Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4410 Fragaria x ananassa HOM05D020287 ORTHO05D003103 1.2e-103 379.8 183 100.0
FAN16G1176 Fragaria x ananassa HOM05D020287 ORTHO05D003103 3.3e-98 361.7 183 95.1
FAN09G1227 Fragaria x ananassa HOM05D020287 ORTHO05D003103 2.2e-97 359.0 183 95.1
FAN11G3394 Fragaria x ananassa HOM05D020287 ORTHO05D003103 1.6e-95 352.8 182 94.0
FAN06G3921 Fragaria x ananassa HOM05D021590 ORTHO05D208334 1.7e-41 173.3 186 58.1
FAN02G2510 Fragaria x ananassa HOM05D020287 ORTHO05D003103 3.5e-39 165.6 149 59.7
FAN25G2536 Fragaria x ananassa HOM05D001065 ORTHO05D003103 5.6e-29 131.7 141 53.9
RcHm_v2.0_Chr5g0003401 Rosa chinensis HOM05D001065 ORTHO05D003103 9.6e-29 131.0 130 55.4
FAN21G0065 Fragaria x ananassa HOM05D001065 ORTHO05D003103 1.3e-28 130.6 142 53.5
FAN21G0171 Fragaria x ananassa HOM05D001065 ORTHO05D003103 1.3e-28 130.6 142 53.5
FvH4_3g02280 Fragaria vesca HOM05D001065 ORTHO05D003103 6.2e-28 128.3 143 53.1
Prupe.4G022300 Prunus persica HOM05D001065 ORTHO05D003103 2.5e-16 89.7 149 39.6
Prupe.5G005400 Prunus persica HOM05D001065 ORTHO05D003103 1.2e-15 87.4 144 39.6
FAN11G1813 Fragaria x ananassa HOM05D021590 ORTHO05D201796 1.3e-14 84.0 109 48.6
Ciclev10001069m.g Citrus clementina HOM05D001065 ORTHO05D003103 1.8e-14 83.6 121 38.8
MD05G1344100 Malus domestica HOM05D001065 ORTHO05D003103 3.9e-14 82.4 143 37.1
Manes.18G001900 Manihot esculenta HOM05D001065 ORTHO05D003103 3.9e-14 82.4 131 40.5
Sed0018640 Sechium edule HOM05D001065 ORTHO05D003103 8.7e-14 81.3 132 36.4
Atru.chr13.59 Acer truncatum HOM05D001065 ORTHO05D003103 1.1e-13 80.9 125 39.2
SalBow6G3244 Salvia bowleyana HOM05D001065 ORTHO05D003103 2.5e-13 79.7 121 38.8
SGA_v2.0_scaffold220G42645 Striga asiatica HOM05D001065 ORTHO05D003103 2.5e-13 79.7 126 40.5
MELO3C017062.2 Cucumis melo HOM05D001065 ORTHO05D003103 3.3e-13 79.3 132 36.4
CsaV3_4G037680 Cucumis sativus L. HOM05D001065 ORTHO05D003103 3.3e-13 79.3 132 36.4
ClCG11G019090 Citrullus lanatus HOM05D001065 ORTHO05D003103 1.6e-12 77.0 132 37.1
MD00G1206800 Malus domestica HOM05D001065 ORTHO05D003103 1.6e-12 77.0 151 35.8
CSS0035387 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D003103 3.7e-12 75.9 136 36.8
unitig_578.g16240 Utricularia gibba HOM05D001065 ORTHO05D003103 6.3e-12 75.1 128 38.3
MSTRG.24517 Avicennia marina HOM05D001065 ORTHO05D003103 8.2e-12 74.7 125 36.8
GSVIVG01013428001 Vitis vinifera HOM05D001065 ORTHO05D003103 8.2e-12 74.7 128 39.1
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 1.1e-11 74.3 121 36.4
Potri.002G004800 Populus trichocarpa HOM05D001065 ORTHO05D003103 1.8e-11 73.6 136 33.8
arahy.Tifrunner.gnm1.ann1.W4A4ZK Arachis hypogaea HOM05D001065 ORTHO05D003103 2.4e-11 73.2 127 37.0
Dinv13759 Davidia involucrata HOM05D001065 ORTHO05D003103 2.4e-11 73.2 132 36.4
