Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4148 Fragaria x ananassa HOM05D001216 ORTHO05D011815 5.5e-164 580.9 285 100.0
FAN26G0893 Fragaria x ananassa HOM05D001216 ORTHO05D011815 6.8e-106 387.9 285 71.6
FAN04G1577 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.5e-105 386.7 285 71.2
FAN10G1306 Fragaria x ananassa HOM05D001216 ORTHO05D011815 2.0e-102 376.3 285 70.5
FAN27G2928 Fragaria x ananassa HOM05D001216 ORTHO05D011815 3.3e-100 369.0 285 69.8
FAN22G2164 Fragaria x ananassa HOM05D001216 ORTHO05D011815 3.6e-99 365.5 285 68.8
FAN10G2709 Fragaria x ananassa HOM05D001216 ORTHO05D011815 4.4e-97 358.6 284 68.3
FvH4_3g31250 Fragaria vesca HOM05D001216 ORTHO05D011815 2.9e-96 355.9 281 68.0
FAN17G1526 Fragaria x ananassa HOM05D001216 ORTHO05D011815 5.0e-93 345.1 284 64.4
FAN01G1976 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.6e-91 340.1 266 68.0
FAN04G0702 Fragaria x ananassa HOM05D001216 ORTHO05D011815 3.5e-78 295.8 299 56.2
FAN05G0592 Fragaria x ananassa HOM05D001216 ORTHO05D011815 5.3e-74 282.0 229 65.5
FAN22G0603 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.5e-73 280.4 229 65.1
FAN17G0829 Fragaria x ananassa HOM05D001216 ORTHO05D011815 9.3e-71 271.2 159 83.6
FAN03G2628 Fragaria x ananassa HOM05D001216 ORTHO05D011815 6.0e-70 268.5 255 60.4
FAN05G0311 Fragaria x ananassa HOM05D001216 ORTHO05D011815 9.6e-68 261.2 255 58.4
FAN17G2871 Fragaria x ananassa HOM05D007529 ORTHO05D011815 4.5e-65 252.3 216 63.0
FAN26G2243 Fragaria x ananassa HOM05D000985 ORTHO05D000866 1.6e-62 243.8 183 74.3
FAN21G0567 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.4e-58 230.7 159 72.3
FAN21G1093 Fragaria x ananassa HOM05D001216 ORTHO05D011815 4.2e-55 219.2 174 64.9
FAN21G3946 Fragaria x ananassa HOM05D001216 ORTHO05D011815 5.9e-41 172.2 145 64.1
FAN01G2876 Fragaria x ananassa HOM05D000985 ORTHO05D011815 1.7e-40 170.6 412 35.4
FAN15G2312 Fragaria x ananassa HOM05D001216 ORTHO05D005688 3.0e-37 159.8 160 60.6
FAN15G3600 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.4e-34 151.0 117 64.1
FAN26G0156 Fragaria x ananassa HOM05D001216 ORTHO05D011815 3.1e-34 149.8 115 65.2
Manes.01G222100 Manihot esculenta HOM05D001216 ORTHO05D005688 3.1e-34 149.8 134 62.7
FvH4_2g26030 Fragaria vesca HOM05D001216 ORTHO05D005688 9.1e-34 148.3 160 56.2
FAN27G1041 Fragaria x ananassa HOM05D001216 ORTHO05D005688 9.1e-34 148.3 160 56.2
FAN24G0487 Fragaria x ananassa HOM05D001216 ORTHO05D005688 2.6e-33 146.7 164 54.9
RcHm_v2.0_Chr6g0294391 Rosa chinensis HOM05D001216 ORTHO05D005688 5.9e-33 145.6 160 55.6
Prupe.8G264600 Prunus persica HOM05D001216 ORTHO05D005688 3.8e-32 142.9 160 55.0
FAN15G2671 Fragaria x ananassa HOM05D000985 ORTHO05D011815 8.5e-32 141.7 114 67.5
