Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.6e-115 419.5 213 100.0
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.6e-112 408.3 213 97.7
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 1.1e-111 406.8 213 97.2
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.8e-111 406.0 213 96.7
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 2.1e-104 382.5 213 90.6
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 5.8e-102 374.4 213 87.8
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 1.4e-95 353.2 213 83.1
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 2.4e-95 352.4 213 82.6
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.1e-91 339.3 185 93.5
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 3.3e-89 332.0 205 82.9
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 2.1e-88 329.3 212 79.7
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 1.4e-87 326.6 213 77.5
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 5.8e-86 321.2 212 76.9
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 4.9e-85 318.2 211 76.3
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 1.1e-84 317.0 211 77.3
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 9.3e-84 313.9 214 74.3
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 2.7e-83 312.4 215 76.7
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 6.0e-83 311.2 213 74.6
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 1.8e-82 309.7 212 74.5
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 3.0e-82 308.9 213 74.6
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 3.9e-82 308.5 213 74.2
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 6.7e-82 307.8 212 74.5
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 2.5e-81 305.8 213 73.7
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 5.7e-81 304.7 211 74.9
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 1.3e-80 303.5 213 74.2
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 1.6e-80 303.1 213 73.2
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 3.7e-80 302.0 216 73.6
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 6.2e-80 301.2 211 74.4
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 1.1e-79 300.4 212 74.5
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 1.1e-79 300.4 214 72.9
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 1.1e-79 300.4 211 73.9
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 1.4e-79 300.1 211 71.6
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 1.4e-79 300.1 214 73.4
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 1.8e-79 299.7 217 72.8
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 3.1e-79 298.9 213 72.3
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 3.1e-79 298.9 211 73.9
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 4.1e-79 298.5 213 72.8
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 5.3e-79 298.1 213 72.3
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 5.3e-79 298.1 213 71.8
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 6.9e-79 297.7 213 73.2
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 9.0e-79 297.4 213 71.4
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 9.0e-79 297.4 214 72.9
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 1.2e-78 297.0 213 72.8
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 2.0e-78 296.2 211 72.0
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 2.0e-78 296.2 213 72.3
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 3.4e-78 295.4 211 72.0
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 3.4e-78 295.4 211 73.0
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 3.4e-78 295.4 213 71.8
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 4.5e-78 295.0 211 72.0
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 4.5e-78 295.0 213 71.4
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 5.8e-78 294.7 213 72.8
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 7.6e-78 294.3 213 72.8
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 1.0e-77 293.9 213 71.4
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 2.9e-77 292.4 213 72.3
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 2.9e-77 292.4 213 69.5
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 5.0e-77 291.6 213 70.4
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 6.5e-77 291.2 213 71.8
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 1.1e-76 290.4 214 71.5
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.4e-76 290.0 213 71.4
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 5.5e-76 288.1 213 66.7
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 5.5e-76 288.1 213 70.4
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 7.2e-76 287.7 213 68.1
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 7.2e-76 287.7 213 66.2
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 1.2e-75 287.0 213 68.5
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 1.2e-75 287.0 213 70.0
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 1.2e-75 287.0 213 70.4
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 1.6e-75 286.6 221 68.8
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 2.1e-75 286.2 213 68.1
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 2.1e-75 286.2 213 70.4
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 2.1e-75 286.2 205 71.7
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 2.1e-75 286.2 213 70.0
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 2.7e-75 285.8 211 70.6
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 2.7e-75 285.8 213 67.6
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 4.6e-75 285.0 215 67.9
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 6.1e-75 284.6 212 69.8
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 6.1e-75 284.6 213 66.2
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 6.1e-75 284.6 214 70.6
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 7.9e-75 284.3 213 67.6
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 7.9e-75 284.3 205 69.3
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 7.9e-75 284.3 211 72.0
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 5.1e-74 281.6 215 65.6
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 6.7e-74 281.2 212 67.5
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.1e-73 280.4 207 68.6
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 1.5e-73 280.0 204 71.6
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 1.9e-73 279.6 211 68.7
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 5.7e-73 278.1 207 71.0
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 7.4e-73 277.7 213 66.7
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 7.4e-73 277.7 214 68.2
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 9.7e-73 277.3 211 70.6
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 2.2e-72 276.2 213 69.5
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 1.1e-71 273.9 211 70.1
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 1.4e-71 273.5 211 68.2
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 1.8e-71 273.1 214 67.3
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 7.7e-70 267.7 213 65.7
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.3e-69 266.9 206 64.1
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 1.6e-67 260.0 211 66.4
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 3.6e-67 258.8 213 65.3
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 3.9e-66 255.4 211 63.0
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 6.7e-66 254.6 211 62.6
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 1.8e-58 229.9 168 71.4
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 1.3e-48 197.2 230 50.9
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 1.6e-46 190.3 228 50.4
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 3.4e-33 146.0 213 42.7
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 2.8e-32 142.9 212 42.9
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 2.4e-31 139.8 216 38.0
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 4.1e-31 139.0 75 89.3
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 3.8e-29 132.5 214 38.3
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 4.3e-20 102.4 114 50.9
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 1.4e-18 97.4 137 46.7
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 8.9e-18 94.7 120 49.2
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 3.7e-16 89.4 95 52.6
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 1.3e-13 80.9 143 34.3
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 3.2e-07 59.7 35 74.3


User provided reference genes

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