Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.9e-236 820.5 412 100.0
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.9e-234 815.5 412 99.3
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.2e-234 814.3 412 99.0
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.2e-233 812.8 412 99.0
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.0e-232 809.7 412 98.5
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 2.9e-222 775.0 412 93.4
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 2.5e-210 735.3 413 88.6
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 3.2e-205 718.4 410 86.3
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 3.0e-203 711.8 413 85.5
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.5e-202 709.5 412 82.3
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.8e-200 702.6 411 83.5
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 4.0e-200 701.4 412 81.3
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 7.6e-199 697.2 412 81.1
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.9e-197 692.6 412 79.4
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.9e-197 692.6 413 82.3
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 9.3e-197 690.3 410 81.0
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 6.0e-196 687.6 413 82.1
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 3.9e-195 684.9 412 80.8
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.5e-194 682.9 412 79.9
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 5.6e-194 681.0 412 80.3
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.3e-193 679.9 414 79.0
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.6e-193 679.5 412 79.4
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.1e-193 679.1 413 80.6
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 2.1e-193 679.1 412 78.9
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 3.6e-193 678.3 414 80.9
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 3.6e-193 678.3 412 79.4
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 6.2e-193 677.6 414 80.4
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 6.2e-193 677.6 411 79.6
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 8.1e-193 677.2 413 80.4
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 1.4e-192 676.4 414 80.4
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.8e-192 676.0 417 79.9
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.8e-192 676.0 412 80.8
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.1e-192 675.2 414 78.5
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 9.0e-192 673.7 409 80.2
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.0e-191 672.5 415 80.5
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.0e-191 672.5 412 79.4
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.4e-191 671.8 412 77.9
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 4.4e-191 671.4 412 78.6
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 4.4e-191 671.4 412 77.9
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 5.8e-191 671.0 412 77.9
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.2e-190 669.1 408 79.4
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 2.9e-190 668.7 415 80.5
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 3.8e-190 668.3 415 81.0
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 4.9e-190 667.9 416 78.6
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 6.4e-190 667.5 416 79.6
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 8.4e-190 667.2 412 78.6
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.4e-189 666.4 415 80.2
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 3.2e-189 665.2 416 79.1
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 4.2e-189 664.8 410 77.3
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 7.1e-189 664.1 412 79.1
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 9.3e-189 663.7 409 78.5
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.1e-188 662.5 412 77.9
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 6.0e-188 661.0 412 75.7
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 3.0e-187 658.7 413 78.5
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 6.6e-187 657.5 413 76.8
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.9e-186 656.0 410 77.3
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.9e-186 656.0 411 78.1
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.9e-186 656.0 415 77.8
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 3.3e-186 655.2 445 73.7
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 7.3e-186 654.1 412 75.7
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 7.3e-186 654.1 412 77.9
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 2.6e-183 645.6 408 77.2
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.9e-182 642.1 412 75.7
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.9e-182 642.1 409 75.3
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 4.9e-182 641.3 414 75.6
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 9.3e-181 637.1 412 75.2
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.7e-180 635.6 455 69.9
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 6.0e-180 634.4 408 74.5
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.1e-178 630.2 413 74.6
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.5e-178 629.8 410 75.6
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.9e-178 629.4 479 66.6
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 4.3e-178 628.2 417 73.4
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 5.6e-178 627.9 413 74.1
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.3e-177 626.7 410 74.1
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.3e-177 626.7 414 74.9
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 3.7e-177 625.2 417 73.4
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 6.2e-177 624.4 410 73.4
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 8.1e-177 624.0 412 73.3
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.1e-176 623.6 410 74.6
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.1e-176 623.6 410 73.4
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.1e-176 623.6 410 73.4
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.1e-176 623.6 403 78.4
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 2.4e-176 622.5 413 74.3
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.4e-176 622.5 413 73.1
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.1e-176 622.1 413 74.6
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.0e-176 621.7 413 73.1
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 5.3e-176 621.3 409 73.8
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 6.9e-176 620.9 410 74.6
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.2e-175 620.2 413 72.9
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.5e-175 619.8 412 72.6
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.5e-175 619.8 413 73.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 2.0e-175 619.4 410 72.7
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 4.5e-175 618.2 410 71.5
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 5.8e-175 617.8 410 72.4
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.8e-175 617.8 413 72.9
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 7.6e-175 617.5 413 73.6
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.3e-174 616.7 410 73.9
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.3e-174 616.7 411 71.5
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.7e-174 616.3 413 73.6
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.8e-174 615.1 417 72.4
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.8e-174 615.1 413 73.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 8.4e-174 614.0 376 77.9
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.4e-173 613.2 412 72.3
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.4e-173 613.2 414 70.8
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.2e-173 611.7 410 73.7
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.5e-173 611.3 410 71.7
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.1e-172 609.4 414 70.8
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.1e-172 609.4 413 71.4
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 7.9e-172 607.4 508 62.2
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 4.8e-169 598.2 466 64.6
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.8e-168 596.3 412 68.9
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 6.5e-166 587.8 420 71.7
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 4.2e-165 585.1 412 67.5
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.3e-158 563.5 418 68.2
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 2.1e-156 556.2 409 66.3
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 2.1e-156 556.2 429 64.6
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.4e-155 553.5 350 78.3
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 3.0e-147 525.8 409 62.6
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 2.0e-146 523.1 306 82.4
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.5e-143 512.3 332 76.2
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.9e-141 506.5 410 59.0
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 5.5e-141 505.0 329 74.5
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.6e-135 486.1 348 69.5
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 8.5e-134 481.1 334 71.0
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 3.2e-133 479.2 409 57.9
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 4.2e-133 478.8 419 60.1
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 3.1e-128 462.6 418 58.4
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 8.5e-126 454.5 418 56.9
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.4e-112 410.6 234 84.2
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.1e-104 384.4 243 76.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.4e-88 330.9 434 44.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 9.6e-77 291.6 181 77.9
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.5e-74 284.3 237 62.9
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 3.4e-74 283.1 391 42.5
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.1e-63 247.3 329 42.9
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.8e-54 217.6 181 64.1
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 9.3e-48 195.3 256 48.0
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 3.6e-47 193.4 113 82.3
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 4.6e-39 166.4 219 43.8
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.1e-37 161.8 125 62.4
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 7.2e-32 142.5 80 82.5
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.4e-30 138.3 86 75.6
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 7.0e-27 125.9 84 69.0
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 5.9e-26 122.9 183 45.4
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.0e-22 112.1 90 62.2
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 2.0e-21 107.8 88 62.5
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 2.0e-21 107.8 88 62.5
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 3.3e-21 107.1 74 64.9
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 3.3e-21 107.1 74 64.9
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 9.7e-21 105.5 74 64.9
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.7e-20 103.6 83 61.4
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 8.2e-20 102.4 88 61.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.6e-18 98.2 81 60.5
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.7e-17 94.7 73 60.3
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 4.2e-16 90.1 66 60.6
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.5e-13 81.6 65 55.4
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 3.7e-12 77.0 86 51.2
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 6.3e-12 76.3 59 59.3
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 3.5e-10 70.5 112 40.2
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 4.5e-10 70.1 112 39.3
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 8.8e-06 55.8 124 34.7


User provided reference genes

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