Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1761.5 877 100.0
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 0.0e+00 1696.8 877 96.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1649.8 879 94.3
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1639.0 879 93.5
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 0.0e+00 1474.1 885 83.8
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 0.0e+00 1151.0 890 66.6
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.5e-308 1060.8 574 93.7
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 5.4e-287 991.1 892 59.4
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 3.7e-280 968.4 892 58.1
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.9e-279 966.1 892 58.3
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.7e-278 962.2 890 57.1
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-269 933.7 890 55.8
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 1.3e-269 933.3 895 56.3
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.8e-266 922.9 894 55.8
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.5e-265 919.8 888 55.3
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.0e-261 907.1 895 54.3
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.7e-261 906.4 898 54.1
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.7e-261 906.4 880 55.9
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 2.3e-261 906.0 896 55.0
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.5e-260 903.3 886 55.1
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 5.6e-260 901.4 895 53.7
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.1e-253 878.2 898 52.8
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-249 866.7 893 53.0
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 3.4e-249 865.5 893 53.1
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 4.5e-249 865.1 893 52.9
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 3.0e-245 852.4 908 52.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.3e-243 847.0 661 66.4
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.6e-243 846.7 893 53.0
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 9.0e-242 840.9 892 52.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.6e-241 839.3 894 52.5
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.7e-240 836.6 898 52.1
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.7e-240 836.6 898 52.1
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 2.7e-238 829.3 915 50.5
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 2.3e-237 826.2 914 50.4
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.0e-237 825.9 898 49.9
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 1.1e-234 817.4 894 52.1
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.8e-234 816.6 920 50.5
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 7.7e-233 811.2 917 50.6
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 6.5e-232 808.1 897 50.3
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.4e-231 807.0 871 51.7
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.2e-230 803.9 901 50.5
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-229 800.8 909 49.2
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.7e-224 783.5 915 49.2
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 2.9e-224 782.7 906 49.3
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 8.5e-224 781.2 916 49.5
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.4e-223 780.4 915 49.0
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 6.1e-222 775.0 901 49.2
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.6e-220 769.6 879 48.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.4e-220 768.1 866 50.1
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 7.0e-218 761.5 877 47.2
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 8.5e-216 754.6 881 48.4
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 8.5e-216 754.6 888 48.4
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 9.4e-215 751.1 889 48.5
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.4e-213 747.3 892 48.1
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 6.7e-213 745.0 884 48.1
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 1.5e-212 743.8 883 47.9
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.7e-211 740.3 767 52.0
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.8e-211 739.6 873 47.7
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 6.3e-211 738.4 937 46.0
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 4.1e-210 735.7 883 47.9
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 5.3e-210 735.3 890 45.4
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.6e-209 733.8 924 46.3
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 6.5e-208 728.4 867 48.4
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 8.5e-208 728.0 889 47.1
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.9e-207 726.9 843 49.1
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 7.2e-207 724.9 865 48.1
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.1e-206 723.4 893 47.8
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 3.6e-206 722.6 945 45.0
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 3.6e-206 722.6 880 46.8
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 3.6e-206 722.6 882 46.6
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 2.3e-205 719.9 891 46.0
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.3e-205 719.9 892 45.6
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.0e-205 719.2 881 45.4
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 3.4e-204 716.1 890 46.6
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 9.8e-204 714.5 883 46.3
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.3e-203 714.1 886 47.4
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.7e-203 713.8 886 45.6
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.7e-203 713.8 884 45.7
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.8e-203 713.0 884 46.9
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 8.3e-203 711.4 902 46.0
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.4e-202 710.7 759 51.5
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 9.1e-202 708.0 807 47.6
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 2.7e-201 706.4 869 47.3
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 2.7e-201 706.4 869 47.3
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 2.9e-200 703.0 883 43.8
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.8e-200 702.6 987 43.7
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 5.0e-200 702.2 878 47.5
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 5.0e-200 702.2 901 44.8
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.5e-199 700.7 865 47.4
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 5.5e-199 698.7 778 50.4