MD11G1306700 Malus domestica HOM05D001216 ORTHO05D005688 8.5e-32 141.7 160 54.4
MD03G1291500 Malus domestica HOM05D001216 ORTHO05D005688 7.2e-31 138.7 160 53.8
Cpa.g.sc151.24 Carica papaya HOM05D001216 ORTHO05D005688 1.6e-30 137.5 160 52.5
FAN03G1594 Fragaria x ananassa HOM05D000985 ORTHO05D011815 2.1e-30 137.1 133 60.2
Cfa005876 Carpinus fangiana HOM05D001216 ORTHO05D005688 1.4e-29 134.4 160 51.9
Glyma.03G216400 Glycine max HOM05D001216 ORTHO05D005688 3.0e-29 133.3 160 51.9
Glyma.19G212900 Glycine max HOM05D001216 ORTHO05D005688 3.0e-29 133.3 160 51.9
VMungo1383G0601 Vigna mungo HOM05D001216 ORTHO05D005688 3.0e-29 133.3 160 51.9
Phvul.001G209900 Phaseolus vulgaris HOM05D001216 ORTHO05D005688 3.9e-29 132.9 160 51.9
TWI14G0472 Tripterygium wilfordii HOM05D001216 ORTHO05D005688 3.9e-29 132.9 160 50.6
Ca_09190_v3 Cicer arietinum L. HOM05D001216 ORTHO05D005688 5.1e-29 132.5 160 51.2
Ciclev10018801m.g Citrus clementina HOM05D001216 ORTHO05D005688 5.1e-29 132.5 160 51.9
Potri.014G126700 Populus trichocarpa HOM05D001216 ORTHO05D005688 5.1e-29 132.5 160 51.2
Haze_04975 Corylus avellana HOM05D001216 ORTHO05D005688 6.7e-29 132.1 160 51.2
MELO3C017941.2 Cucumis melo HOM05D001216 ORTHO05D005688 6.7e-29 132.1 160 50.6
Hma1.2p1_0494F.1_g165430 Hydrangea macrophylla HOM05D001216 ORTHO05D005688 6.7e-29 132.1 160 51.2
Nn3g21560 Nelumbo nucifera HOM05D001216 ORTHO05D005688 8.8e-29 131.7 160 51.2
Medtr7g108940 Medicago truncatula HOM05D001216 ORTHO05D005688 1.1e-28 131.3 160 51.2
Sed0014889 Sechium edule HOM05D001216 ORTHO05D005688 1.1e-28 131.3 160 50.6
CsaV3_4G000980 Cucumis sativus L. HOM05D001216 ORTHO05D005688 1.5e-28 131.0 160 50.6
Lalb_Chr18g0046881 Lupinus albus HOM05D001216 ORTHO05D005688 1.5e-28 131.0 160 50.6
Sabra14G0094400 Salix brachista HOM05D001216 ORTHO05D005688 1.5e-28 131.0 160 50.6
CiPaw.07G111800 Carya illinoinensis HOM05D001216 ORTHO05D005688 2.0e-28 130.6 160 51.2
Dinv19670 Davidia involucrata HOM05D001216 ORTHO05D005688 2.0e-28 130.6 160 50.6
Atru.chr5.1093 Acer truncatum HOM05D001216 ORTHO05D005688 3.3e-28 129.8 160 50.6
ECA248G1090 Erigeron canadensis HOM05D001216 ORTHO05D005688 3.3e-28 129.8 160 50.0
HanXRQChr01g0000981 Helianthus annuus HOM05D001216 ORTHO05D005688 3.3e-28 129.8 160 50.0
PGR119G1482 Punica granatum HOM05D001216 ORTHO05D005688 3.3e-28 129.8 160 50.0
DCAR_018318 Daucus carota HOM05D001216 ORTHO05D005688 4.4e-28 129.4 160 49.4
TPR.G9647 Trifolium pratense HOM05D001216 ORTHO05D005688 4.4e-28 129.4 160 50.6
Aa31LG5G1920 Aethionema arabicum HOM05D001216 ORTHO05D005688 5.7e-28 129.0 160 48.8
Duzib211G0167 Durio zibethinus HOM05D001216 ORTHO05D005688 5.7e-28 129.0 160 51.2
MBI19_g30015_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D005688 5.7e-28 129.0 160 50.0
