Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0517 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.9e-102 374.4 180 100.0
FAN20G2593 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.2e-70 269.2 165 82.4
FAN24G1382 Fragaria x ananassa HOM05D001174 ORTHO05D001003 1.2e-68 263.5 165 80.6
FvH4_2g00220 Fragaria vesca HOM05D001174 ORTHO05D001003 3.3e-66 255.4 167 79.0
RcHm_v2.0_Chr6g0249511 Rosa chinensis HOM05D001174 ORTHO05D001003 6.9e-64 247.7 166 76.5
FAN19G2507 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.5e-63 245.0 170 75.3
FAN20G0723 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.2e-49 199.5 151 68.2
MD05G1001000 Malus domestica HOM05D001174 ORTHO05D001003 3.7e-41 172.2 172 55.8
Prupe.8G002100 Prunus persica HOM05D001174 ORTHO05D001003 6.5e-38 161.4 178 53.9
Phvul.011G004000 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 1.8e-27 126.7 179 45.3
VMungo1127G0395 Vigna mungo HOM05D001174 ORTHO05D001003 1.8e-27 126.7 179 44.7
Glyma.09G233500 Glycine max HOM05D001174 ORTHO05D001003 6.8e-27 124.8 179 44.1
arahy.Tifrunner.gnm1.ann1.F4SVGY Arachis hypogaea HOM05D001174 ORTHO05D001003 8.8e-27 124.4 179 45.3
arahy.Tifrunner.gnm1.ann1.NM7VB5 Arachis hypogaea HOM05D001174 ORTHO05D001003 8.8e-27 124.4 179 45.3
Glyma.12G003300 Glycine max HOM05D001174 ORTHO05D001003 1.5e-26 123.6 179 44.1
Lj3g0008343 Lotus japonicus HOM05D001174 ORTHO05D001003 5.7e-26 121.7 183 44.3
TPR.G15121 Trifolium pratense HOM05D001174 ORTHO05D001003 2.8e-25 119.4 183 42.1
Ca_00234_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 6.3e-25 118.2 183 42.6
Lalb_Chr15g0079801 Lupinus albus HOM05D001174 ORTHO05D001003 6.3e-25 118.2 181 43.1
Cpa.g.sc138.43 Carica papaya HOM05D001174 ORTHO05D001003 1.4e-24 117.1 185 43.2
RcHm_v2.0_Chr3g0485271 Rosa chinensis HOM05D001174 ORTHO05D001003 2.4e-24 116.3 194 41.2
DCAR_013187 Daucus carota HOM05D001174 ORTHO05D001003 3.1e-24 115.9 184 41.3
FAN23G0797 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.1e-24 115.5 191 42.4
FAN28G1665 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.1e-24 115.5 191 42.4
Medtr4g035550 Medicago truncatula HOM05D001174 ORTHO05D001003 1.2e-23 114.0 183 39.9
FAN19G1419 Fragaria x ananassa HOM05D001174 ORTHO05D001003 1.6e-23 113.6 191 40.8
Manes.13G153700 Manihot esculenta HOM05D001174 ORTHO05D001003 1.6e-23 113.6 185 42.2
Prupe.4G288800 Prunus persica HOM05D001174 ORTHO05D001003 1.6e-23 113.6 190 41.6
MD15G1141000 Malus domestica HOM05D001174 ORTHO05D001003 2.0e-23 113.2 185 42.2
Dinv22066 Davidia involucrata HOM05D001174 ORTHO05D001003 3.5e-23 112.5 184 39.1
TWI79G0263 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 3.5e-23 112.5 185 41.6
