Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.3e-92 341.3 168 100.0
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 2.2e-88 328.9 162 99.4
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 9.3e-87 323.6 162 98.1
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.1e-86 322.4 162 98.1
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.6e-86 321.2 162 97.5
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 2.5e-84 315.5 162 95.1
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 4.3e-76 288.1 162 87.0
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 2.0e-73 279.3 162 84.6
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.1e-71 273.5 162 82.7
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 7.1e-71 270.8 164 79.9
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 1.2e-70 270.0 154 84.4
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 7.9e-70 267.3 154 83.1
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 7.9e-70 267.3 154 83.1
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 7.9e-70 267.3 154 82.5
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 2.3e-69 265.8 162 78.4
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 3.0e-69 265.4 154 81.8
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 6.7e-69 264.2 162 80.2
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.1e-68 263.5 154 81.8
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 1.1e-68 263.5 176 74.4
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.1e-68 263.5 162 79.6
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 1.5e-68 263.1 164 78.7
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 1.5e-68 263.1 162 77.2
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 2.5e-68 262.3 162 77.8
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.5e-68 262.3 154 82.5
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 3.3e-68 261.9 162 77.2
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 4.3e-68 261.5 156 82.1
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 4.3e-68 261.5 162 80.2
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 5.7e-68 261.2 154 81.2
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 5.7e-68 261.2 161 76.4
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 5.7e-68 261.2 162 77.2
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 7.4e-68 260.8 154 80.5
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 9.6e-68 260.4 162 77.8
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 2.1e-67 259.2 161 78.3
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.1e-67 259.2 161 77.6
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 3.7e-67 258.5 162 78.4
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 4.8e-67 258.1 154 78.6
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 4.8e-67 258.1 159 78.0
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 4.8e-67 258.1 159 78.0
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 4.8e-67 258.1 161 78.3
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 8.2e-67 257.3 152 81.6
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 8.2e-67 257.3 152 81.6
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 8.2e-67 257.3 162 77.2
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.1e-66 256.9 162 77.2
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 1.8e-66 256.1 162 78.4
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.4e-66 255.8 162 75.9
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 2.4e-66 255.8 154 80.5
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.4e-66 255.8 154 80.5
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.1e-66 255.4 162 76.5
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 4.1e-66 255.0 162 76.5
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 4.1e-66 255.0 162 76.5
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 4.1e-66 255.0 156 78.8
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 4.1e-66 255.0 162 76.5
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 1.2e-65 253.4 162 76.5
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 1.5e-65 253.1 156 76.9
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 2.0e-65 252.7 156 79.5
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 2.0e-65 252.7 158 78.5
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 2.0e-65 252.7 152 80.9
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 3.4e-65 251.9 164 76.8
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 5.9e-65 251.1 154 79.9
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 5.9e-65 251.1 158 77.8
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 7.6e-65 250.8 156 78.8
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 1.0e-64 250.4 162 75.3
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 1.0e-64 250.4 162 75.3
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 1.0e-64 250.4 154 79.2
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 1.0e-64 250.4 158 77.8
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 1.3e-64 250.0 162 74.7
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 1.3e-64 250.0 152 78.3
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 1.3e-64 250.0 156 78.2
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 2.9e-64 248.8 155 76.8
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 3.8e-64 248.4 155 76.1
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 6.5e-64 247.7 155 77.4
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 6.5e-64 247.7 162 75.3
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 8.4e-64 247.3 161 76.4
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.4e-63 246.5 155 77.4
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 1.4e-63 246.5 162 75.3
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 1.4e-63 246.5 164 75.0
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 4.2e-63 245.0 164 74.4
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 4.2e-63 245.0 164 70.1
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 9.3e-63 243.8 199 63.3
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 2.7e-62 242.3 140 82.9
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 2.7e-62 242.3 154 76.0
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 3.5e-62 241.9 163 73.0
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 3.5e-62 241.9 159 73.6
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 4.6e-62 241.5 162 72.8
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 6.1e-62 241.1 154 74.7
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 6.1e-62 241.1 155 75.5
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 7.9e-62 240.7 162 74.1
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 1.3e-61 240.0 163 73.6
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 1.8e-61 239.6 163 73.0
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 2.3e-61 239.2 163 73.0
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 2.3e-61 239.2 154 74.7