Sp6g02150 Schrenkiella parvula HOM05D001216 ORTHO05D005688 5.7e-28 129.0 160 48.8
Actinidia25817 Actinidia chinensis HOM05D001216 ORTHO05D005688 7.4e-28 128.6 160 50.0
arahy.Tifrunner.gnm1.ann1.2L0PS7 Arachis hypogaea HOM05D001216 ORTHO05D005688 7.4e-28 128.6 160 50.0
BcaB05g23611 Brassica carinata HOM05D001216 ORTHO05D005688 7.4e-28 128.6 160 48.8
Lj1g0005208 Lotus japonicus HOM05D001216 ORTHO05D005688 7.4e-28 128.6 160 50.0
AL6G50870 Arabidopsis lyrata HOM05D001216 ORTHO05D005688 9.7e-28 128.3 160 48.8
AT4G02260 Arabidopsis thaliana HOM05D001216 ORTHO05D005688 9.7e-28 128.3 160 48.8
Cc01_g21070 Coffea canephora HOM05D001216 ORTHO05D005688 9.7e-28 128.3 160 50.6
Thhalv10028413m.g Eutrema salsugineum HOM05D001216 ORTHO05D005688 9.7e-28 128.3 160 48.8
MSTRG.17397 Avicennia marina HOM05D001216 ORTHO05D005688 1.3e-27 127.9 160 50.6
Lalb_Chr15g0078431 Lupinus albus HOM05D001216 ORTHO05D005688 1.3e-27 127.9 160 49.4
BcaC03g16112 Brassica carinata HOM05D001216 ORTHO05D005688 1.7e-27 127.5 160 48.1
A02p24590 Brassica napus HOM05D001216 ORTHO05D005688 1.7e-27 127.5 160 48.1
C02p38830 Brassica napus HOM05D001216 ORTHO05D005688 1.7e-27 127.5 160 48.1
CDE09G0061 Ceratophyllum demersum HOM05D001216 ORTHO05D005688 1.7e-27 127.5 178 47.2
Thecc.01G304700 Theobroma cacao HOM05D001216 ORTHO05D005688 1.7e-27 127.5 160 50.6
Carub.0006s3491 Capsella rubella HOM05D001216 ORTHO05D005688 2.2e-27 127.1 160 48.1
Eucgr.H01087 Eucalyptus grandis HOM05D001216 ORTHO05D005688 2.2e-27 127.1 160 50.0
Lsat_1_v5_gn_9_5980 Lactuca sativa HOM05D001216 ORTHO05D005688 2.2e-27 127.1 160 50.0
Oeu011466.1 Olea europaea HOM05D001216 ORTHO05D005688 2.2e-27 127.1 160 50.0
COL.COLO4_23312 Corchorus olitorius HOM05D001216 ORTHO05D005688 2.8e-27 126.7 160 50.6
Nn4g25744 Nelumbo nucifera HOM05D001216 ORTHO05D005688 2.8e-27 126.7 160 50.0
Psat3g020360 Pisum sativum HOM05D001216 ORTHO05D005688 2.8e-27 126.7 160 50.6
QL12p027872 Quercus lobata HOM05D001216 ORTHO05D005688 3.7e-27 126.3 160 51.2
Sc05g0003610 Simmondsia chinensis HOM05D001216 ORTHO05D005688 3.7e-27 126.3 160 48.1
BcaB01g02061 Brassica carinata HOM05D001216 ORTHO05D005688 4.8e-27 125.9 160 48.1
Gohir.D08G051800 Gossypium hirsutum HOM05D001216 ORTHO05D005688 4.8e-27 125.9 160 49.4
Gorai.004G051900 Gossypium raimondii HOM05D001216 ORTHO05D005688 4.8e-27 125.9 160 49.4
Solyc09g098580.3 Solanum lycopersicum HOM05D001216 ORTHO05D005688 4.8e-27 125.9 271 38.0
Actinidia21029 Actinidia chinensis HOM05D001216 ORTHO05D005688 6.3e-27 125.6 160 49.4
BcaC04g24051 Brassica carinata HOM05D001216 ORTHO05D005688 8.2e-27 125.2 160 48.1
C09p01790 Brassica napus HOM05D001216 ORTHO05D005688 8.2e-27 125.2 160 48.1
BolC9t53114H Brassica oleracea HOM05D001216 ORTHO05D005688 8.2e-27 125.2 160 48.1