Eucgr.F04095 Eucalyptus grandis HOM05D001174 ORTHO05D001003 4.5e-23 112.1 183 42.6
Potri.T045600 Populus trichocarpa HOM05D001174 ORTHO05D001003 5.9e-23 111.7 193 40.4
Sabra19G0000300 Salix brachista HOM05D001174 ORTHO05D001003 5.9e-23 111.7 194 40.2
Sabra19G0012500 Salix brachista HOM05D001174 ORTHO05D001003 5.9e-23 111.7 194 40.2
Actinidia12241 Actinidia chinensis HOM05D001174 ORTHO05D001003 7.8e-23 111.3 184 44.0
HPP92_001195 Vanilla planifolia HOM05D001174 ORTHO05D001003 7.8e-23 111.3 198 39.4
Sc06g0005280 Simmondsia chinensis HOM05D001174 ORTHO05D001003 1.0e-22 110.9 184 40.2
Atru.chr3.1455 Acer truncatum HOM05D001174 ORTHO05D001003 1.7e-22 110.2 185 41.6
Duzib147G0032 Durio zibethinus HOM05D001174 ORTHO05D001003 2.3e-22 109.8 183 42.1
Sopen04g002330 Solanum pennellii HOM05D001174 ORTHO05D001003 2.3e-22 109.8 183 41.5
Thecc.01G146300 Theobroma cacao HOM05D001174 ORTHO05D001003 2.3e-22 109.8 184 40.8
HanXRQChr03g0091961 Helianthus annuus HOM05D001174 ORTHO05D001003 2.9e-22 109.4 178 42.7
Manes.17G016200 Manihot esculenta HOM05D001174 ORTHO05D001003 2.9e-22 109.4 183 42.1
PGR102G2196 Punica granatum HOM05D001174 ORTHO05D001003 2.9e-22 109.4 177 42.9
CSS0035790 Camellia sinensis var. sinensis HOM05D001174 ORTHO05D001003 3.8e-22 109.0 182 40.7
Cc00_g27260 Coffea canephora HOM05D001174 ORTHO05D001003 3.8e-22 109.0 189 41.3
Peaxi162Scf00003g02037 Petunia axillaris HOM05D001174 ORTHO05D001003 3.8e-22 109.0 182 41.8
Peaxi162Scf00577g00006 Petunia axillaris HOM05D001174 ORTHO05D001003 3.8e-22 109.0 182 41.8
Thecc.08G166500 Theobroma cacao HOM05D001174 ORTHO05D001003 3.8e-22 109.0 178 44.9
GSVIVG01000247001 Vitis vinifera HOM05D001174 ORTHO05D001003 3.8e-22 109.0 182 42.3
Cfa020921 Carpinus fangiana HOM05D001174 ORTHO05D001003 5.0e-22 108.6 186 40.9
Solyc04g007270.3 Solanum lycopersicum HOM05D001174 ORTHO05D001003 5.0e-22 108.6 185 40.5
CDE05G0825 Ceratophyllum demersum HOM05D001174 ORTHO05D001003 6.6e-22 108.2 185 44.3
Ciclev10025026m.g Citrus clementina HOM05D001174 ORTHO05D001003 8.6e-22 107.8 184 41.3
Haze_14016 Corylus avellana HOM05D001174 ORTHO05D001003 8.6e-22 107.8 178 39.3
Dinv26829 Davidia involucrata HOM05D001174 ORTHO05D001003 8.6e-22 107.8 180 41.7
CiPaw.16G119600 Carya illinoinensis HOM05D001174 ORTHO05D001003 1.9e-21 106.7 195 39.0
MBI03_g39996_MAGBIO Magnolia biondii HOM05D001174 ORTHO05D001003 1.9e-21 106.7 189 41.8
AUR62006960 Chenopodium quinoa HOM05D001174 ORTHO05D001003 2.5e-21 106.3 185 37.8
Oeu054206.1 Olea europaea HOM05D001174 ORTHO05D001003 2.5e-21 106.3 180 41.7
Potri.013G092000 Populus trichocarpa HOM05D001174 ORTHO05D001003 2.5e-21 106.3 175 38.9
GSVIVG01037120001 Vitis vinifera HOM05D001174 ORTHO05D001003 2.5e-21 106.3 187 40.6
PGR119G0702 Punica granatum HOM05D001174 ORTHO05D001003 4.3e-21 105.5 190 40.0
