Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0265 Fragaria x ananassa HOM05D001049 ORTHO05D019174 2.6e-33 144.8 73 100.0
FvH4_1g29080 Fragaria vesca HOM05D001049 ORTHO05D019174 9.7e-33 142.9 71 100.0
FvH4_7g05331 Fragaria vesca HOM05D001049 ORTHO05D019174 1.9e-28 128.6 72 90.3
RcHm_v2.0_Chr2g0162931 Rosa chinensis HOM05D001049 ORTHO05D005951 1.4e-26 122.5 69 87.0
FAN05G1438 Fragaria x ananassa HOM05D001049 ORTHO05D005951 2.2e-24 115.2 68 83.8
FAN01G0915 Fragaria x ananassa HOM05D001049 ORTHO05D019174 2.4e-23 111.7 73 79.5
FAN03G1095 Fragaria x ananassa HOM05D001049 ORTHO05D019174 2.4e-23 111.7 74 79.7
FAN10G0721 Fragaria x ananassa HOM05D001049 ORTHO05D019174 3.1e-23 111.3 73 80.8
Prupe.3G238300 Prunus persica HOM05D001049 ORTHO05D005951 1.2e-22 109.4 69 73.9
FAN02G0215 Fragaria x ananassa HOM05D001049 ORTHO05D005951 2.9e-21 104.8 61 82.0
FvH4_6g45220 Fragaria vesca HOM05D001049 ORTHO05D005951 6.6e-21 103.6 61 80.3
FAN14G1155 Fragaria x ananassa HOM05D001049 ORTHO05D005951 6.6e-21 103.6 61 80.3
MD09G1087200 Malus domestica HOM05D001049 ORTHO05D005951 1.2e-19 99.4 69 71.0
FAN11G1854 Fragaria x ananassa HOM05D001049 ORTHO05D019129 1.4e-18 95.9 52 90.4
MD09G1086400 Malus domestica HOM05D001049 ORTHO05D005951 4.0e-18 94.4 69 68.1
Manes.01G109200 Manihot esculenta HOM05D001049 ORTHO05D005951 5.2e-18 94.0 65 70.8
Atru.chr13.1275 Acer truncatum HOM05D001049 ORTHO05D005951 3.7e-16 87.8 69 62.3
Atru.chr7.1178 Acer truncatum HOM05D001049 ORTHO05D005951 4.9e-16 87.4 69 60.9
Ciclev10000583m.g Citrus clementina HOM05D001049 ORTHO05D005951 1.8e-15 85.5 69 63.8
C03p40010 Brassica napus HOM05D001049 ORTHO05D005951 2.4e-15 85.1 69 59.4
CiPaw.04G041100 Carya illinoinensis HOM05D001049 ORTHO05D005951 2.4e-15 85.1 69 59.4
BcaC05g28235 Brassica carinata HOM05D001049 ORTHO05D005951 3.2e-15 84.7 69 60.9
C05p42860 Brassica napus HOM05D001049 ORTHO05D005951 3.2e-15 84.7 69 60.9
BolC5t33015H Brassica oleracea HOM05D001049 ORTHO05D005951 3.2e-15 84.7 69 60.9
BcaC01g04542 Brassica carinata HOM05D001049 ORTHO05D005951 4.1e-15 84.3 69 59.4
BcaC01g04452 Brassica carinata HOM05D001049 ORTHO05D005951 5.4e-15 84.0 69 59.4
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 5.4e-15 84.0 69 59.4
BolC3t16266H Brassica oleracea HOM05D001049 ORTHO05D005951 5.4e-15 84.0 69 59.4
BraA03t12457Z Brassica rapa HOM05D001049 ORTHO05D005951 5.4e-15 84.0 69 59.4
Lalb_Chr10g0091161 Lupinus albus HOM05D001049 ORTHO05D005951 7.0e-15 83.6 65 63.1
CsaV3_4G004300 Cucumis sativus L. HOM05D001049 ORTHO05D005951 9.2e-15 83.2 69 60.9
Lsat_1_v5_gn_9_32960 Lactuca sativa HOM05D001049 ORTHO05D005951 1.6e-14 82.4 69 60.9
CSS0032537 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D005951 2.0e-14 82.0 69 59.4
Sed0012519 Sechium edule HOM05D001049 ORTHO05D005951 2.0e-14 82.0 69 60.9
Dinv34836 Davidia involucrata HOM05D001049 ORTHO05D005951 2.7e-14 81.6 69 58.0
BcaB06g26057 Brassica carinata HOM05D001049 ORTHO05D005951 3.5e-14 81.3 69 58.0
MD12G1122800 Malus domestica HOM05D001049 ORTHO05D005951 4.6e-14 80.9 72 56.9
Nn3g17797 Nelumbo nucifera HOM05D001049 ORTHO05D005951 5.9e-14 80.5 69 60.9
