Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.0e-227 792.0 370 100.0
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 4.5e-227 790.8 370 99.7
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.6e-222 775.0 370 97.6
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 1.4e-207 726.1 369 91.9
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 7.5e-206 720.3 341 97.7
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 8.9e-199 696.8 374 86.6
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 3.4e-198 694.9 375 86.1
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 5.4e-196 687.6 375 85.3
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.9e-188 662.5 376 79.0
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 4.6e-187 657.9 374 80.5
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 5.1e-186 654.4 375 80.0
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 8.6e-186 653.7 373 81.0
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 7.3e-185 650.6 374 78.9
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 9.5e-185 650.2 375 79.7
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 9.5e-185 650.2 371 79.8
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.2e-184 649.8 371 80.3
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.6e-184 649.4 371 80.1
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 3.6e-184 648.3 373 79.9
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 8.1e-184 647.1 372 79.8
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.1e-183 646.7 367 80.7
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 3.1e-183 645.2 375 78.9
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 8.9e-183 643.7 374 78.9
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.5e-182 642.9 367 80.1
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 4.4e-182 641.3 382 78.5
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 5.8e-182 641.0 373 76.9
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 9.9e-182 640.2 374 79.1
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.2e-181 639.0 369 79.7
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 2.9e-181 638.6 374 78.6
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 2.9e-181 638.6 373 79.9
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 2.9e-181 638.6 373 78.8
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 8.3e-181 637.1 369 78.9
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 8.3e-181 637.1 374 77.8
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.4e-180 636.3 371 77.9
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.4e-180 636.3 373 77.7
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.9e-180 636.0 374 78.6
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.4e-180 635.6 371 77.9
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 2.4e-180 635.6 372 76.6
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 4.1e-180 634.8 365 80.0
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 5.4e-180 634.4 374 78.6
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 7.1e-180 634.0 367 79.6
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 9.2e-180 633.6 374 78.3
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 9.2e-180 633.6 374 78.1
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.2e-179 633.3 378 77.5
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.6e-179 632.9 373 77.2
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.1e-179 632.5 374 77.8
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.7e-179 632.1 381 76.9
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 3.5e-179 631.7 369 78.9
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 6.0e-179 630.9 375 77.1
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 6.0e-179 630.9 368 78.8
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 3.0e-178 628.6 375 76.8
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 8.6e-178 627.1 375 76.8
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.1e-177 626.7 371 78.2
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.9e-177 625.9 374 76.2
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 5.6e-177 624.4 371 77.9
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 9.6e-177 623.6 372 76.9
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.6e-176 622.9 371 76.8
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.8e-176 622.1 373 77.2
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 3.6e-176 621.7 373 76.9
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 6.2e-176 620.9 371 76.0
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 8.1e-176 620.5 370 77.0
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 8.1e-176 620.5 375 74.7
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.1e-175 620.2 373 76.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.8e-175 619.4 370 76.5
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 8.9e-175 617.1 374 76.7
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 8.9e-175 617.1 374 75.9
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 8.9e-175 617.1 389 75.1
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.0e-174 615.9 369 77.5
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.0e-174 615.9 374 76.5
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 3.4e-174 615.1 370 75.1
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 3.4e-174 615.1 370 76.2
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 4.4e-174 614.8 369 74.8
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 4.4e-174 614.8 371 75.7
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 4.4e-174 614.8 373 75.9
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 5.8e-174 614.4 374 74.3
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 5.8e-174 614.4 371 75.5
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 7.6e-174 614.0 367 75.5
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 3.8e-173 611.7 374 74.6
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.4e-172 609.8 370 75.1
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.4e-172 609.8 371 73.9
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 1.9e-172 609.4 374 73.8
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-172 609.0 370 74.9
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.4e-172 609.0 373 73.5
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.4e-172 609.0 370 75.1
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 2.4e-172 609.0 373 73.5
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 2.4e-172 609.0 366 77.0
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 7.1e-172 607.4 373 73.7
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 7.1e-172 607.4 370 73.8
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 9.2e-172 607.1 370 75.1
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 1.2e-171 606.7 373 73.7
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.1e-170 601.3 373 74.5
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 5.1e-170 601.3 373 72.1
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 3.3e-169 598.6 373 72.4
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 7.3e-169 597.4 384 72.1
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 9.6e-169 597.0 402 68.7
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 9.6e-169 597.0 357 76.8
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.5e-166 589.7 376 72.6
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 6.4e-165 584.3 422 68.0
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 4.2e-164 581.6 453 64.0
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.2e-163 580.1 378 72.8
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 3.5e-163 578.6 365 74.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 6.0e-163 577.8 368 71.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 5.1e-162 574.7 369 71.8
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.6e-160 569.7 369 73.4
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 4.0e-159 565.1 408 67.6
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 3.4e-158 562.0 407 66.1
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 7.6e-158 560.8 372 68.8
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 9.3e-156 553.9 374 69.0
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.3e-154 550.1 363 68.9
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 2.3e-154 549.3 375 66.4
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 3.9e-154 548.5 373 69.2
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 5.1e-154 548.1 346 72.0
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 4.3e-153 545.0 372 65.6
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.4e-151 540.0 368 66.0
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 1.2e-150 537.0 303 81.2
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.7e-149 533.1 359 68.0
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 3.2e-148 528.9 374 64.4
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.2e-139 500.4 415 59.3
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.5e-139 498.8 293 76.5
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.6e-136 490.0 370 65.4
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 2.4e-135 486.1 384 61.5
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 5.0e-125 451.8 262 80.2
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 5.2e-114 415.2 385 54.8
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.3e-109 400.6 343 59.2
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 3.0e-98 362.8 217 77.4
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.6e-94 350.5 379 47.5
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.5e-94 349.0 229 69.9
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.9e-94 348.6 236 69.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.2e-92 342.4 378 46.6
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 7.2e-92 341.7 235 67.7
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 7.3e-84 315.1 373 46.6
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 8.0e-83 311.6 402 43.5
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 7.5e-81 305.1 165 79.4
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.3e-80 301.6 183 73.2
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 5.2e-74 282.3 170 74.7
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 9.2e-63 245.0 171 69.6
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.9e-48 196.1 474 29.3
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.9e-48 196.1 128 82.0
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 6.6e-45 185.7 94 86.2
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 4.3e-36 156.4 104 66.3
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 7.4e-36 155.6 98 70.4
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 1.1e-31 141.7 79 84.8
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.8e-26 124.4 334 28.7
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 5.0e-24 116.3 93 63.4
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 2.7e-22 110.5 162 40.7
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 9.7e-20 102.1 156 41.0
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 1.0e-16 92.0 91 48.4
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 2.9e-16 90.5 43 93.0
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 5.5e-15 86.3 46 82.6
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 2.7e-14 84.0 41 95.1
RcHm_v2.0_Chr4g0407271 Rosa chinensis HOM05D004692 ORTHO05D342244 5.5e-07 59.7 65 46.2
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 1.2e-06 58.5 30 66.7
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 1.6e-06 58.2 36 66.7
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 1.6e-06 58.2 36 66.7
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 2.1e-06 57.8 29 69.0


User provided reference genes

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