arahy.Tifrunner.gnm1.ann1.L2XFJE Arachis hypogaea HOM05D001065 ORTHO05D003103 3.1e-11 72.8 127 37.0
Nitab4.5_0001756g0010 Nicotiana tabacum HOM05D001065 ORTHO05D003103 3.1e-11 72.8 134 38.1
Actinidia15525 Actinidia chinensis HOM05D001065 ORTHO05D003103 4.1e-11 72.4 130 34.6
Actinidia17078 Actinidia chinensis HOM05D001065 ORTHO05D003103 4.1e-11 72.4 130 34.6
Lalb_Chr11g0061371 Lupinus albus HOM05D001065 ORTHO05D003103 4.1e-11 72.4 128 37.5
Medtr3g116120 Medicago truncatula HOM05D001065 ORTHO05D003103 4.1e-11 72.4 132 33.3
TPR.G38238 Trifolium pratense HOM05D001065 ORTHO05D003103 4.1e-11 72.4 133 33.8
Eucgr.F01821 Eucalyptus grandis HOM05D001065 ORTHO05D003103 5.3e-11 72.0 133 36.8
Sp4g15960 Schrenkiella parvula HOM05D001065 ORTHO05D003103 5.3e-11 72.0 125 39.2
BcaB06g28706 Brassica carinata HOM05D001065 ORTHO05D003103 6.9e-11 71.6 124 38.7
Dinv29376 Davidia involucrata HOM05D001065 ORTHO05D003103 6.9e-11 71.6 125 36.0
Sabra02G0003200 Salix brachista HOM05D001065 ORTHO05D003103 6.9e-11 71.6 136 33.1
TWI36G1461 Tripterygium wilfordii HOM05D001065 ORTHO05D003103 6.9e-11 71.6 133 36.1
vmacro21766 Vaccinium macrocarpon HOM05D001065 ORTHO05D003103 6.9e-11 71.6 127 37.0
Carub.0004s1524 Capsella rubella HOM05D001065 ORTHO05D003103 9.0e-11 71.2 125 37.6
CiPaw.07G133400 Carya illinoinensis HOM05D001065 ORTHO05D003103 1.2e-10 70.9 133 36.8
TAR376G1201 Trochodendron aralioides HOM05D001065 ORTHO05D003103 1.2e-10 70.9 133 35.3
VMungo1309G2971 Vigna mungo HOM05D001065 ORTHO05D003103 1.2e-10 70.9 127 37.0
Aa31LG9G13540 Aethionema arabicum HOM05D001065 ORTHO05D003103 1.5e-10 70.5 125 36.0
CARHR127630 Cardamine hirsuta HOM05D001065 ORTHO05D003103 1.5e-10 70.5 123 38.2
Phvul.009G008500 Phaseolus vulgaris HOM05D001065 ORTHO05D003103 2.0e-10 70.1 127 37.0
Glyma.06G014400 Glycine max HOM05D001065 ORTHO05D003103 2.6e-10 69.7 127 37.0
THA.LOC104806869 Tarenaya hassleriana HOM05D001065 ORTHO05D003103 2.6e-10 69.7 125 36.8
Glyma.04G014400 Glycine max HOM05D001065 ORTHO05D003103 3.4e-10 69.3 127 37.0
Lj1g0025049 Lotus japonicus HOM05D001065 ORTHO05D003103 3.4e-10 69.3 135 34.8
SGA_v2.0_scaffold227G43162 Striga asiatica HOM05D001065 ORTHO05D003103 3.4e-10 69.3 129 37.2
Nn6g31623 Nelumbo nucifera HOM05D001065 ORTHO05D003103 4.5e-10 68.9 133 34.6
Cpa.g.sc26.13 Carica papaya HOM05D001065 ORTHO05D003103 5.9e-10 68.6 120 37.5
FAN06G1841 Fragaria x ananassa HOM05D020287 ORTHO05D207694 7.7e-10 68.2 66 57.6
A04p25870 Brassica napus HOM05D000236 ORTHO05D003103 1.0e-09 67.8 121 33.9
BraA04t18089Z Brassica rapa HOM05D001065 ORTHO05D003103 1.0e-09 67.8 121 33.9
BcaC02g07806 Brassica carinata HOM05D001065 ORTHO05D003103 1.7e-09 67.0 121 33.9
C04p63140 Brassica napus HOM05D001065 ORTHO05D003103 1.7e-09 67.0 121 33.9