Aa31LG5G12810 Aethionema arabicum HOM05D001049 ORTHO05D005951 7.8e-14 80.1 69 58.0
Duzib150G0039 Durio zibethinus HOM05D001049 ORTHO05D005951 7.8e-14 80.1 69 55.1
FAN14G2476 Fragaria x ananassa HOM05D001049 ORTHO05D005951 7.8e-14 80.1 59 71.2
THA.LOC104820980 Tarenaya hassleriana HOM05D001049 ORTHO05D005951 7.8e-14 80.1 69 58.0
AL3G11560 Arabidopsis lyrata HOM05D001049 ORTHO05D005951 1.0e-13 79.7 69 56.5
AT3G02280 Arabidopsis thaliana HOM05D001049 ORTHO05D005951 1.0e-13 79.7 69 56.5
Gorai.001G130600 Gossypium raimondii HOM05D001049 ORTHO05D005951 1.0e-13 79.7 69 56.5
Cpa.g.sc179.4 Carica papaya HOM05D001049 ORTHO05D005951 1.3e-13 79.3 69 55.1
Thhalv10011322m.g Eutrema salsugineum HOM05D001049 ORTHO05D005951 1.3e-13 79.3 69 55.1
Potri.004G101100 Populus trichocarpa HOM05D001049 ORTHO05D005951 1.3e-13 79.3 69 59.4
Gohir.D07G121000 Gossypium hirsutum HOM05D001049 ORTHO05D005951 2.3e-13 78.6 69 56.5
Sp3g01340 Schrenkiella parvula HOM05D001049 ORTHO05D005951 2.3e-13 78.6 69 56.5
CANSAT64G1724 Cannabis sativa HOM05D001049 ORTHO05D005951 2.9e-13 78.2 69 53.6
Carub.0003s2478 Capsella rubella HOM05D001049 ORTHO05D005951 2.9e-13 78.2 69 53.6
COL.COLO4_25241 Corchorus olitorius HOM05D001049 ORTHO05D005951 2.9e-13 78.2 69 55.1
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 2.9e-13 78.2 65 58.5
Gohir.A07G116600 Gossypium hirsutum HOM05D001049 ORTHO05D005951 2.9e-13 78.2 69 56.5
Actinidia15879 Actinidia chinensis HOM05D001049 ORTHO05D005951 3.9e-13 77.8 69 59.4
arahy.Tifrunner.gnm1.ann1.NBV3FR Arachis hypogaea HOM05D001049 ORTHO05D005951 5.0e-13 77.4 65 58.5
arahy.Tifrunner.gnm1.ann1.YPBB19 Arachis hypogaea HOM05D001049 ORTHO05D005951 5.0e-13 77.4 65 58.5
EL10Ac2g04590 Beta vulgaris HOM05D001049 ORTHO05D005951 8.6e-13 76.6 71 54.9
CAN.G625.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.1e-12 76.3 60 60.0
Eucgr.J01497 Eucalyptus grandis HOM05D001049 ORTHO05D005951 1.1e-12 76.3 69 58.0
Hund13726 Selenicereus undatus HOM05D001049 ORTHO05D005951 1.1e-12 76.3 69 55.1
CARHR076240 Cardamine hirsuta HOM05D001049 ORTHO05D005951 3.3e-12 74.7 69 52.2
Medtr7g101180 Medicago truncatula HOM05D001049 ORTHO05D005951 3.3e-12 74.7 57 63.2
Solyc02g085820.3 Solanum lycopersicum HOM05D001049 ORTHO05D005951 4.3e-12 74.3 60 61.7
Sopen02g030510 Solanum pennellii HOM05D001049 ORTHO05D005951 4.3e-12 74.3 60 61.7
VMungo1383G0137 Vigna mungo HOM05D001049 ORTHO05D005951 7.3e-12 73.6 61 57.4
Nitab4.5_0005199g0010 Nicotiana tabacum HOM05D001049 ORTHO05D005951 9.5e-12 73.2 60 60.0
PGSC0003DMG400012672 Solanum tuberosum HOM05D001049 ORTHO05D005951 9.5e-12 73.2 60 60.0
HanXRQChr12g0376471 Helianthus annuus HOM05D001049 ORTHO05D005951 1.2e-11 72.8 69 52.2
PGR042G0664 Punica granatum HOM05D001049 ORTHO05D005951 1.6e-11 72.4 69 55.1
Thecc.09G259800 Theobroma cacao HOM05D001049 ORTHO05D005951 1.6e-11 72.4 69 50.7
Aqoxy3G03945 Aquilegia oxysepala HOM05D001049 ORTHO05D005951 2.1e-11 72.0 65 52.3
ECA236G0274 Erigeron canadensis HOM05D001049 ORTHO05D005951 2.1e-11 72.0 63 55.6
Migut.L00308 Erythranthe guttata HOM05D001049 ORTHO05D005951 2.1e-11 72.0 60 58.3
Peaxi162Scf00814g00241 Petunia axillaris HOM05D001049 ORTHO05D005951 2.1e-11 72.0 60 60.0
