Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.1e-309 1064.3 537 100.0
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.5e-303 1045.4 543 98.0
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.8e-277 958.7 535 93.1
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.8e-251 871.3 560 83.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.0e-225 783.9 602 72.6
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.3e-203 712.6 555 70.5
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.1e-169 597.8 333 94.0
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 2.4e-160 569.7 520 59.8
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 3.8e-158 562.4 387 81.7
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.6e-135 486.5 608 48.4
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 7.7e-127 458.4 535 49.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 7.2e-125 451.8 554 48.2
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 8.0e-124 448.4 455 54.3
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 2.6e-122 443.4 552 47.1
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.6e-119 434.1 485 50.5
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.6e-119 434.1 485 50.5
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.0e-118 431.4 521 47.8
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.6e-116 424.1 560 44.8
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 3.0e-115 419.9 564 45.2
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 4.0e-115 419.5 486 48.1
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 4.0e-115 419.5 489 48.5
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.8e-115 418.7 555 45.2
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 8.8e-115 418.3 550 45.3
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 5.7e-114 415.6 564 44.5
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 3.7e-113 412.9 516 45.9
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.2e-111 407.9 600 42.5
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.6e-111 407.5 443 51.0
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.1e-109 401.4 517 45.8
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 2.5e-109 400.2 435 52.0
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.5e-109 400.2 519 44.9
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.1e-108 397.1 514 45.1
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 8.0e-108 395.2 416 53.4
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 6.8e-107 392.1 516 45.5
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.2e-106 391.3 525 45.1
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.6e-106 390.2 513 45.4
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.3e-105 387.9 520 44.4
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.7e-105 387.5 456 47.1
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 4.9e-105 386.0 584 42.6
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 8.3e-105 385.2 522 43.1
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.1e-104 384.8 511 44.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 3.2e-104 383.3 613 40.0
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.2e-103 381.3 529 44.0
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.6e-103 380.9 518 43.6
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.7e-103 380.2 559 43.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.5e-103 379.8 529 44.0
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.5e-103 379.8 427 50.1
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.3e-102 377.1 544 42.3
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.3e-102 377.1 547 42.2
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.6e-102 375.6 409 48.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.5e-101 374.4 618 39.6
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.5e-101 373.6 525 42.7
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 4.3e-101 372.9 579 39.0
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 4.3e-101 372.9 457 44.4
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.1e-100 370.5 504 43.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 4.7e-100 369.4 506 40.5
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 4.7e-100 369.4 540 40.6
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 8.0e-100 368.6 508 43.9
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 3.4e-98 363.2 480 44.2
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 3.4e-98 363.2 510 42.5
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.4e-98 363.2 510 43.3
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.3e-97 361.3 446 46.0
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 7.0e-96 355.5 448 46.2
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 4.6e-95 352.8 437 44.4
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.6e-95 352.8 200 91.0
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 6.0e-95 352.4 559 41.5
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.0e-95 352.4 423 45.9
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 7.8e-95 352.1 536 40.9
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.0e-94 351.7 542 39.5
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.0e-94 351.7 462 44.2
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.3e-94 351.3 483 42.0
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.3e-94 350.5 521 42.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 3.9e-94 349.7 423 46.8
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 5.0e-94 349.4 487 44.8
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 7.3e-93 345.5 568 40.7
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 9.5e-93 345.1 443 43.3
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.6e-92 344.4 526 40.1
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.6e-92 343.2 452 45.6
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.1e-91 340.1 476 43.9
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.1e-91 340.1 593 37.9
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 6.8e-91 339.0 406 48.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 6.8e-91 339.0 549 39.7
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.1e-88 331.6 557 37.2
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.4e-88 331.3 437 42.8
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 7.1e-88 328.9 532 39.3
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.1e-87 327.4 463 42.5
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.1e-87 327.4 584 36.1
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.1e-85 321.6 511 41.1
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 3.3e-85 320.1 453 41.9
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 4.3e-85 319.7 454 41.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.2e-82 311.6 529 38.0
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.9e-81 307.0 310 51.0
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 2.1e-79 300.8 446 40.8
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 3.5e-79 300.1 424 40.6
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 7.8e-79 298.9 524 37.0
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.9e-77 294.3 228 60.1
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 7.3e-77 292.4 442 38.9
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 9.6e-77 292.0 435 39.1
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 4.7e-76 289.7 485 37.3
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 6.9e-75 285.8 433 40.2
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-72 278.5 555 34.6
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-72 278.5 555 34.6
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 4.2e-72 276.6 559 34.5
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 4.2e-72 276.6 555 34.4
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 4.2e-72 276.6 553 34.2
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.2e-71 275.0 559 33.3
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.5e-71 273.5 534 35.0
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 9.6e-69 265.4 425 37.9
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.1e-68 264.2 524 34.9
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.4e-67 261.5 438 36.1
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.3e-62 245.0 224 56.7
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.5e-61 240.7 431 38.3
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 8.1e-60 235.7 387 40.1
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.4e-59 235.0 170 64.7
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.2e-55 221.9 506 32.8
FAN28G1315 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.5e-55 220.3 146 85.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.8e-51 208.0 284 45.1
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.4e-51 207.6 225 47.1
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 2.5e-45 187.6 140 62.9
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.2e-42 178.7 138 76.1
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.0e-41 175.6 142 73.9
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.7e-41 174.9 328 37.2
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-40 171.8 418 33.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.9e-40 171.4 390 34.9
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 5.1e-38 163.3 338 33.1
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.2e-34 152.1 279 35.1
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.0e-34 151.4 289 36.0
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.6e-34 151.0 233 35.6
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 5.9e-34 149.8 241 34.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.3e-33 148.7 279 34.4
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.9e-33 147.5 213 39.0
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.1e-29 135.6 130 50.8
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 7.4e-29 132.9 373 32.4
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.8e-28 131.0 87 64.4
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.8e-28 131.0 87 64.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.8e-28 131.0 276 33.0
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 2.0e-26 124.8 272 31.6
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.7e-23 113.6 276 29.3
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-21 109.0 154 44.2
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-21 107.1 248 30.2
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-17 95.5 268 27.6
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-17 94.4 262 27.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 2.9e-17 94.4 262 27.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 2.9e-17 94.4 262 27.1
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.5e-16 92.0 262 26.0
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.5e-16 92.0 262 26.0
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.5e-08 64.7 55 52.7


User provided reference genes

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