Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0191 Fragaria x ananassa HOM05D000921 ORTHO05D004153 1.3e-221 772.7 376 100.0
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 3.0e-117 426.0 1058 33.0
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 5.6e-116 421.8 1073 32.6
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 9.6e-116 421.0 1058 32.7
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 1.2e-115 420.6 1058 32.6
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 8.7e-101 371.3 1058 30.5
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 3.5e-86 322.8 266 63.2
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 1.0e-85 321.2 1054 28.3
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 6.7e-85 318.5 266 63.2
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 2.7e-78 296.6 266 59.0
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 4.6e-78 295.8 266 59.0
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 5.1e-77 292.4 266 58.3
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 9.0e-74 281.6 266 55.6
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 1.5e-73 280.8 266 56.4
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 4.5e-73 279.3 266 56.0
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 1.0e-72 278.1 268 57.1
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 1.1e-71 274.6 267 56.6
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.2e-71 273.1 267 55.1
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 3.2e-71 273.1 267 55.1
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 5.5e-71 272.3 266 54.9
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.2e-70 271.2 267 54.7
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 1.6e-70 270.8 267 54.7
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 1.4e-69 267.7 266 54.5
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 2.3e-69 266.9 277 54.2
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 3.0e-69 266.5 267 54.7
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 3.9e-69 266.2 266 55.6
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 3.9e-69 266.2 266 55.6
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 3.9e-69 266.2 266 54.9
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 3.9e-69 266.2 266 54.5
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 6.7e-69 265.4 277 52.7
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 6.7e-69 265.4 266 54.9
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 6.7e-69 265.4 266 55.6
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 1.1e-68 264.6 266 54.1
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 3.3e-68 263.1 266 55.6
Gohir.A08G045265 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.3e-68 263.1 266 52.3
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 4.3e-68 262.7 266 53.8
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 4.3e-68 262.7 266 54.9
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 1.3e-67 261.2 266 55.3
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 1.7e-67 260.8 266 54.1
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 2.2e-67 260.4 266 53.8
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 3.7e-67 259.6 261 55.2
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 6.3e-67 258.8 221 62.9
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 8.2e-67 258.5 266 54.5
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 8.2e-67 258.5 266 53.0
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 1.8e-66 257.3 266 54.9
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 2.4e-66 256.9 265 54.0
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 2.4e-66 256.9 266 54.5
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 2.4e-66 256.9 266 53.8
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 6.9e-66 255.4 266 51.9
Gohir.D08G055600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.2e-65 254.6 266 51.9
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 1.5e-65 254.2 266 53.8
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 2.0e-65 253.8 266 53.8
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 2.6e-65 253.4 266 54.9
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 4.5e-65 252.7 268 53.0
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 5.9e-65 252.3 269 51.7
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 1.7e-64 250.8 266 51.9
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 2.2e-64 250.4 266 53.0
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 2.9e-64 250.0 266 51.5
FAN27G2160 Fragaria x ananassa HOM05D000921 ORTHO05D004153 6.5e-64 248.8 202 67.3
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 1.4e-63 247.7 266 50.4
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 2.5e-63 246.9 266 51.9
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 3.2e-63 246.5 262 52.7
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 5.5e-63 245.7 266 52.3
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 1.2e-62 244.6 266 51.1
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 1.6e-62 244.2 266 50.4
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 2.1e-62 243.8 266 52.6
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 2.7e-62 243.4 247 53.0
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 4.7e-62 242.7 266 50.0
Lj1C56G6 Lonicera japonica HOM05D000921 ORTHO05D004153 4.7e-62 242.7 253 53.0
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 6.1e-62 242.3 298 46.6
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 1.4e-61 241.1 247 52.2
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 1.4e-61 241.1 247 52.2
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 1.4e-61 241.1 247 52.2
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 1.8e-61 240.7 266 49.2
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 3.0e-61 240.0 266 48.1
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 5.1e-61 239.2 298 45.6
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 6.7e-61 238.8 247 51.8
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 8.8e-61 238.4 247 51.8
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 8.8e-61 238.4 264 50.8
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 8.8e-61 238.4 268 48.9
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 8.8e-61 238.4 247 52.2
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 1.5e-60 237.7 247 51.8
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 2.0e-60 237.3 267 49.8
