Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.4e-123 446.4 244 100.0
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 2.1e-116 422.5 244 96.3
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.3e-113 413.3 244 94.3
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.9e-113 411.4 245 93.9
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.6e-103 379.8 244 88.1
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.1e-99 367.1 244 86.1
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.1e-80 303.9 238 74.8
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 6.7e-78 294.7 239 73.6
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 2.7e-71 272.7 235 68.5
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 3.6e-71 272.3 239 66.1
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 2.3e-70 269.6 238 65.5
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.5e-69 266.9 239 66.1
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 4.4e-69 265.4 235 67.2
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.7e-68 263.5 235 68.5
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 4.8e-68 261.9 250 63.6
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 6.3e-68 261.5 239 63.6
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 2.4e-67 259.6 239 64.4
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.1e-67 259.2 239 64.4
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 3.1e-67 259.2 237 64.6
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 5.3e-67 258.5 234 67.1
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 1.5e-66 256.9 263 60.8
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.6e-66 256.1 236 64.4
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 3.4e-66 255.8 232 66.8
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 2.2e-65 253.1 238 64.3
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 7.2e-64 248.1 242 63.6
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 3.6e-63 245.7 225 63.6
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 6.1e-63 245.0 241 64.3
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.0e-62 244.2 231 62.8
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.0e-62 242.7 284 55.6
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 7.4e-61 238.0 240 62.5
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.3e-60 237.3 241 62.2
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-60 237.3 239 60.7
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.2e-60 236.5 227 62.6
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.7e-60 235.7 239 60.3
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 4.8e-60 235.3 232 62.5
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 2.6e-58 229.6 234 61.1
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 2.6e-58 229.6 234 61.1
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 4.5e-58 228.8 237 59.5
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 5.9e-58 228.4 238 62.6
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 7.7e-58 228.0 240 60.4
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.0e-57 227.6 213 65.3
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.3e-57 227.3 241 58.1
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.9e-57 226.1 233 60.9
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 3.8e-57 225.7 239 58.2
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 5.0e-57 225.3 233 60.5
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 6.5e-57 224.9 239 58.6
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 8.5e-57 224.6 233 61.4
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.1e-56 224.2 234 59.8
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.5e-56 223.8 241 58.5
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 4.2e-56 222.2 240 58.8
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 9.4e-56 221.1 237 59.9
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.1e-55 219.9 227 60.4
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 2.1e-55 219.9 242 58.3
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 3.6e-55 219.2 242 57.4
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 8.0e-55 218.0 240 57.5
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.0e-54 217.6 241 57.7
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.8e-54 216.9 228 57.9
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.8e-54 216.9 165 78.2
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 8.8e-54 214.5 228 59.2
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.5e-53 213.8 235 56.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 2.0e-53 213.4 254 55.5
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 4.8e-52 208.8 236 55.9
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.4e-51 207.2 269 51.7
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 3.1e-51 206.1 232 56.9
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 5.3e-51 205.3 264 51.5
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 7.0e-51 204.9 236 54.7
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.6e-50 203.8 237 54.9
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.9e-50 201.8 238 54.6
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 5.9e-50 201.8 243 55.6
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 1.0e-49 201.1 221 58.4
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.3e-49 200.7 232 58.6
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.7e-49 200.3 238 54.2
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.1e-48 197.6 240 55.0
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.5e-48 197.2 225 57.8
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.9e-48 196.8 231 55.8
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 2.5e-48 196.4 239 56.1
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 3.2e-48 196.1 223 56.5
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 3.2e-48 196.1 237 56.5
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 3.2e-48 196.1 235 55.3
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.7e-47 193.0 234 54.7
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.1e-47 191.8 196 61.2
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.1e-47 191.8 196 61.2
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 8.0e-47 191.4 231 55.0
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 8.0e-47 191.4 231 55.0
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 8.0e-47 191.4 239 51.9
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.8e-46 190.3 239 52.3
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 4.0e-46 189.1 241 53.5
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 5.2e-46 188.7 231 54.5
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 6.8e-46 188.3 338 42.9
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 8.8e-46 188.0 241 52.7
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 8.8e-46 188.0 231 55.4
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 5.7e-45 185.3 238 54.6
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 5.7e-45 185.3 231 53.7
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 5.7e-45 185.3 231 53.7
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 7.5e-45 184.9 225 55.6
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.4e-43 180.6 231 51.9
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 4.1e-43 179.1 241 52.7
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 5.4e-43 178.7 226 53.5
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 3.5e-42 176.0 237 51.5
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 5.9e-42 175.3 238 52.1
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.0e-41 174.5 240 51.2
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.3e-41 173.3 235 51.1
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.8e-41 172.6 223 53.4
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.5e-40 170.6 229 49.8
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.5e-40 169.9 257 47.1
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.5e-40 169.9 257 47.1
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 5.5e-40 168.7 200 55.0
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 7.2e-40 168.3 235 50.2
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 3.6e-39 166.0 229 50.2
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 8.0e-39 164.9 235 50.2
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.0e-38 164.5 233 50.6
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.0e-38 164.5 233 50.6
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 2.3e-38 163.3 242 50.8
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 2.3e-38 163.3 242 50.8
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 2.3e-38 163.3 242 50.8
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.3e-38 163.3 208 53.4
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 7.5e-37 158.3 234 48.3
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 9.8e-37 157.9 228 50.4
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.3e-36 157.5 165 58.8
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 5.9e-34 148.7 228 47.4
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 7.8e-34 148.3 234 48.3
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 7.8e-34 148.3 234 48.3
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 9.5e-32 141.4 124 67.7
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.0e-30 136.0 310 39.4
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.6e-29 133.3 230 45.2
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 3.4e-29 132.9 227 44.1
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 8.3e-28 128.3 159 58.5
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.1e-24 117.9 109 64.2
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 7.3e-24 115.2 167 50.9
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.3e-22 110.2 233 38.6
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 4.4e-21 105.9 144 51.4
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 3.2e-19 99.8 219 40.2
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.7e-18 96.7 233 34.3
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 2.3e-17 93.6 158 47.5
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 5.6e-16 89.0 131 51.9
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.1e-14 84.7 87 57.5
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.1e-14 84.7 264 31.4
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.1e-14 84.7 89 57.3
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 2.9e-12 76.6 87 51.7
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 3.5e-10 69.7 50 72.0
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 1.1e-08 64.7 90 50.0
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.3e-08 63.2 41 80.5
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 4.3e-08 62.8 124 43.5
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 7.3e-08 62.0 41 80.5
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.1e-07 60.5 73 56.2
Lj5A250G20 Lonicera japonica HOM05D012292 ORTHO05D012234 8.1e-07 58.5 65 46.2


User provided reference genes

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