Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.3e-179 631.7 345 100.0
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.8e-178 628.6 345 99.4
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.3e-177 625.5 345 98.8
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.1e-177 625.2 345 98.8
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-176 623.2 345 98.6
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.4e-166 589.7 345 92.8
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 5.4e-150 534.6 345 84.3
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.7e-149 532.3 345 83.8
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 9.6e-147 523.9 344 82.6
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.1e-145 520.4 345 82.0
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.2e-144 516.9 335 83.6
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.8e-143 511.9 345 80.3
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 4.9e-143 511.5 335 82.4
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 8.4e-143 510.8 346 80.6
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.1e-142 510.4 345 80.6
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.4e-142 509.2 345 81.2
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.1e-141 506.1 345 78.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.7e-141 505.8 345 80.9
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.7e-141 505.8 345 78.3
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 6.0e-141 504.6 345 78.6
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 8.7e-140 500.7 337 78.9
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.9e-139 499.6 345 78.0
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 4.3e-139 498.4 345 79.1
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.3e-138 496.9 345 78.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.8e-138 495.0 345 76.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.4e-137 493.4 335 80.3
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 4.0e-137 491.9 345 76.2
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.2e-136 490.3 372 73.9
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.0e-136 489.6 342 78.4
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.9e-135 485.7 343 78.1
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 8.4e-135 484.2 343 77.6
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.9e-134 483.0 345 76.2
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.9e-134 483.0 347 76.9
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 5.5e-134 481.5 345 75.9
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 9.3e-134 480.7 345 76.5
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.5e-133 478.8 345 75.4
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.3e-132 476.9 345 75.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.0e-132 475.7 345 75.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 3.9e-132 475.3 345 75.9
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.5e-131 473.4 345 75.1
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.4e-131 471.1 340 75.9
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 7.4e-131 471.1 337 74.8
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.7e-130 468.8 345 73.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.1e-129 467.2 345 74.5
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.4e-129 466.8 345 73.0
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.3e-129 464.9 345 73.6
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 9.0e-129 464.2 345 74.5
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 2.0e-128 463.0 345 73.6
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.4e-128 462.2 337 73.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.4e-128 462.2 345 73.0
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 8.5e-127 457.6 319 79.0
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.1e-126 457.2 345 73.3
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.6e-125 452.2 345 71.3
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 4.6e-125 451.8 345 71.6
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 8.7e-124 447.6 345 71.9
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.5e-123 446.0 345 71.3
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 9.7e-123 444.1 338 72.5
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.3e-122 443.7 315 75.9
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.2e-122 443.0 345 70.7
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 2.4e-121 439.5 338 71.9
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.1e-121 439.1 345 71.6
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.1e-121 439.1 345 70.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 7.7e-120 434.5 345 69.0
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 3.8e-119 432.2 331 72.8
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 7.2e-118 427.9 345 68.4
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 9.4e-118 427.6 345 69.3
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.6e-117 426.8 345 69.3
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.8e-116 423.3 345 68.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 3.9e-116 422.2 319 73.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.1e-116 421.8 289 77.5
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.5e-115 420.2 345 68.1
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.7e-114 416.8 346 68.2
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.8e-114 416.0 345 67.5
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.1e-113 414.1 346 68.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 3.1e-113 412.5 394 62.4
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.5e-112 410.2 345 67.2
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.5e-112 410.2 345 67.2
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 4.5e-112 408.7 345 67.8
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.2e-111 406.4 345 67.0
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-110 404.1 345 66.7
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 7.2e-110 401.4 328 68.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 9.4e-110 401.0 337 67.7
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.1e-109 399.8 341 65.7
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.5e-107 393.7 345 64.9
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 5.7e-107 391.7 339 64.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.2e-106 389.8 347 62.0
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 64.1
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.0e-104 383.3 289 71.3
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 5.0e-103 378.6 345 66.4
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.9e-102 376.7 345 60.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.2e-101 374.0 373 60.3
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.6e-101 372.5 345 62.3
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.6e-101 372.5 345 62.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 3.6e-101 372.5 345 62.3
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.3e-100 369.8 345 60.9
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.0e-100 369.4 319 67.4
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 5.2e-100 368.6 332 59.9
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.2e-99 367.5 345 60.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.5e-99 367.1 345 60.9
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.4e-99 365.5 343 61.5
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.8e-97 360.1 287 67.9
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.4e-97 359.8 325 60.6
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.6e-96 357.1 348 58.9
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.0e-96 356.7 338 60.7
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.3e-95 354.0 366 57.1
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.5e-94 350.5 350 58.6
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.9e-94 350.1 351 58.1
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.9e-94 350.1 343 61.2
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 5.5e-94 348.6 334 60.2
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.6e-93 347.1 261 71.3
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 4.0e-92 342.4 348 57.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.8e-91 337.8 295 65.1
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 3.5e-88 329.3 340 58.5
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 7.7e-88 328.2 329 57.8
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.2e-87 326.6 321 58.6
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.9e-87 326.2 331 59.2
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.5e-86 323.2 346 56.1
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 9.5e-86 321.2 346 56.6
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 9.5e-86 321.2 346 56.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.1e-85 318.5 348 56.0
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 8.0e-85 318.2 349 55.9
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.4e-84 317.4 346 55.8
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-83 314.3 346 55.2
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 7.5e-83 311.6 345 54.5
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.8e-82 309.7 314 61.1
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-81 307.8 346 54.6
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.6e-80 303.9 343 55.4
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.6e-79 298.1 346 52.9
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.3e-78 295.8 344 54.1
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.6e-78 295.4 334 50.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.6e-77 293.9 357 52.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.1e-77 293.5 343 55.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.1e-77 292.0 345 50.7
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.2e-76 288.9 340 50.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 2.6e-75 286.6 328 52.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 9.8e-75 284.6 343 53.6
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.3e-74 284.3 328 52.7
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 5.4e-73 278.9 345 51.0
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.0e-72 276.9 339 49.3
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 2.3e-71 273.5 285 58.9
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 8.6e-71 271.6 353 49.3
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 3.6e-69 266.2 263 57.4
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 4.7e-69 265.8 303 55.4
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.3e-68 263.5 284 57.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-67 261.2 270 58.5
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.2e-67 261.2 289 53.6
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 9.8e-67 258.1 296 54.7
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.5e-62 244.2 342 41.5
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 4.0e-60 236.1 338 43.5
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 4.0e-60 236.1 330 47.0
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 8.9e-60 235.0 356 48.0
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 7.5e-59 231.9 354 46.6
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 9.9e-59 231.5 291 49.1
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.2e-56 224.6 138 92.0
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.2e-56 224.6 294 45.9
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 7.8e-56 221.9 343 39.7
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 8.4e-50 201.8 174 60.9
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.9e-49 200.7 266 48.9
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.2e-48 198.0 245 53.1
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.1e-41 174.9 153 66.0
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.9e-41 174.1 304 41.4
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 3.0e-39 166.8 175 56.6
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.5e-38 163.7 158 62.0
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 3.1e-36 156.8 281 39.9
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.9e-33 147.5 321 38.3
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.5e-30 137.9 289 39.1
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.9e-25 120.9 172 48.8
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 5.5e-25 119.4 311 34.1
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 5.5e-25 119.4 311 34.1
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 2.9e-18 97.1 111 56.8
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.2e-16 91.7 289 32.5
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 5.1e-15 86.3 111 52.3
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 8.7e-15 85.5 55 83.6
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 7.4e-14 82.4 54 81.5
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 3.6e-08 63.5 102 45.1
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 4.6e-08 63.2 116 43.1


User provided reference genes

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