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.0e-61 238.8 155 76.1
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 3.9e-61 238.4 163 70.6
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 3.9e-61 238.4 153 75.2
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 6.7e-61 237.7 153 73.9
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 6.7e-61 237.7 163 71.8
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 6.7e-61 237.7 156 74.4
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.5e-60 236.5 156 73.7
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 1.9e-60 236.1 154 73.4
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 1.9e-60 236.1 154 76.6
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 2.5e-60 235.7 163 70.6
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 2.5e-60 235.7 163 70.6
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 2.5e-60 235.7 152 71.1
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 2.5e-60 235.7 155 74.2
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 3.3e-60 235.3 157 73.9
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 3.3e-60 235.3 157 73.9
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 3.3e-60 235.3 162 73.5
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 5.7e-60 234.6 157 73.9
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 5.7e-60 234.6 163 70.6
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 7.4e-60 234.2 162 72.2
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 1.3e-59 233.4 157 73.2
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 1.3e-59 233.4 163 70.6
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 1.3e-59 233.4 163 70.6
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 1.6e-59 233.0 157 73.2
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.6e-59 233.0 163 71.2
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 2.8e-59 232.3 157 73.2
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 2.8e-59 232.3 163 71.2
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 1.1e-58 230.3 155 74.2
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 1.4e-58 229.9 157 72.0
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.8e-58 229.6 156 71.8
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.8e-58 229.6 156 70.5
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 1.8e-58 229.6 137 79.6
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 2.4e-58 229.2 157 69.4
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.4e-58 229.2 156 70.5
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 3.1e-58 228.8 154 76.0
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 6.9e-58 227.6 205 59.0
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 1.5e-57 226.5 162 70.4
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 1.5e-57 226.5 140 77.9
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 2.6e-57 225.7 155 72.3
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 5.9e-57 224.6 165 69.1
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 1.0e-56 223.8 156 68.6
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 4.2e-55 218.4 159 67.3
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 5.5e-55 218.0 184 63.0
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 9.4e-55 217.2 154 70.8
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 1.6e-54 216.5 137 78.1
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 1.4e-53 213.4 159 64.2
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 5.1e-53 211.5 132 78.0
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 5.1e-53 211.5 136 75.0
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 6.7e-53 211.1 141 74.5
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 6.7e-53 211.1 153 68.6
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 2.5e-52 209.1 143 72.7
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 1.7e-51 206.5 146 68.5
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 1.1e-50 203.8 158 63.3
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 1.1e-50 203.8 159 61.6
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 2.6e-49 199.1 155 64.5
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 1.4e-47 193.4 161 62.1
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 1.2e-46 190.3 157 60.5
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 2.7e-46 189.1 155 62.6
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 1.8e-45 186.4 155 59.4
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 3.9e-45 185.3 165 59.4
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 1.4e-42 176.8 119 75.6
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.4e-42 176.8 156 57.7
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 5.0e-40 168.3 111 73.9
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 1.5e-39 166.8 169 53.3
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 6.1e-38 161.4 153 54.2
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 7.5e-36 154.5 155 58.7
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 9.7e-36 154.1 111 68.5
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.1e-31 140.6 88 77.3
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 5.2e-29 131.7 161 42.2
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 5.2e-29 131.7 156 44.9
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 2.4e-26 122.9 83 73.5
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 1.9e-23 113.2 74 71.6
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 7.2e-23 111.3 72 75.0
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 4.4e-20 102.1 68 73.5
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 1.3e-19 100.5 72 65.3
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 4.1e-18 95.5 82 58.5
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 5.4e-18 95.1 120 45.0
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 1.7e-16 90.1 88 54.5
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 1.5e-15 87.0 117 45.3
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 1.5e-15 87.0 105 45.7
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 2.5e-15 86.3 83 56.6
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.8e-13 80.1 43 79.1
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 1.8e-13 80.1 55 61.8
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 2.3e-13 79.7 169 34.3
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.3e-11 73.9 45 77.8
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 1.1e-10 70.9 73 52.1
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 5.0e-08 62.0 48 64.6
arahy.Tifrunner.gnm1.ann1.5G37N1 Arachis hypogaea HOM05D003706 ORTHO05D031576 1.2e-06 57.4 29 93.1
VMungo0331G1368 Vigna mungo HOM05D003706 ORTHO05D031576 1.2e-06 57.4 28 92.9
GSVIVG01005551001 Vitis vinifera HOM05D003706 ORTHO05D031576 4.7e-06 55.5 27 88.9
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 6.2e-06 55.1 67 43.3


User provided reference genes

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