A09p01720 Brassica napus HOM05D001216 ORTHO05D005688 1.1e-26 124.8 160 47.5
BraA09t35827Z Brassica rapa HOM05D001216 ORTHO05D005688 1.1e-26 124.8 160 47.5
Dinv33073 Davidia involucrata HOM05D001216 ORTHO05D005688 1.1e-26 124.8 160 49.4
Sopen09g036490 Solanum pennellii HOM05D001216 ORTHO05D005688 1.1e-26 124.8 271 37.6
SalBow2G0728 Salvia bowleyana HOM05D001216 ORTHO05D005688 1.4e-26 124.4 160 50.0
SalBow7G2795 Salvia bowleyana HOM05D001216 ORTHO05D005688 1.4e-26 124.4 160 50.0
BraA02t07450Z Brassica rapa HOM05D001216 ORTHO05D005688 1.8e-26 124.0 160 47.5
AUR62008703 Chenopodium quinoa HOM05D001216 ORTHO05D005688 1.8e-26 124.0 160 48.1
THA.LOC104801287 Tarenaya hassleriana HOM05D001216 ORTHO05D005688 1.8e-26 124.0 160 48.8
GSVIVG01028045001 Vitis vinifera HOM05D001216 ORTHO05D005688 1.8e-26 124.0 160 48.8
AUR62025529 Chenopodium quinoa HOM05D001216 ORTHO05D005688 2.4e-26 123.6 160 48.1
Gohir.A08G041800 Gossypium hirsutum HOM05D001216 ORTHO05D005688 2.4e-26 123.6 160 48.8
MBI01_g10023_MAGBIO Magnolia biondii HOM05D000758 ORTHO05D014849 2.4e-26 123.6 163 47.9
ECA247G3137 Erigeron canadensis HOM05D001216 ORTHO05D005688 4.1e-26 122.9 160 47.5
Gohir.A12G128700 Gossypium hirsutum HOM05D001216 ORTHO05D005688 4.1e-26 122.9 160 48.8
PSO832G4554 Papaver somniferum HOM05D001216 ORTHO05D005688 4.1e-26 122.9 160 48.1
Duzib138G0177 Durio zibethinus HOM05D001216 ORTHO05D005688 5.3e-26 122.5 160 48.8
Rhsim01G0287300 Rhododendron simsii HOM05D001216 ORTHO05D005688 5.3e-26 122.5 166 47.0
CAN.G862.66 Capsicum annuum HOM05D001216 ORTHO05D005688 7.0e-26 122.1 160 50.0
Solyc09g075390.4 Solanum lycopersicum HOM05D001216 ORTHO05D005688 7.0e-26 122.1 160 50.0
Sopen09g030160 Solanum pennellii HOM05D001216 ORTHO05D005688 7.0e-26 122.1 160 50.0
PGSC0003DMG400031817 Solanum tuberosum HOM05D001216 ORTHO05D005688 7.0e-26 122.1 160 50.0
vmacro15139 Vaccinium macrocarpon HOM05D001216 ORTHO05D005688 7.0e-26 122.1 160 49.4
Ah.15g092990 Amaranthus hybridus HOM05D001216 ORTHO05D005688 9.1e-26 121.7 160 48.1
ATR0693G436 Amborella trichopoda HOM05D001216 ORTHO05D005688 9.1e-26 121.7 160 48.8
Gohir.D12G132300 Gossypium hirsutum HOM05D001216 ORTHO05D005688 9.1e-26 121.7 160 50.0
Gorai.008G143400 Gossypium raimondii HOM05D001216 ORTHO05D005688 9.1e-26 121.7 160 50.0
Nitab4.5_0000116g0350 Nicotiana tabacum HOM05D001216 ORTHO05D005688 9.1e-26 121.7 160 49.4
Aqoxy5G00793 Aquilegia oxysepala HOM05D001216 ORTHO05D005688 1.2e-25 121.3 160 48.1
Peaxi162Scf00001g03514 Petunia axillaris HOM05D001216 ORTHO05D005688 1.2e-25 121.3 160 49.4
CSS0041875 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D005688 1.5e-25 120.9 160 48.8
Migut.D00133 Erythranthe guttata HOM05D001216 ORTHO05D005688 2.0e-25 120.6 162 50.6
