Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.3e-50 200.7 99 100.0
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.3e-50 200.7 99 100.0
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.3e-50 200.7 99 100.0
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 7.7e-49 196.8 99 98.0
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 2.3e-40 168.7 98 84.7
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 2.2e-35 152.1 95 77.9
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 6.3e-35 150.6 98 76.5
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.8e-34 149.1 93 74.2
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.8e-34 149.1 95 75.8
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.8e-34 149.1 73 95.9
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 1.8e-34 149.1 95 75.8
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.4e-34 148.7 98 73.5
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 3.1e-34 148.3 96 76.0
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 4.1e-34 147.9 95 74.7
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 5.4e-34 147.5 98 75.5
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 1.2e-33 146.4 96 72.9
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 2.0e-33 145.6 95 75.8
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.7e-33 145.2 101 76.2
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 2.7e-33 145.2 95 77.9
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 5.9e-33 144.1 93 76.3
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 7.8e-33 143.7 100 77.0
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.3e-32 142.9 93 74.2
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.7e-32 142.5 96 72.9
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 2.3e-32 142.1 93 75.3
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 2.3e-32 142.1 93 75.3
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 2.9e-32 141.7 95 72.6
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 2.9e-32 141.7 89 77.5
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 5.0e-32 141.0 98 70.4
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 5.0e-32 141.0 98 70.4
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 6.6e-32 140.6 98 70.4
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 6.6e-32 140.6 98 70.4
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 8.6e-32 140.2 95 72.6
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 1.1e-31 139.8 88 76.1
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 1.5e-31 139.4 95 72.6
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.5e-31 139.4 88 78.4
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 2.5e-31 138.7 95 71.6
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 2.5e-31 138.7 89 75.3
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 3.3e-31 138.3 96 69.8
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 4.3e-31 137.9 95 71.6
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 4.3e-31 137.9 89 75.3
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 5.6e-31 137.5 94 72.3
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 5.6e-31 137.5 70 100.0
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.6e-30 136.0 95 71.6
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 2.1e-30 135.6 96 67.7
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 3.6e-30 134.8 98 69.4
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 1.4e-29 132.9 98 69.4
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.4e-29 132.9 93 74.2
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 1.4e-29 132.9 99 70.7
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 3.0e-29 131.7 89 74.2
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 6.8e-29 130.6 95 68.4
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 6.8e-29 130.6 95 68.4
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 6.8e-29 130.6 95 68.4
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 8.9e-29 130.2 95 69.5
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 1.2e-28 129.8 95 69.5
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.2e-28 129.8 95 68.4
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 1.2e-28 129.8 98 66.3
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.2e-28 129.8 89 71.9
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 2.0e-28 129.0 93 68.8
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 2.6e-28 128.6 89 71.9
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.6e-28 128.6 90 68.9
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 2.6e-28 128.6 98 67.3
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 4.4e-28 127.9 95 67.4
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 4.4e-28 127.9 95 67.4
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 4.4e-28 127.9 95 67.4
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 4.4e-28 127.9 95 67.4
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 4.4e-28 127.9 95 67.4
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 4.4e-28 127.9 134 51.5
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 7.5e-28 127.1 99 68.7
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 9.8e-28 126.7 98 65.3
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 2.2e-27 125.6 145 49.0
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 4.9e-27 124.4 98 64.3
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 1.4e-26 122.9 98 64.3
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.4e-26 122.9 98 64.3
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 2.4e-26 122.1 93 67.7
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 2.4e-26 122.1 89 68.5
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 3.2e-26 121.7 98 63.3
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 3.2e-26 121.7 93 63.4
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 9.2e-26 120.2 100 64.0
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 9.2e-26 120.2 99 62.6
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 3.5e-25 118.2 91 64.8
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 2.3e-24 115.5 98 65.3
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 3.9e-24 114.8 85 65.9
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 5.0e-24 114.4 96 59.4
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 6.6e-24 114.0 81 71.6
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 2.5e-23 112.1 85 64.7
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 9.5e-23 110.2 71 74.6
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 1.2e-22 109.8 100 63.0
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.6e-22 109.4 71 73.2
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 1.8e-21 105.9 166 42.8
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 4.0e-21 104.8 97 59.8
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 5.2e-21 104.4 71 77.5
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 2.2e-19 99.0 96 58.3
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 6.4e-19 97.4 94 58.5
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.1e-18 96.7 54 75.9
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.7e-17 92.0 70 64.3
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 1.7e-16 89.4 49 77.6
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 3.0e-16 88.6 64 68.8
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 3.9e-16 88.2 49 77.6
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.9e-15 85.9 54 72.2
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 1.9e-15 85.9 49 77.6
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 3.3e-15 85.1 66 71.2
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 4.7e-14 81.3 70 64.3
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 3.9e-08 61.6 48 66.7
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 1.6e-06 56.2 40 75.0
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 2.8e-06 55.5 33 69.7


User provided reference genes

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