Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.9e-150 536.2 344 100.0
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.9e-150 536.2 344 100.0
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.4e-142 510.0 344 96.2
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.3e-132 476.1 344 84.6
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.0e-119 434.1 325 88.6
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 4.5e-96 355.5 331 72.8
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.0e-95 354.4 315 80.0
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.3e-90 337.4 328 60.7
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 3.7e-90 335.9 331 59.5
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.8e-89 333.6 307 63.8
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.6e-88 330.5 330 59.7
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 5.9e-88 328.6 328 57.9
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 5.9e-88 328.6 311 65.6
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 3.8e-87 325.9 328 61.0
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.1e-86 324.3 308 64.3
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 4.2e-86 322.4 309 62.5
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.2e-85 320.9 229 70.3
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 2.7e-85 319.7 330 54.8
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.6e-85 319.3 227 70.5
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 4.7e-85 318.9 340 55.0
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 6.1e-85 318.5 309 59.9
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.8e-84 317.0 279 62.4
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 5.2e-84 315.5 304 59.2
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 8.8e-84 314.7 315 61.0
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.5e-83 313.9 307 63.2
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.5e-83 313.9 330 65.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 4.4e-83 312.4 303 59.4
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 7.5e-83 311.6 297 68.4
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.8e-82 309.7 303 56.8
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.7e-82 309.3 309 58.3
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 4.8e-82 308.9 292 61.6
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.8e-82 308.9 304 66.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 6.3e-82 308.5 305 64.6
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 6.3e-82 308.5 304 61.2
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.1e-81 307.8 334 59.0
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.1e-81 307.8 356 58.4
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 3.1e-81 306.2 330 57.6
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.1e-81 306.2 301 61.1
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 5.4e-81 305.4 333 52.3
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 9.1e-81 304.7 308 59.1
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 9.1e-81 304.7 303 59.1
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.2e-80 304.3 339 53.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.6e-80 303.9 330 57.6
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.0e-80 303.5 289 58.5
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.0e-80 303.5 272 59.9
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.5e-80 302.8 317 60.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 4.5e-80 302.4 330 57.3
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 4.5e-80 302.4 303 58.4
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 5.9e-80 302.0 328 56.4
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 5.9e-80 302.0 224 68.3
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 5.9e-80 302.0 313 69.6
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.0e-79 301.2 331 64.4
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.7e-79 300.4 266 76.7
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.7e-79 300.4 289 63.0
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 3.8e-79 299.3 310 63.2
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 3.8e-79 299.3 310 69.4
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 5.0e-79 298.9 342 54.7
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 5.0e-79 298.9 303 57.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 8.5e-79 298.1 328 53.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.9e-78 297.0 314 56.7
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.2e-78 296.2 272 66.5
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 3.2e-78 296.2 225 67.6
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 7.2e-78 295.0 223 68.2
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 9.4e-78 294.7 307 58.0
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 9.4e-78 294.7 312 54.8
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.6e-77 293.9 221 67.4
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 2.7e-77 293.1 223 67.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.7e-77 293.1 313 57.5
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 4.7e-77 292.4 277 56.0
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 6.1e-77 292.0 231 67.5
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.4e-76 290.8 303 54.5
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.8e-76 290.4 297 57.9
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 5.2e-76 288.9 308 64.3
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 5.2e-76 288.9 311 62.1
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 6.8e-76 288.5 335 57.3
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 8.8e-76 288.1 314 62.1
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.2e-75 287.7 314 64.0
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 2.0e-75 287.0 310 52.9
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 2.0e-75 287.0 313 56.2
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 3.4e-75 286.2 309 69.9
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 7.5e-75 285.0 227 66.5
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.3e-74 284.3 310 64.8
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.7e-74 283.9 212 67.5
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.8e-74 283.1 310 64.5
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.8e-74 283.1 309 62.8
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.8e-74 283.1 281 65.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 8.3e-74 281.6 307 65.5
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 8.3e-74 281.6 309 62.5
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 8.3e-74 281.6 303 57.4
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.8e-73 280.4 309 61.8
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.8e-73 280.4 303 56.8
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 3.1e-73 279.6 311 60.8
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 4.1e-73 279.3 314 66.6
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 4.1e-73 279.3 251 62.5
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 9.2e-73 278.1 308 64.0
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 9.2e-73 278.1 308 64.0
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 3.5e-72 276.2 286 71.0
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.7e-71 273.9 381 47.5
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 2.9e-71 273.1 220 64.5
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 8.6e-71 271.6 292 55.1
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 6.1e-69 265.4 274 52.9
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 5.7e-67 258.8 235 57.9
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 5.9e-64 248.8 267 54.3
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.0e-63 248.1 235 61.3
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.5e-62 244.2 187 66.3
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.0e-60 238.0 239 68.6
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 2.0e-59 233.8 291 56.0
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 2.6e-59 233.4 245 55.1
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 4.4e-59 232.6 153 70.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.4e-57 226.9 237 51.1
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 5.4e-57 225.7 233 51.5
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 6.0e-56 222.2 203 54.7
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 8.6e-55 218.4 144 76.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.8e-53 213.4 190 54.2
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.1e-46 191.4 188 51.6
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.3e-46 189.9 231 45.0
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.5e-43 181.0 135 60.7
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.2e-40 171.4 141 66.7
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.1e-36 158.3 208 41.3
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 5.8e-35 152.5 177 43.5
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.1e-33 148.3 93 76.3
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.1e-33 148.3 95 74.7
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.5e-30 137.1 313 39.0
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 3.3e-30 136.7 155 45.8
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 4.9e-26 122.9 207 33.3
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.6e-24 117.9 172 43.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-23 112.5 220 30.5
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.3e-21 108.2 68 75.0
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.4e-17 94.7 162 52.5
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.1e-14 85.1 141 39.7
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 6.2e-13 79.3 183 28.4
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 2.0e-11 74.3 209 29.2
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.1e-08 64.3 212 25.0
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.5e-08 63.5 84 45.2
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 6.0e-08 62.8 119 34.5
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.3e-07 61.6 86 52.3
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.5e-06 58.2 96 27.1


User provided reference genes

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