Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1721.4 958 100.0
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1702.2 958 99.1
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1678.3 958 97.6
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1629.4 929 97.4
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1542.7 969 89.8
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1216.8 976 71.0
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1213.7 977 73.4
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1174.5 974 70.1
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1160.6 971 65.6
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1152.5 960 65.5
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1149.4 907 72.7
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1136.3 1049 60.7
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1128.2 958 68.7
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1124.4 965 63.8
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1118.2 976 67.1
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1115.9 969 62.3
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1107.8 972 63.2
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1105.1 970 62.0
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1100.5 975 61.7
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1097.8 973 62.2
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1094.7 955 67.9
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1092.4 967 66.4
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1092.0 970 59.6
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1089.7 973 62.0
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1086.6 978 61.2
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1086.6 954 66.5
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1086.2 971 60.2
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1085.5 965 63.7
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1080.9 974 65.8
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 6.6e-312 1074.7 953 65.7
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 1.3e-311 1073.2 974 66.0
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 2.6e-311 1072.0 971 65.0
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 2.1e-308 1062.4 938 67.4
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 3.6e-308 1061.6 969 65.6
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 6.1e-308 1060.8 979 60.1
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 2.3e-307 1058.9 978 57.2
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 1.9e-306 1055.8 958 66.2
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 5.7e-306 1054.3 976 63.9
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 1.3e-305 1053.1 973 59.7
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 4.1e-304 1048.1 972 61.5
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 2.0e-303 1045.8 955 60.4
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 2.6e-303 1045.4 897 62.3
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 5.9e-303 1044.3 977 60.3
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 6.5e-302 1040.8 974 61.4
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 1.4e-301 1039.6 975 63.6
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 1.9e-301 1039.3 969 60.4
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 5.5e-301 1037.7 963 64.0
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 7.2e-301 1037.3 955 63.7
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 7.2e-301 1037.3 973 59.2
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 2.7e-300 1035.4 954 60.4
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.0e-299 1033.5 953 64.5
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.8e-299 1032.7 948 60.1
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.9e-299 1031.6 962 59.7
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 2.6e-298 1028.9 976 58.4
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 7.4e-298 1027.3 888 62.0
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 1.7e-297 1026.2 971 64.9
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 4.8e-297 1024.6 971 63.9
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 2.4e-296 1022.3 948 59.5
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.1e-293 1013.4 941 63.8
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 1.1e-293 1013.4 957 59.2
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 2.3e-291 1005.7 967 57.2
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 1.3e-289 1000.0 984 62.1
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.3e-289 1000.0 982 57.0
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 1.1e-288 996.9 1006 55.6
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 5.3e-288 994.6 1014 56.4
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.6e-287 993.0 1003 55.9
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.6e-287 992.3 1010 55.7
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 1.1e-285 986.9 983 56.9
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 1.9e-285 986.1 1003 56.3
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 5.5e-285 984.6 965 62.1
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 1.2e-284 983.4 974 61.1
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 1.6e-284 983.0 850 60.7
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 2.3e-283 979.2 940 57.6
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 2.0e-282 976.1 981 58.0
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 4.4e-282 974.9 964 61.8
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 1.9e-277 959.5 940 57.6
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 6.8e-267 924.5 969 54.4
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 2.4e-264 916.0 962 56.3
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 1.6e-260 903.3 818 61.0
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 2.1e-260 902.9 976 53.4
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 2.1e-260 902.9 960 54.0
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.8e-259 899.8 978 57.1
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 5.8e-258 894.8 974 57.7
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 9.8e-258 894.0 968 56.5
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.1e-256 890.6 964 57.8
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.0e-255 886.3 973 57.7
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.0e-255 886.3 973 57.7
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 2.7e-255 885.9 957 58.4
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 7.8e-255 884.4 971 53.0
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 1.2e-252 877.1 978 56.4
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 2.6e-250 869.4 958 57.2
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 1.7e-249 866.7 973 50.5
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 3.7e-249 865.5 976 56.4
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 8.3e-249 864.4 954 57.0
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 1.9e-248 863.2 976 56.2
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 3.2e-248 862.4 955 57.4
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 6.0e-247 858.2 954 57.5
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 2.8e-244 849.4 976 54.8
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 4.4e-242 842.0 996 50.3
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 2.3e-214 750.0 872 50.1
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 1.2e-210 737.6 776 53.1
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 2.4e-208 729.9 959 46.9
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 3.0e-174 616.7 890 44.4
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 1.5e-168 597.8 968 46.7
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 2.4e-163 580.5 603 57.2
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 2.8e-151 540.4 838 45.6
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.7e-129 468.0 510 54.3
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 8.6e-129 465.7 634 43.4
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.2e-119 435.3 462 52.4
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 2.6e-117 427.6 830 35.2
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 5.8e-85 320.1 786 30.5
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 8.2e-79 299.7 893 29.2
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 2.2e-76 291.6 358 50.8
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 4.4e-64 250.8 537 36.5
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.7e-63 248.8 871 25.0
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 2.9e-52 211.5 172 63.4
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 8.0e-50 203.4 230 47.8
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 7.5e-48 196.8 231 46.8
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 9.8e-24 116.7 84 66.7
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.1e-22 113.2 67 77.6
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 3.3e-19 101.7 90 57.8
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 7.3e-19 100.5 90 57.8
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 1.2e-16 93.2 116 48.3
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 2.6e-16 92.0 67 65.7
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 6.4e-15 87.4 90 54.4
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 8.3e-15 87.0 101 48.5
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 7.1e-14 84.0 200 34.0
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 7.1e-14 84.0 158 34.8
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 6.8e-09 67.4 37 81.1
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 4.4e-08 64.7 55 69.1


User provided reference genes

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