Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 0.0e+00 1147.5 597 100.0
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 0.0e+00 1129.0 605 97.9
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 0.0e+00 1122.8 597 97.2
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 0.0e+00 1122.1 603 96.8
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 0.0e+00 1118.2 617 95.8
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 0.0e+00 1115.9 617 95.6
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 1.1e-310 1069.3 599 92.0
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 1.9e-275 952.2 610 80.7
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 2.4e-270 935.3 607 80.2
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 3.4e-248 861.7 599 74.1
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 2.9e-239 832.0 597 72.7
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 4.1e-238 828.2 610 71.0
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 5.0e-236 821.2 610 70.2
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 6.6e-236 820.8 608 70.4
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 4.3e-235 818.1 610 69.8
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 3.6e-234 815.1 608 69.6
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 6.2e-234 814.3 605 70.6
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 4.0e-233 811.6 610 70.2
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 4.0e-233 811.6 610 69.7
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 2.0e-232 809.3 608 69.9
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 2.2e-231 805.8 611 69.2
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 1.1e-230 803.5 602 70.3
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 1.4e-230 803.1 608 69.4
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 1.4e-230 803.1 610 69.5
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 1.9e-230 802.7 607 70.3
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 2.4e-230 802.4 648 66.0
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 3.2e-230 802.0 613 69.2
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 7.0e-230 800.8 602 68.8
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 1.2e-229 800.0 599 69.4
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 2.7e-229 798.9 607 68.9
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 7.8e-229 797.3 595 70.4
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 1.4e-225 786.6 603 68.8
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 1.8e-225 786.2 608 68.9
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 4.0e-225 785.0 579 70.5
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 1.9e-222 776.2 610 67.4
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 2.4e-222 775.8 602 67.3
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 1.2e-221 773.5 581 70.1
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 1.6e-221 773.1 604 67.4
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 3.5e-221 771.9 606 67.2
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 1.3e-220 770.0 607 66.9
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 1.3e-220 770.0 612 66.3
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 3.9e-220 768.5 607 67.2
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 8.6e-220 767.3 604 67.5
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 1.5e-219 766.5 607 63.3
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 1.6e-218 763.1 616 66.6
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 1.5e-216 756.5 555 71.9
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 2.0e-216 756.1 606 65.7
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 2.6e-216 755.7 611 65.6
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 4.9e-215 751.5 610 65.9
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 1.1e-214 750.4 618 66.2
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 2.4e-214 749.2 597 66.8
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 9.2e-214 747.3 599 66.1
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 1.6e-213 746.5 600 66.0
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 2.1e-213 746.1 600 65.7
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 1.7e-212 743.0 629 63.0
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 6.6e-212 741.1 597 66.5
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 9.6e-211 737.3 597 64.2
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 8.1e-210 734.2 602 63.5
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 1.1e-209 733.8 602 63.6
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 4.9e-207 724.9 596 65.1
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 5.4e-206 721.5 607 63.8
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 1.0e-204 717.2 606 62.5
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 1.1e-203 713.8 599 64.3
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 1.1e-203 713.8 599 64.3
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 1.9e-203 713.0 570 66.7
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 3.3e-203 712.2 599 64.1
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 3.3e-203 712.2 583 63.6
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 3.3e-203 712.2 599 64.1
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 5.6e-203 711.4 613 63.1
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 9.6e-203 710.7 599 63.9
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 9.6e-203 710.7 599 63.9
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 3.6e-202 708.8 600 64.0
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 3.1e-201 705.7 593 63.9
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 2.2e-199 699.5 629 60.7
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 2.2e-199 699.5 605 62.1
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 7.9e-197 691.0 599 61.8
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 6.7e-196 688.0 578 64.2
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 6.4e-191 671.4 522 69.0
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 1.6e-189 666.8 608 60.4
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 2.1e-189 666.4 513 68.8
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 7.4e-187 657.9 524 65.6
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 1.4e-185 653.7 599 59.8
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 1.8e-185 653.3 486 71.6
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 6.5e-183 644.8 606 58.3
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 3.3e-179 632.5 442 72.9
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 8.0e-157 558.1 444 68.2
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 2.3e-156 556.6 540 58.3
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 2.5e-150 536.6 488 63.1