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 9.4e-199 698.0 880 47.0
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 8.0e-198 694.9 865 46.9
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.8e-197 693.7 898 45.9
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 4.0e-197 692.6 868 46.4
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 3.1e-194 682.9 868 46.2
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 3.1e-194 682.9 868 46.2
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 4.1e-194 682.6 885 44.6
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 6.8e-189 665.2 892 45.4
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 9.8e-180 634.8 696 50.4
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 2.9e-179 633.3 901 42.5
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.9e-178 630.6 937 42.4
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.9e-176 622.9 813 45.6
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.5e-175 620.2 795 46.3
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.8e-174 616.7 598 53.5
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.3e-167 592.8 762 45.9
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.7e-160 570.9 887 39.1
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 8.4e-155 552.0 880 40.1
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 3.2e-154 550.1 726 44.4
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.6e-153 547.7 609 48.1
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.6e-148 530.4 691 45.6
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 2.4e-146 523.9 687 44.0
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 2.8e-142 510.4 634 46.1
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.5e-135 487.3 893 38.6
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 4.6e-129 466.5 584 47.3
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 5.7e-127 459.5 531 49.0
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.4e-117 428.3 548 45.4
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 5.1e-112 409.8 563 43.5
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 5.7e-111 406.4 340 61.8
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 3.8e-107 393.7 355 54.9
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 9.4e-98 362.5 627 36.4
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 4.1e-93 347.1 642 36.8
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 8.8e-88 329.3 576 37.0
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 5.7e-87 326.6 417 48.0
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 2.2e-86 324.7 1003 29.0
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 8.3e-86 322.8 520 41.3
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 3.2e-82 310.8 179 85.5
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 7.3e-74 283.1 530 34.5
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 6.1e-73 280.0 458 39.5
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 7.5e-71 273.1 637 30.6
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 8.3e-70 269.6 720 29.0
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.2e-69 267.7 260 56.2
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 2.3e-67 261.5 499 35.3
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 3.9e-67 260.8 199 68.3
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 8.0e-65 253.1 331 47.1
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.4e-61 242.3 206 65.5
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 3.5e-60 237.7 185 64.9
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.3e-54 216.5 236 52.1
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.9e-53 215.3 292 45.2
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 6.2e-49 200.3 173 64.7
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.1e-48 199.5 177 57.1
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 5.2e-48 197.2 255 45.5
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.2e-46 191.8 132 65.2
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.4e-40 172.6 163 57.1
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 2.4e-40 171.8 183 54.1
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 6.9e-40 170.2 116 69.0
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 2.6e-39 168.3 123 67.5
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 4.4e-39 167.5 116 67.2
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 7.6e-39 166.8 163 55.8
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.4e-37 162.5 117 64.1
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 7.8e-36 156.8 155 56.1
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-35 156.0 153 56.2
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 1.3e-35 156.0 153 56.2
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-34 152.9 193 43.0
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 4.3e-34 151.0 148 56.1
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 8.1e-33 146.7 153 53.6
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.4e-32 145.2 99 71.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-31 142.9 97 71.1
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-28 132.9 93 68.8
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.5e-26 125.2 264 31.8
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 3.3e-26 124.8 284 28.5
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 8.4e-22 110.2 71 81.7
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.1e-21 109.8 101 56.4
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 7.1e-21 107.1 316 26.9
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 4.6e-20 104.4 79 64.6
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 3.9e-19 101.3 168 39.9
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 8.1e-17 93.6 320 25.0
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 2.0e-15 89.0 118 46.6
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.0e-14 86.7 226 30.1
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 4.9e-14 84.3 116 41.4
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 6.5e-14 84.0 63 69.8
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.4e-13 82.8 80 56.2
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.6e-12 79.3 64 65.6
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.0e-11 76.6 56 64.3
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.6e-09 69.3 70 55.7
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 2.1e-09 68.9 241 26.6
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.8e-09 67.8 154 31.8
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 8.2e-09 67.0 90 46.7
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.1e-08 66.6 49 63.3
MBI15_g10869_MAGBIO Magnolia biondii HOM05D021441 ORTHO05D004344 2.2e-06 58.9 34 70.6
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.0e-06 57.8 79 41.8


User provided reference genes

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