reference genes

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