Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 3.7e-162 575.1 350 100.0
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 4.7e-149 531.6 351 89.5
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 8.0e-149 530.8 352 90.1
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 6.3e-146 521.2 352 91.2
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 2.7e-128 462.6 357 83.2
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 9.9e-91 337.8 259 87.3
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 1.3e-87 327.4 356 65.2
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 6.0e-72 275.4 324 53.1
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 6.0e-72 275.4 323 57.3
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 7.9e-72 275.0 370 58.6
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 2.3e-71 273.5 352 51.1
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 1.1e-70 271.2 354 54.8
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 2.8e-69 266.5 354 52.5
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 4.0e-68 262.7 323 52.0
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 1.5e-67 260.8 323 52.9
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 4.5e-67 259.2 362 53.9
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 1.3e-66 257.7 350 52.3
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 3.2e-65 253.1 359 54.9
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 3.2e-65 253.1 359 54.9
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 4.2e-65 252.7 352 52.3
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 4.6e-64 249.2 341 48.4
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 1.8e-63 247.3 356 54.5
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 3.0e-63 246.5 339 55.2
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 3.3e-62 243.0 271 66.1
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 3.3e-62 243.0 270 52.2
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 5.7e-62 242.3 327 51.7
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 1.3e-61 241.1 279 59.1
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 2.2e-61 240.4 352 50.0
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 4.8e-61 239.2 281 57.7
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 6.3e-61 238.8 338 50.0
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 8.2e-61 238.4 279 51.3
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 8.2e-61 238.4 355 45.4
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 1.4e-60 237.7 282 55.0
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 1.8e-60 237.3 372 51.9
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 4.1e-60 236.1 328 56.1
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 4.1e-60 236.1 282 55.7
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 5.3e-60 235.7 277 53.4
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 6.9e-60 235.3 320 48.1
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 9.0e-60 235.0 360 52.8
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 1.5e-59 234.2 318 57.2
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 1.5e-59 234.2 275 56.4
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 1.5e-59 234.2 354 53.4
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 2.0e-59 233.8 278 56.1
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 2.0e-59 233.8 274 54.7
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 3.4e-59 233.0 267 64.4
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 4.5e-59 232.6 296 49.0
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 4.5e-59 232.6 372 49.2
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 7.7e-59 231.9 337 46.3
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 2.9e-58 229.9 341 50.7
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 2.9e-58 229.9 338 51.2
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 3.8e-58 229.6 328 55.2
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 5.0e-58 229.2 330 55.2
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 6.5e-58 228.8 307 46.3
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 1.4e-57 227.6 346 51.2
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 1.9e-57 227.3 305 47.2
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 2.5e-57 226.9 322 51.9
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 2.5e-57 226.9 356 44.4
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 4.2e-57 226.1 325 45.8
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 9.4e-57 224.9 331 52.9
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 9.4e-57 224.9 271 56.5
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 9.4e-57 224.9 362 50.3
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 1.2e-56 224.6 349 51.3
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 1.6e-56 224.2 286 57.3
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 3.6e-56 223.0 304 52.3
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 4.6e-56 222.6 374 50.5
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 4.6e-56 222.6 273 59.0
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 6.1e-56 222.2 259 59.5
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 6.1e-56 222.2 330 46.4
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 1.4e-55 221.1 273 54.9
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 5.1e-55 219.2 307 44.6
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 8.8e-55 218.4 316 51.3
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 8.8e-55 218.4 273 52.4
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 1.1e-54 218.0 278 51.4
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 1.5e-54 217.6 340 51.2
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 1.5e-54 217.6 279 54.5
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 3.3e-54 216.5 275 53.8
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 3.3e-54 216.5 273 52.0
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 5.7e-54 215.7 313 50.5
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 9.7e-54 214.9 329 48.6
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.3e-53 214.5 271 54.6
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 2.2e-53 213.8 327 46.2
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 6.3e-53 212.2 322 51.6
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 1.8e-52 210.7 270 53.3
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 2.6e-51 206.8 350 45.4
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 7.7e-51 205.3 236 54.7
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 1.7e-50 204.1 328 45.4
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 1.4e-49 201.1 268 48.1
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 1.9e-49 200.7 340 42.4
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 7.2e-49 198.7 273 46.2
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 9.4e-49 198.4 275 50.2
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 9.4e-49 198.4 308 44.2
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 6.1e-48 195.7 415 40.0
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 9.7e-46 188.3 341 46.6
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 3.1e-44 183.3 274 43.8
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 4.1e-44 183.0 265 44.2
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 7.0e-44 182.2 300 46.3
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 3.5e-43 179.9 161 61.5
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 1.4e-39 167.9 233 57.9
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 2.8e-37 160.2 187 54.0
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 7.0e-36 155.6 161 55.9
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 9.1e-36 155.2 250 52.8
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 8.0e-32 142.1 128 60.9
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 1.0e-23 115.2 255 36.9
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 7.5e-22 109.0 304 35.9
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 1.3e-21 108.2 120 53.3
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 9.1e-20 102.1 281 32.0
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 5.2e-15 86.3 330 28.2
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 3.4e-14 83.6 55 70.9
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 4.4e-14 83.2 245 31.4
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 2.7e-11 73.9 197 34.0
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 1.0e-10 72.0 45 66.7
C09p65600 Brassica napus HOM05D000552 ORTHO05D003270 1.5e-09 68.2 171 48.5
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 1.9e-09 67.8 51 52.9
Hma1.2p1_0000F.1_g000370 Hydrangea macrophylla HOM05D006924 ORTHO05D008218 3.6e-08 63.5 122 43.4


User provided reference genes

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