TWI31G0341 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 4.3e-21 105.5 186 40.9
TAR381G0430 Trochodendron aralioides HOM05D001174 ORTHO05D001003 5.6e-21 105.1 179 41.9
QL10p037912 Quercus lobata HOM05D001174 ORTHO05D001003 7.3e-21 104.8 189 38.6
THA.LOC104813080 Tarenaya hassleriana HOM05D001174 ORTHO05D001003 7.3e-21 104.8 176 44.9
AUR62000609 Chenopodium quinoa HOM05D001174 ORTHO05D001003 9.5e-21 104.4 185 37.8
Ca_09902_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 9.5e-21 104.4 192 38.5
Potri.004G134700 Populus trichocarpa HOM05D001174 ORTHO05D001003 9.5e-21 104.4 198 39.4
CANSAT78G2060 Cannabis sativa HOM05D001174 ORTHO05D001003 1.2e-20 104.0 178 41.6
Gohir.D10G109800 Gossypium hirsutum HOM05D001174 ORTHO05D001003 1.2e-20 104.0 189 39.7
Gorai.011G120900 Gossypium raimondii HOM05D001174 ORTHO05D001003 1.2e-20 104.0 189 39.7
HanXRQChr13g0422081 Helianthus annuus HOM05D001174 ORTHO05D001003 1.2e-20 104.0 178 41.6
EL10Ac4g09733 Beta vulgaris HOM05D001174 ORTHO05D001003 1.6e-20 103.6 186 38.2
Gohir.A10G158722 Gossypium hirsutum HOM05D001174 ORTHO05D001003 1.6e-20 103.6 189 39.7
PSO761G0025 Papaver somniferum HOM05D001174 ORTHO05D001003 2.1e-20 103.2 185 39.5
PGSC0003DMG400006006 Solanum tuberosum HOM05D001174 ORTHO05D001003 2.1e-20 103.2 187 39.0
Ah.02g118200 Amaranthus hybridus HOM05D001174 ORTHO05D001003 2.8e-20 102.8 184 37.0
CsaV3_4G029980 Cucumis sativus L. HOM05D001174 ORTHO05D001003 2.8e-20 102.8 198 39.9
Migut.H02544 Erythranthe guttata HOM05D001174 ORTHO05D001003 2.8e-20 102.8 185 40.5
Gohir.D08G251400 Gossypium hirsutum HOM05D001174 ORTHO05D001003 2.8e-20 102.8 112 48.2
PSO210G1502 Papaver somniferum HOM05D001174 ORTHO05D001003 2.8e-20 102.8 186 39.8
ECA240G2300 Erigeron canadensis HOM05D001174 ORTHO05D001003 3.6e-20 102.4 189 39.7
Cfa021493 Carpinus fangiana HOM05D001174 ORTHO05D001003 4.7e-20 102.1 179 40.2
MELO3C003278.2 Cucumis melo HOM05D001174 ORTHO05D001003 4.7e-20 102.1 196 39.8
Gorai.004G268100 Gossypium raimondii HOM05D001174 ORTHO05D001003 4.7e-20 102.1 112 46.4
CAN.G7.10 Capsicum annuum HOM05D001174 ORTHO05D001003 6.1e-20 101.7 181 40.3
Gohir.A08G231000 Gossypium hirsutum HOM05D001174 ORTHO05D001003 6.1e-20 101.7 112 47.3
unitig_736.g22366 Utricularia gibba HOM05D001174 ORTHO05D001003 6.1e-20 101.7 157 43.9
Eucgr.I00019 Eucalyptus grandis HOM05D001174 ORTHO05D001003 8.0e-20 101.3 188 38.8
Lsat_1_v5_gn_3_120241 Lactuca sativa HOM05D001174 ORTHO05D001003 8.0e-20 101.3 191 39.8
Lj4C822T3 Lonicera japonica HOM05D001174 ORTHO05D001003 1.4e-19 100.5 168 41.1
CARHR032870 Cardamine hirsuta HOM05D001174 ORTHO05D001003 1.8e-19 100.1 102 52.0
AL1G47810 Arabidopsis lyrata HOM05D001174 ORTHO05D001003 2.3e-19 99.8 177 39.5