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 2.6e-60 236.9 247 51.8
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 3.3e-60 236.5 266 49.2
Oeu035109.1 Olea europaea HOM05D000921 ORTHO05D004153 3.3e-60 236.5 247 49.8
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 4.4e-60 236.1 266 48.5
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 5.7e-60 235.7 247 51.4
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 5.7e-60 235.7 247 51.4
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 5.7e-60 235.7 247 51.4
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 7.4e-60 235.3 267 50.6
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 7.4e-60 235.3 266 48.9
Sc17g0001140 Simmondsia chinensis HOM05D000921 ORTHO05D004153 9.7e-60 235.0 259 51.7
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 1.3e-59 234.6 255 53.3
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 1.7e-59 234.2 247 51.4
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 1.7e-59 234.2 267 48.3
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 2.2e-59 233.8 266 48.9
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 2.2e-59 233.8 266 50.0
Gohir.A08G187300 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.7e-59 233.0 266 49.2
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 6.3e-59 232.3 266 49.6
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 6.3e-59 232.3 267 47.6
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 8.2e-59 231.9 266 49.6
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 1.8e-58 230.7 266 48.1
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 4.1e-58 229.6 267 47.2
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 7.0e-58 228.8 271 48.3
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 7.0e-58 228.8 247 50.2
arahy.Tifrunner.gnm1.ann1.BT7PUB Arachis hypogaea HOM05D000921 ORTHO05D004153 9.1e-58 228.4 266 48.1
Oeu002265.1 Olea europaea HOM05D000921 ORTHO05D004153 2.0e-57 227.3 218 52.3
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 2.6e-57 226.9 262 48.1
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 3.5e-57 226.5 266 47.7
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 3.8e-56 223.0 269 47.2
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 1.5e-55 221.1 259 48.6
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 9.4e-55 218.4 266 47.4
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 6.1e-54 215.7 254 47.2
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 3.0e-53 213.4 268 46.3
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 5.2e-53 212.6 256 47.3
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 8.8e-53 211.8 267 44.2
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 3.3e-52 209.9 269 45.0
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 8.2e-51 205.3 282 42.9
Cpa.g.sc52.121 Carica papaya HOM05D000921 ORTHO05D004153 7.0e-50 202.2 257 47.1
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 3.5e-49 199.9 268 43.3
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 4.5e-49 199.5 258 43.0
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 5.9e-49 199.1 249 45.0
C03p37700 Brassica napus HOM05D000921 ORTHO05D004153 1.3e-48 198.0 255 45.5
BolC3t16059H Brassica oleracea HOM05D000921 ORTHO05D004153 1.3e-48 198.0 255 45.5
A03p30920 Brassica napus HOM05D000921 ORTHO05D004153 2.2e-48 197.2 253 44.7
BraA03t12271Z Brassica rapa HOM05D000921 ORTHO05D004153 2.2e-48 197.2 255 45.1
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 2.2e-48 197.2 267 45.3
CDE04G2373 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 6.5e-48 195.7 262 45.0
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 2.5e-47 193.7 257 44.0
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 4.2e-47 193.0 263 45.2
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 2.0e-44 184.1 249 45.0
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 9.8e-44 181.8 251 45.8
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 1.7e-43 181.0 255 42.4
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 2.2e-43 180.6 136 66.2
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 2.8e-43 180.3 262 43.1
unitig_61.g26264 Utricularia gibba HOM05D000921 ORTHO05D004153 4.8e-43 179.5 257 42.4
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 8.3e-43 178.7 257 41.6
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 1.4e-42 177.9 258 45.3
Oeu002269.1 Olea europaea HOM05D000921 ORTHO05D004153 4.1e-42 176.4 257 41.2
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 2.7e-41 173.7 263 40.7
A10p01680 Brassica napus HOM05D000921 ORTHO05D004153 5.9e-41 172.6 258 40.3
CDE10G0462 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 5.0e-40 169.5 249 43.4
BcaB01g02481 Brassica carinata HOM05D000921 ORTHO05D004153 3.6e-38 163.3 257 38.9
Os03g0744650 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004153 9.8e-36 155.2 252 38.1
HPP92_021301 Vanilla planifolia HOM05D000921 ORTHO05D004153 2.2e-35 154.1 156 51.3
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 4.9e-35 152.9 107 63.6
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 4.5e-33 146.4 268 37.3
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 5.9e-33 146.0 82 79.3
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 2.9e-32 143.7 258 38.4
SMO370G0001 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 2.9e-32 143.7 258 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 8.6e-32 142.1 256 36.7
SEGI_14501 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 2.5e-31 140.6 272 35.7
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.0e-28 131.0 274 35.8
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.0e-28 131.0 274 35.8
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 4.4e-28 129.8 274 34.7
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 7.8e-25 119.0 253 34.0
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 7.8e-25 119.0 253 34.0
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.6e-22 111.3 261 30.3
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.6e-22 111.3 261 30.3
HPP92_021299 Vanilla planifolia HOM05D000921 ORTHO05D004153 2.0e-17 94.4 85 58.8
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 4.7e-14 83.2 219 28.3
Nn5g27419 Nelumbo nucifera HOM05D000921 ORTHO05D002852 1.4e-10 71.6 39 87.2
Ah.02g111300 Amaranthus hybridus HOM05D000179 ORTHO05D000064 5.4e-10 69.7 159 34.6


User provided reference genes

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