BolC4t27786H Brassica oleracea HOM05D001065 ORTHO05D003103 1.7e-09 67.0 121 33.9
Ca_15384_v3 Cicer arietinum L. HOM05D001065 ORTHO05D003103 1.7e-09 67.0 119 35.3
CAN.G1330.12 Capsicum annuum HOM05D001065 ORTHO05D003103 2.2e-09 66.6 133 33.1
Gohir.D05G180900 Gossypium hirsutum HOM05D001065 ORTHO05D003103 2.2e-09 66.6 128 38.3
Gorai.009G185900 Gossypium raimondii HOM05D001065 ORTHO05D003103 2.2e-09 66.6 128 38.3
AUR62035171 Chenopodium quinoa HOM05D001065 ORTHO05D003103 2.9e-09 66.2 129 33.3
Sc15g0004060 Simmondsia chinensis HOM05D001065 ORTHO05D003103 2.9e-09 66.2 135 36.3
CDE05G3146 Ceratophyllum demersum HOM05D001065 ORTHO05D003103 3.8e-09 65.9 124 33.1
AL4G29280 Arabidopsis lyrata HOM05D001065 ORTHO05D003103 5.0e-09 65.5 125 34.4
Gohir.A05G177500 Gossypium hirsutum HOM05D001065 ORTHO05D003103 5.0e-09 65.5 128 38.3
Hund01833 Selenicereus undatus HOM05D001065 ORTHO05D003103 5.0e-09 65.5 127 33.1
CDE05G0552 Ceratophyllum demersum HOM05D001065 ORTHO05D003103 6.5e-09 65.1 124 32.3
Migut.N02988 Erythranthe guttata HOM05D001065 ORTHO05D003103 6.5e-09 65.1 134 34.3
Aqoxy7G04038 Aquilegia oxysepala HOM05D001065 ORTHO05D003103 8.5e-09 64.7 127 34.6
MBI01_g28403_MAGBIO Magnolia biondii HOM05D001065 ORTHO05D003103 8.5e-09 64.7 143 32.2
Solyc04g082760.3 Solanum lycopersicum HOM05D001065 ORTHO05D003103 8.5e-09 64.7 130 33.8
Sopen04g036400 Solanum pennellii HOM05D001065 ORTHO05D003103 8.5e-09 64.7 130 33.8
PGSC0003DMG400009998 Solanum tuberosum HOM05D001065 ORTHO05D003103 8.5e-09 64.7 130 33.8
Psat2g065040 Pisum sativum HOM05D001065 ORTHO05D003103 1.4e-08 63.9 127 33.9
DCAR_023022 Daucus carota HOM05D001065 ORTHO05D003103 1.9e-08 63.5 126 34.1
AT2G33610 Arabidopsis thaliana HOM05D001065 ORTHO05D003103 2.5e-08 63.2 125 32.8
COL.COLO4_12297 Corchorus olitorius HOM05D001065 ORTHO05D003103 2.5e-08 63.2 121 36.4
Lj4A811T124 Lonicera japonica HOM05D001065 ORTHO05D003103 2.5e-08 63.2 146 30.8
QL02p015747 Quercus lobata HOM05D001065 ORTHO05D003103 2.5e-08 63.2 146 31.5
HPP92_013560 Vanilla planifolia HOM05D001065 ORTHO05D003103 2.5e-08 63.2 117 35.0
EL10Ac1g01870 Beta vulgaris HOM05D001065 ORTHO05D003103 3.2e-08 62.8 157 31.8
SHI07950 Sapria himalayana HOM05D001065 ORTHO05D003103 7.2e-08 61.6 107 40.2
PGR083G0789 Punica granatum HOM05D001065 ORTHO05D003103 9.4e-08 61.2 132 31.1
Thhalv10016607m.g Eutrema salsugineum HOM05D001065 ORTHO05D003103 1.6e-07 60.5 125 32.0
PSO541G2552 Papaver somniferum HOM05D001065 ORTHO05D003103 1.6e-07 60.5 147 30.6
PSO675G0227 Papaver somniferum HOM05D001065 ORTHO05D003103 1.6e-07 60.5 147 30.6
Duzib116G0376 Durio zibethinus HOM05D001065 ORTHO05D003103 2.7e-07 59.7 114 34.2
Medtr6g053260 Medicago truncatula HOM05D000007 ORTHO05D003103 8.8e-06 54.7 126 30.2


User provided reference genes

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