MSTRG.23235 Avicennia marina HOM05D001174 ORTHO05D001003 4.0e-19 99.0 183 39.3
Carub.0001s3162 Capsella rubella HOM05D001174 ORTHO05D001003 5.2e-19 98.6 184 38.6
Nitab4.5_0002209g0010 Nicotiana tabacum HOM05D001174 ORTHO05D001003 5.2e-19 98.6 184 38.0
FAN26G0168 Fragaria x ananassa HOM05D001174 ORTHO05D001003 6.8e-19 98.2 225 36.0
Aa31LG9G11790 Aethionema arabicum HOM05D001174 ORTHO05D001003 1.2e-18 97.4 178 38.8
SGA_v2.0_scaffold12G06273 Striga asiatica HOM05D001174 ORTHO05D001003 1.2e-18 97.4 186 39.2
vmacro18689 Vaccinium macrocarpon HOM05D001174 ORTHO05D001003 1.2e-18 97.4 186 40.9
Cpa.g.sc249.16 Carica papaya HOM05D001174 ORTHO05D001003 1.5e-18 97.1 185 38.4
Lj5g0023059 Lotus japonicus HOM05D001174 ORTHO05D001003 1.5e-18 97.1 186 38.2
Nitab4.5_0003104g0040 Nicotiana tabacum HOM05D001174 ORTHO05D001003 1.5e-18 97.1 184 38.0
Sp1g28880 Schrenkiella parvula HOM05D001174 ORTHO05D001003 2.0e-18 96.7 99 51.5
Thhalv10006958m.g Eutrema salsugineum HOM05D001174 ORTHO05D001003 2.6e-18 96.3 184 38.6
Psat4g172080 Pisum sativum HOM05D001174 ORTHO05D001003 3.4e-18 95.9 190 38.9
SHI16846 Sapria himalayana HOM05D001174 ORTHO05D001003 5.7e-18 95.1 193 36.8
arahy.Tifrunner.gnm1.ann1.LCQF6T Arachis hypogaea HOM05D001174 ORTHO05D001003 7.5e-18 94.7 190 36.3
arahy.Tifrunner.gnm1.ann1.TP2IXW Arachis hypogaea HOM05D001174 ORTHO05D001003 7.5e-18 94.7 190 36.3
SGA_v2.0_scaffold51G18843 Striga asiatica HOM05D001174 ORTHO05D001003 9.8e-18 94.4 185 37.8
Glyma.10G176200 Glycine max HOM05D001174 ORTHO05D001003 1.7e-17 93.6 175 37.7
Glyma.20G214100 Glycine max HOM05D001174 ORTHO05D001003 2.2e-17 93.2 175 37.7
Ca_25248_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 2.9e-17 92.8 99 51.5
Duzib177G1126 Durio zibethinus HOM05D001174 ORTHO05D001003 4.9e-17 92.0 149 40.9
Lalb_Chr06g0168761 Lupinus albus HOM05D001174 ORTHO05D001003 4.9e-17 92.0 99 50.5
AT1G33420 Arabidopsis thaliana HOM05D001174 ORTHO05D001003 8.3e-17 91.3 177 37.9
Lj7C415T12 Lonicera japonica HOM05D001174 ORTHO05D001003 8.3e-17 91.3 198 35.9
Phvul.007G114100 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 1.1e-16 90.9 175 37.1
CDE05G3524 Ceratophyllum demersum HOM05D001174 ORTHO05D001003 1.8e-16 90.1 128 46.9
Medtr1g076990 Medicago truncatula HOM05D001174 ORTHO05D001003 1.8e-16 90.1 186 37.6
TPR.G5813 Trifolium pratense HOM05D001174 ORTHO05D001003 1.8e-16 90.1 99 50.5
COL.COLO4_35284 Corchorus olitorius HOM05D001174 ORTHO05D001003 7.0e-16 88.2 126 44.4
Sabra04G0083300 Salix brachista HOM05D001174 ORTHO05D001003 2.7e-15 86.3 234 32.9
QL09p001115 Quercus lobata HOM05D001174 ORTHO05D001003 3.5e-15 85.9 145 40.7
ATR1089G105 Amborella trichopoda HOM05D001174 ORTHO05D001003 4.6e-15 85.5 182 38.5
