Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.9e-223 778.1 482 100.0
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.3e-221 773.1 482 98.5
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.4e-212 742.3 482 96.3
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.7e-210 736.1 482 91.9
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.5e-209 731.1 479 93.5
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.0e-191 673.7 492 85.8
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 3.0e-162 575.9 493 69.0
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 8.7e-154 547.7 492 67.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.0e-150 536.6 489 69.1
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 6.4e-141 505.0 477 63.9
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 3.9e-138 495.7 499 61.5
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 6.2e-136 488.4 494 68.4
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 4.0e-135 485.7 484 68.8
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 7.6e-134 481.5 481 63.2
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 5.5e-132 475.3 509 55.4
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 4.6e-131 472.2 493 60.4
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.9e-129 466.8 481 69.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 4.3e-129 465.7 478 68.0
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.7e-129 465.3 497 60.6
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 3.7e-128 462.6 481 61.1
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.1e-127 461.1 497 56.5
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.8e-127 460.3 487 61.2
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 4.1e-127 459.1 505 63.4
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.2e-126 457.6 482 58.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.6e-126 456.4 488 56.6
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.9e-125 453.0 501 55.9
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.9e-125 453.0 482 65.8
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 8.5e-125 451.4 489 55.6
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.9e-124 450.3 501 55.3
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 7.2e-124 448.4 481 55.5
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.6e-123 447.2 479 60.5
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.1e-123 446.8 501 55.3
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 2.7e-123 446.4 513 62.2
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 3.9e-122 442.6 505 62.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.7e-121 438.0 492 57.5
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.7e-120 436.0 487 63.2
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.8e-120 435.6 484 55.0
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.1e-119 433.0 478 56.3
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 6.9e-119 431.8 488 59.6
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.6e-118 429.9 490 60.0
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 7.7e-118 428.3 483 59.4
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.0e-117 427.9 481 56.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.7e-117 427.2 479 58.5
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.2e-117 426.8 478 55.6
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.4e-116 424.1 487 57.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.9e-116 423.7 480 56.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.9e-116 423.7 478 57.1
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 7.2e-116 421.8 486 60.7
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.2e-115 421.0 494 55.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.2e-115 421.0 483 56.7
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.2e-115 421.0 535 51.4
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.6e-115 419.5 478 58.8
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.3e-114 416.8 477 58.5
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.9e-114 416.0 516 51.7
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.6e-113 413.3 492 55.9
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 3.3e-113 412.9 481 53.8
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 4.4e-113 412.5 481 54.9
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 2.8e-112 409.8 501 56.3
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 4.8e-112 409.1 497 62.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.8e-111 407.1 478 53.1
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.1e-111 406.4 487 56.1
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 5.3e-111 405.6 486 59.5
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 7.7e-110 401.7 505 63.0
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 3.8e-109 399.4 490 52.7
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.5e-108 397.5 478 54.8
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.9e-108 397.1 502 55.4
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.2e-108 396.0 489 55.4
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 5.5e-108 395.6 478 53.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.2e-108 395.2 477 54.1
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.2e-107 394.4 499 54.9
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 3.6e-107 392.9 516 48.6
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 6.1e-107 392.1 478 59.2
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 8.0e-107 391.7 510 51.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.4e-106 391.0 491 50.3
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.8e-106 390.6 492 61.2
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.0e-105 387.1 478 57.5
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 7.4e-105 385.2 501 52.3
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.2e-104 383.6 480 52.3
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.5e-102 376.3 458 58.1
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 5.0e-101 372.5 495 52.5
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.1e-100 371.3 482 49.0
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 5.5e-100 369.0 509 46.6
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.2e-99 367.9 510 48.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.2e-99 367.9 486 52.9
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.6e-99 367.5 492 58.3
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 3.6e-99 366.3 496 48.2
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 6.1e-99 365.5 490 50.4
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 4.0e-98 362.8 490 52.0
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 5.7e-97 359.0 509 49.9
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 4.8e-96 355.9 507 46.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 8.3e-96 355.1 499 47.3
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.1e-95 354.8 511 46.6
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 4.1e-95 352.8 508 46.3
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.2e-94 351.3 487 47.8
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 7.7e-94 348.6 444 52.9
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 3.8e-93 346.3 486 57.4
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 4.2e-92 342.8 464 53.0
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 9.4e-92 341.7 500 49.0
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 9.4e-92 341.7 523 45.7
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.2e-89 334.7 474 49.2
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 5.7e-89 332.4 444 48.2
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 8.3e-88 328.6 197 84.3
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.2e-86 324.7 496 45.2
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.3e-85 321.2 483 45.8
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 2.3e-85 320.5 485 58.6
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.2e-83 314.7 478 53.6
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.2e-82 309.3 482 43.8
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.3e-80 304.7 455 53.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 7.8e-78 295.4 171 85.4
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.3e-74 283.9 524 38.5
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.3e-74 283.9 192 76.6
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 2.0e-73 280.8 167 84.4
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.3e-72 278.1 445 42.7
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.3e-72 278.1 516 42.2
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.1e-71 275.0 494 42.7
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.6e-70 271.2 415 51.1
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 6.0e-70 269.2 439 42.6
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.1e-68 265.0 471 40.8
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 7.3e-68 262.3 488 40.4
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.9e-56 223.8 422 42.2
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 8.3e-56 222.2 383 42.3
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 8.3e-56 222.2 128 82.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 7.3e-52 209.1 172 66.9
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.2e-47 193.4 210 56.7
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 3.9e-45 186.8 536 33.6
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 5.3e-42 176.4 444 34.9
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 6.6e-37 159.5 183 48.6
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 9.9e-33 145.6 191 43.5
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.7e-32 144.8 477 32.7
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 2.1e-30 137.9 147 46.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.3e-27 128.6 446 30.5
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.8e-27 126.7 97 71.1
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.5e-25 121.7 65 90.8
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.8e-24 117.1 73 80.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 3.8e-24 117.1 169 48.5
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 5.7e-20 103.2 97 58.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 2.5e-15 87.8 62 72.6
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 2.5e-15 87.8 62 72.6
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 6.1e-14 83.2 206 32.5
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 7.9e-14 82.8 114 49.1
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.1e-12 79.0 102 45.1
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 4.3e-12 77.0 121 41.3
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 2.8e-11 74.3 69 56.5
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 4.8e-11 73.6 91 47.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.4e-10 72.0 49 71.4
Sp3g23340 Schrenkiella parvula HOM05D000230 ORTHO05D000176 4.6e-06 57.0 136 26.5


User provided reference genes

Program Settings