Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 9.9e-144 513.5 263 100.0
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 9.3e-142 506.9 260 99.6
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.0e-140 503.4 263 98.5
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.1e-139 500.0 263 97.3
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.3e-137 491.1 260 97.3
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 8.4e-135 483.8 260 95.8
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 6.7e-116 421.0 247 87.4
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 3.7e-114 415.2 259 82.6
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 5.9e-112 407.9 255 82.0
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.1e-102 377.1 253 75.1
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 2.5e-102 375.9 238 79.8
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 5.5e-102 374.8 255 74.5
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 7.9e-101 370.9 235 79.6
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 3.0e-100 369.0 246 75.6
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.1e-99 367.1 239 77.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 5.7e-99 364.8 255 72.5
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.3e-98 363.6 244 76.2
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.8e-98 362.5 255 71.8
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 2.8e-98 362.5 255 71.8
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.8e-97 359.8 253 73.5
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.8e-97 359.8 253 73.5
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 1.8e-97 359.8 247 74.1
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.8e-97 359.8 257 73.2
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 3.1e-97 359.0 246 74.4
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 5.3e-97 358.2 253 74.7
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 5.3e-97 358.2 243 75.3
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 9.1e-97 357.5 233 77.3
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.2e-96 357.1 273 70.3
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 2.9e-95 352.4 221 80.5
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.9e-95 352.4 237 74.7
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 3.8e-95 352.1 228 77.6
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 8.5e-95 350.9 221 80.5
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.9e-94 349.7 253 72.3
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.9e-94 349.7 229 77.3
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.5e-94 349.4 221 80.1
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 4.2e-94 348.6 250 72.8
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.2e-93 347.1 239 74.9
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 4.7e-93 345.1 246 72.4
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 4.7e-93 345.1 253 69.2
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.8e-92 343.2 256 69.5
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 6.7e-92 341.3 246 72.0
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.5e-91 340.1 249 72.3
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 1.5e-91 340.1 220 76.4
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 2.0e-91 339.7 246 71.1
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.0e-91 339.7 216 78.2
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.4e-91 338.6 210 81.9
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 5.7e-91 338.2 263 67.3
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 7.4e-91 337.8 228 73.7
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 7.4e-91 337.8 227 76.2
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 9.7e-91 337.4 228 76.8
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 9.7e-91 337.4 247 71.7
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 6.3e-90 334.7 229 75.1
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 8.2e-90 334.3 218 76.6
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 8.2e-90 334.3 218 76.6
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.1e-89 334.0 236 73.3
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.1e-89 334.0 214 79.4
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.4e-89 333.6 212 77.8
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.4e-89 333.6 258 68.2
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.4e-89 333.6 218 76.1
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.4e-89 332.8 217 77.0
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.4e-89 332.8 212 77.8
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.1e-89 332.4 253 66.8
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 5.3e-89 331.6 272 66.5
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 7.0e-89 331.3 272 66.2
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.2e-88 330.5 272 65.8
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.2e-88 330.5 223 74.9
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.0e-88 329.7 262 69.1
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 2.0e-88 329.7 218 79.4
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 2.6e-88 329.3 260 69.2
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 2.6e-88 329.3 210 80.5
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.6e-88 329.3 272 66.2
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 2.6e-88 329.3 227 76.2
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 2.6e-88 329.3 209 81.3
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 3.5e-88 328.9 223 74.9
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 5.9e-88 328.2 260 69.2
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 5.9e-88 328.2 234 70.5
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 7.7e-88 327.8 228 71.9
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.0e-87 327.4 218 74.8
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.7e-87 326.6 228 72.4
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.7e-87 326.6 218 74.8
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.7e-87 326.6 260 68.8
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.8e-87 325.5 249 67.1
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.1e-86 323.9 219 77.6
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 1.1e-86 323.9 221 76.9
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.5e-86 322.8 223 73.5
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 3.2e-86 322.4 221 76.0
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 4.2e-86 322.0 223 73.5
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 7.2e-86 321.2 219 76.7
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 7.2e-86 321.2 221 76.5
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 9.4e-86 320.9 205 80.5
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 9.4e-86 320.9 226 71.7
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.6e-85 320.1 205 80.5
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 2.1e-85 319.7 222 76.1
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 2.7e-85 319.3 222 73.4
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.6e-85 318.9 254 64.6
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 3.6e-85 318.9 227 72.2
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 8.0e-85 317.8 258 64.3
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.4e-84 317.0 284 61.3
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 9.7e-83 310.8 217 73.7
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.2e-82 309.7 189 81.0
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 4.1e-81 305.4 222 73.4
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 1.2e-80 303.9 292 58.9
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 4.5e-80 302.0 204 77.0
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 2.7e-77 292.7 165 87.9
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 7.7e-72 274.6 239 62.8
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 4.2e-70 268.9 210 68.6
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 6.1e-69 265.0 210 67.1
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 2.6e-67 259.6 222 60.4
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 2.4e-65 253.1 219 66.2
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.9e-62 243.4 197 61.4
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.8e-60 236.9 205 58.5
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 4.0e-60 235.7 142 80.3
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 9.5e-54 214.5 159 65.4
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.2e-48 197.6 183 54.6
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 3.5e-48 196.1 143 76.2
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 3.5e-48 196.1 202 50.0
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 7.8e-48 194.9 193 53.4
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 1.4e-44 184.1 178 51.1
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 7.5e-43 178.3 206 46.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 4.9e-42 175.6 117 79.5
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 6.4e-42 175.3 158 65.8
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 9.3e-25 118.2 65 92.3
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.2e-24 117.9 143 40.6
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 3.1e-20 103.2 101 59.4
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 4.5e-19 99.4 86 60.5
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 4.6e-16 89.4 53 83.0
Lalb_Chr05g0214601 Lupinus albus HOM05D002462 ORTHO05D002893 7.4e-06 55.5 126 24.6


User provided reference genes

Program Settings