CSS0031124 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D005688 2.6e-25 120.2 160 49.4
PSO210G0295 Papaver somniferum HOM05D001216 ORTHO05D005688 2.6e-25 120.2 160 47.5
HanXRQChr15g0465121 Helianthus annuus HOM05D001216 ORTHO05D005688 3.5e-25 119.8 160 47.5
Zm00001eb016330 Zea mays HOM05D001216 ORTHO05D005688 3.5e-25 119.8 160 47.5
EL10Ac7g17565 Beta vulgaris HOM05D001216 ORTHO05D005688 4.5e-25 119.4 160 46.9
Os03g0340900 Oryza sativa ssp. japonica HOM05D001216 ORTHO05D005688 7.7e-25 118.6 160 46.9
ClCG10G011110 Citrullus lanatus HOM05D001216 ORTHO05D005688 3.8e-24 116.3 114 56.1
Nitab4.5_0005673g0020 Nicotiana tabacum HOM05D001216 ORTHO05D005688 1.2e-22 111.3 160 46.9
TAR362G1019 Trochodendron aralioides HOM05D001216 ORTHO05D005688 1.0e-21 108.2 114 54.4
HPP92_001318 Vanilla planifolia HOM05D001216 ORTHO05D005688 6.7e-21 105.5 160 43.8
Pp3c16_7020 Physcomitrium patens HOM05D001216 ORTHO05D005688 1.1e-20 104.8 161 41.0
Mapoly0053s0023 Marchantia polymorpha HOM05D001216 ORTHO05D005688 1.5e-20 104.4 160 42.5
AagrBONN_evm.TU.Sc2ySwM_117.2305 Anthoceros agrestis HOM05D001216 ORTHO05D005688 4.4e-20 102.8 160 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2331 Anthoceros agrestis HOM05D001216 ORTHO05D005688 4.4e-20 102.8 160 40.6
MBI02_g24794_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D011815 7.4e-20 102.1 116 53.4
SMO119G0141 Selaginella moellendorffii HOM05D001216 ORTHO05D005688 9.7e-20 101.7 160 41.2
Pp3c6_15190 Physcomitrium patens HOM05D001216 ORTHO05D005688 3.7e-19 99.8 163 41.1
Lj1C22T13 Lonicera japonica HOM05D001216 ORTHO05D005688 2.9e-16 90.1 134 43.3
SGA_v2.0_scaffold198G41133 Striga asiatica HOM05D001216 ORTHO05D005688 2.3e-13 80.5 160 38.1
SEGI_13969 Sequoiadendron giganteum HOM05D001216 ORTHO05D011815 3.4e-12 76.6 142 39.4
FAN10G1378 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.4e-12 76.3 78 56.4
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 7.5e-12 75.5 159 35.8
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.3e-11 72.4 39 79.5
CBR_g12157 Chara braunii HOM05D001216 ORTHO05D011815 8.3e-11 72.0 113 40.7
FAN23G3088 Fragaria x ananassa HOM05D000849 ORTHO05D001720 8.3e-11 72.0 35 97.1
CDE02G3697 Ceratophyllum demersum HOM05D001216 ORTHO05D005688 2.4e-10 70.5 88 51.1
MCO04G258 Micromonas commoda HOM05D001216 ORTHO05D005688 2.4e-10 70.5 161 33.5
Nitab4.5_0001859g0010 Nicotiana tabacum HOM05D001216 ORTHO05D005688 2.4e-10 70.5 160 35.6
FAN17G0844 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.6e-09 67.8 50 72.0
FAN27G3050 Fragaria x ananassa HOM05D013620 ORTHO05D201073 2.7e-09 67.0 39 84.6


User provided reference genes

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