Aqoxy6G00024 Aquilegia oxysepala HOM05D001174 ORTHO05D001003 2.3e-14 83.2 193 33.2
Os01g0877500 Oryza sativa ssp. japonica HOM05D001174 ORTHO05D001003 3.9e-14 82.4 134 44.0
SHI38347 Sapria himalayana HOM05D001174 ORTHO05D001003 3.9e-14 82.4 179 36.9
Oeu046361.1 Olea europaea HOM05D001174 ORTHO05D001003 6.6e-14 81.6 135 43.7
Zm00001eb366330 Zea mays HOM05D001174 ORTHO05D001003 2.5e-13 79.7 134 42.5
MD10G1001300 Malus domestica HOM05D001174 ORTHO05D001003 4.3e-13 79.0 122 42.6
Os11g0234200 Oryza sativa ssp. japonica HOM05D001174 ORTHO05D001003 1.2e-12 77.4 91 47.3
Psat1g113200 Pisum sativum HOM05D001174 ORTHO05D001003 1.6e-12 77.0 131 39.7
Haze_19356 Corylus avellana HOM05D001174 ORTHO05D001003 2.8e-12 76.3 192 33.9
DCAR_013188 Daucus carota HOM05D001174 ORTHO05D001003 8.3e-09 64.7 110 40.9
ECA246G4811 Erigeron canadensis HOM05D000330 ORTHO05D000209 8.3e-09 64.7 45 64.4
Carub.0002s1216 Capsella rubella HOM05D001174 ORTHO05D001003 1.6e-07 60.5 47 57.4
Sabra13G0072500 Salix brachista HOM05D001174 ORTHO05D001003 3.5e-07 59.3 171 29.8
BcaC03g14733 Brassica carinata HOM05D001174 ORTHO05D001003 7.8e-07 58.2 47 55.3
A02p13500 Brassica napus HOM05D001174 ORTHO05D001003 7.8e-07 58.2 47 55.3
C02p21800 Brassica napus HOM05D001174 ORTHO05D001003 7.8e-07 58.2 47 55.3
BolC2t08313H Brassica oleracea HOM05D001174 ORTHO05D001003 7.8e-07 58.2 47 55.3
BraA02t06408Z Brassica rapa HOM05D001174 ORTHO05D001003 7.8e-07 58.2 47 55.3
CBR_g48708 Chara braunii HOM05D001174 ORTHO05D001003 7.8e-07 58.2 52 50.0
Mapoly0006s0138 Marchantia polymorpha HOM05D001174 ORTHO05D001003 1.3e-06 57.4 54 50.0
ATR0021G049 Amborella trichopoda HOM05D001174 ORTHO05D001003 3.0e-06 56.2 62 45.2
Cpa.g.sc2.163 Carica papaya HOM05D001174 ORTHO05D001003 3.0e-06 56.2 48 54.2
Aa31LG2G2880 Aethionema arabicum HOM05D001174 ORTHO05D001003 3.9e-06 55.8 47 55.3
Aqoxy2G00632 Aquilegia oxysepala HOM05D001174 ORTHO05D001003 3.9e-06 55.8 47 51.1
CiPaw.03G074800 Carya illinoinensis HOM05D001174 ORTHO05D001003 3.9e-06 55.8 47 51.1
CDE05G2775 Ceratophyllum demersum HOM05D001174 ORTHO05D001003 3.9e-06 55.8 48 50.0
Sp5g21230 Schrenkiella parvula HOM05D001174 ORTHO05D001003 3.9e-06 55.8 47 53.2
CBR_g137 Chara braunii HOM05D001190 ORTHO05D001764 5.0e-06 55.5 37 62.2
CBR_g139 Chara braunii HOM05D001174 ORTHO05D001003 5.0e-06 55.5 37 62.2
MD13G1047400 Malus domestica HOM05D001174 ORTHO05D001003 6.6e-06 55.1 48 45.8
AL2G23810 Arabidopsis lyrata HOM05D001174 ORTHO05D001003 8.6e-06 54.7 47 51.1
BcaB03g13700 Brassica carinata HOM05D001174 ORTHO05D001003 8.6e-06 54.7 76 38.2
BcaB05g24156 Brassica carinata HOM05D001174 ORTHO05D001003 8.6e-06 54.7 47 48.9


User provided reference genes

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