AUR62008979 Chenopodium quinoa HOM05D001049 ORTHO05D005951 2.8e-11 71.6 69 50.7
SGA_v2.0_scaffold114G32024 Striga asiatica HOM05D001049 ORTHO05D005951 2.8e-11 71.6 60 60.0
Psat3g206240 Pisum sativum HOM05D001049 ORTHO05D005951 3.6e-11 71.2 57 59.6
TAR629G0236 Trochodendron aralioides HOM05D001049 ORTHO05D005951 3.6e-11 71.2 69 52.2
Medtr7g406970 Medicago truncatula HOM05D001049 ORTHO05D005951 4.7e-11 70.9 66 56.1
Lj6g0008823 Lotus japonicus HOM05D001049 ORTHO05D005951 6.1e-11 70.5 63 55.6
Medtr1g102950 Medicago truncatula HOM05D001049 ORTHO05D005951 6.1e-11 70.5 66 56.1
PSO566G0159 Papaver somniferum HOM05D001049 ORTHO05D005951 8.0e-11 70.1 69 52.2
PSO782G4668 Papaver somniferum HOM05D001049 ORTHO05D005951 8.0e-11 70.1 69 52.2
Ah.10g037600 Amaranthus hybridus HOM05D001049 ORTHO05D005951 1.0e-10 69.7 69 49.3
Hma1.2p1_0550F.1_g177330 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 1.0e-10 69.7 69 50.7
GSVIVG01031054001 Vitis vinifera HOM05D001049 ORTHO05D005951 1.0e-10 69.7 65 49.2
Lj1g0028233 Lotus japonicus HOM05D001049 ORTHO05D005951 1.4e-10 69.3 63 55.6
Lj6g0018247 Lotus japonicus HOM05D001049 ORTHO05D005951 1.4e-10 69.3 63 55.6
TWI74G0592 Tripterygium wilfordii HOM05D001049 ORTHO05D005951 1.4e-10 69.3 65 52.3
Phvul.008G004800 Phaseolus vulgaris HOM05D001049 ORTHO05D005951 1.8e-10 68.9 61 55.7
Sabra04G0079000 Salix brachista HOM05D001049 ORTHO05D005951 2.3e-10 68.6 76 50.0
SalBow5G3175 Salvia bowleyana HOM05D001049 ORTHO05D005951 2.3e-10 68.6 69 52.2
vmacro05566 Vaccinium macrocarpon HOM05D001049 ORTHO05D005951 2.3e-10 68.6 78 47.4
CDE05G2905 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 5.2e-10 67.4 69 50.7
Cc07_g08880 Coffea canephora HOM05D001049 ORTHO05D005951 8.9e-10 66.6 63 55.6
Sc11g0008260 Simmondsia chinensis HOM05D001049 ORTHO05D005951 1.2e-09 66.2 68 47.1
HPP92_005481 Vanilla planifolia HOM05D001049 ORTHO05D005951 2.0e-09 65.5 59 55.9
Ca_04065_v3 Cicer arietinum L. HOM05D001049 ORTHO05D005951 2.6e-09 65.1 66 51.5
MELO3C017636.2 Cucumis melo HOM05D001049 ORTHO05D005951 4.4e-09 64.3 57 57.9
TPR.G9733 Trifolium pratense HOM05D001049 ORTHO05D005951 4.4e-09 64.3 57 56.1
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 5.8e-09 63.9 68 48.5
DCAR_029529 Daucus carota HOM05D001049 ORTHO05D005951 9.8e-09 63.2 68 48.5
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 2.4e-07 58.5 64 50.0
Lj1g0012839 Lotus japonicus HOM05D001049 ORTHO05D005951 3.2e-07 58.2 67 47.8
Zm00001eb154050 Zea mays HOM05D001049 ORTHO05D005951 7.0e-07 57.0 69 47.8
CDE05G0709 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 1.2e-06 56.2 64 45.3
Nitab4.5_0001569g0100 Nicotiana tabacum HOM05D001049 ORTHO05D005951 2.0e-06 55.5 89 39.3
SEGI_38409 Sequoiadendron giganteum HOM05D001049 ORTHO05D019174 4.6e-06 54.3 38 60.5
TPR.G33419 Trifolium pratense HOM05D001049 ORTHO05D019174 4.6e-06 54.3 37 67.6
ATR0564G081 Amborella trichopoda HOM05D001049 ORTHO05D005951 7.8e-06 53.5 69 44.9
DCAR_019602 Daucus carota HOM05D001049 ORTHO05D005951 7.8e-06 53.5 73 43.8


User provided reference genes

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