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 1.8e-137 493.8 424 64.4
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 1.1e-134 484.6 416 63.7
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.5e-131 474.2 644 45.2
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 2.2e-130 470.3 652 44.2
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 2.0e-128 463.8 361 69.8
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 1.8e-124 450.7 637 42.9
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 1.6e-120 437.6 402 57.5
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 2.1e-112 410.6 629 41.3
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 4.7e-109 399.4 355 58.6
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.0e-107 394.0 355 63.4
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 4.4e-107 392.9 594 39.9
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 5.8e-107 392.5 355 62.8
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 9.3e-89 332.0 354 54.2
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.6e-80 304.7 400 44.8
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 3.3e-78 297.0 366 50.5
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 4.8e-69 266.5 745 29.8
arahy.Tifrunner.gnm1.ann1.V18GKH Arachis hypogaea HOM05D005251 ORTHO05D006680 4.6e-64 250.0 158 75.9
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 3.1e-60 237.3 681 29.8
Sopen12g003810 Solanum pennellii HOM05D005251 ORTHO05D006680 4.1e-60 236.9 160 70.0
Lalb_Chr12g0199801 Lupinus albus HOM05D005251 ORTHO05D006680 5.9e-59 233.0 159 69.2
HPP92_009143 Vanilla planifolia HOM05D005251 ORTHO05D006680 8.5e-58 229.2 196 57.7
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.1e-54 218.8 683 28.1
MD15G1207700 Malus domestica HOM05D005251 ORTHO05D006680 8.2e-53 212.6 136 76.5
C09p50860 Brassica napus HOM05D005251 ORTHO05D006680 1.8e-52 211.5 179 61.5
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 9.1e-52 209.1 176 56.8
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 1.4e-49 201.8 217 49.8
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 1.9e-49 201.4 296 47.0
SGA_v2.0_scaffold21G09392 Striga asiatica HOM05D005251 ORTHO05D006680 1.3e-45 188.7 117 73.5
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 4.8e-45 186.8 256 44.9
Solyc12g008890.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 8.2e-45 186.0 117 71.8
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 1.0e-42 179.1 226 44.2
BcaNung02827 Brassica carinata HOM05D005251 ORTHO05D006680 1.1e-38 165.6 184 52.2
BcaNung03955 Brassica carinata HOM05D005251 ORTHO05D006680 1.1e-38 165.6 184 52.2
ATR0789G123 Amborella trichopoda HOM05D005251 ORTHO05D006680 2.6e-38 164.5 117 62.4
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 2.4e-36 157.9 278 40.3
vmacro17242 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 3.5e-35 154.1 96 71.9
C07p41650 Brassica napus HOM05D005251 ORTHO05D019858 4.2e-33 147.1 156 55.1
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 7.2e-33 146.4 404 28.7
BcaNung02829 Brassica carinata HOM05D005251 ORTHO05D019858 1.0e-31 142.5 120 64.2
Solyc05g032650.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.4e-28 131.3 140 48.6
C06p07120 Brassica napus HOM05D005251 ORTHO05D006680 9.1e-28 129.4 114 60.5
BolC7t44699H Brassica oleracea HOM05D005251 ORTHO05D019858 1.2e-27 129.0 140 54.3
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 5.9e-27 126.7 86 66.3
MCO16G282 Micromonas commoda HOM05D005251 ORTHO05D006680 2.3e-23 114.8 265 34.3
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 8.3e-21 106.3 81 63.0
vmacro22302 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 5.9e-19 100.1 77 61.0
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 3.6e-16 90.9 221 27.1
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 4.7e-16 90.5 223 27.4
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 4.7e-16 90.5 234 24.8
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 1.8e-15 88.6 222 26.1
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 1.5e-14 85.5 223 23.8
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 2.6e-14 84.7 237 26.6
EL10Ac2g03737 Beta vulgaris HOM05D003636 ORTHO05D005160 5.7e-14 83.6 241 24.9
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 5.7e-14 83.6 222 24.8
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 2.8e-13 81.3 244 26.2
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 3.7e-13 80.9 222 24.8
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 6.3e-13 80.1 252 24.6
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 8.3e-13 79.7 244 25.4
Cpa.g.sc58.55 Carica papaya HOM05D003636 ORTHO05D005160 1.1e-12 79.3 222 24.3
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 1.4e-12 79.0 221 24.4
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 2.4e-12 78.2 192 27.6
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 4.1e-12 77.4 244 23.8
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 5.4e-12 77.0 252 25.0
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 1.2e-11 75.9 222 23.0
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 2.0e-11 75.1 222 24.3
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 4.5e-11 73.9 239 23.4
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 5.9e-11 73.6 222 23.9
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 5.9e-11 73.6 239 25.1
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 7.8e-11 73.2 222 23.9
BolC9t57946H Brassica oleracea HOM05D005251 ORTHO05D006680 1.3e-10 72.4 58 60.3
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 1.7e-10 72.0 251 23.1
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 2.9e-10 71.2 194 26.3
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 3.9e-10 70.9 251 24.3
Actinidia25250 Actinidia chinensis HOM05D005251 ORTHO05D006680 8.6e-10 69.7 41 80.5
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 8.6e-10 69.7 234 23.1
Hund02552 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.5e-09 68.9 224 23.7
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 1.9e-09 68.6 234 22.6
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 2.5e-09 68.2 234 22.6
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 7.3e-09 66.6 247 23.5
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 7.3e-09 66.6 265 23.0
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 2.1e-08 65.1 247 22.3
C06p07130 Brassica napus HOM05D005251 ORTHO05D006680 3.6e-08 64.3 41 68.3
PRCOL_00006475 Prasinoderma coloniale HOM05D003636 ORTHO05D005160 3.1e-07 61.2 208 25.5
SalBow5G3528 Salvia bowleyana HOM05D000147 ORTHO05D005311 2.0e-06 58.5 36 66.7
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 4.4e-06 57.4 161 26.1
COL.COLO4_18153 Corchorus olitorius HOM05D005251 ORTHO05D006680 4.4e-06 57.4 53 58.5
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 7.5e-06 56.6 157 26.8


User provided reference genes

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