Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2390 Fragaria x ananassa HOM05D001068 ORTHO05D003875 9.5e-56 219.9 110 100.0
FAN08G3629 Fragaria x ananassa HOM05D001068 ORTHO05D003875 5.4e-43 177.6 85 100.0
FAN13G2133 Fragaria x ananassa HOM05D001068 ORTHO05D003875 5.4e-43 177.6 85 100.0
FAN18G2254 Fragaria x ananassa HOM05D001068 ORTHO05D003875 5.4e-43 177.6 85 100.0
FAN18G3422 Fragaria x ananassa HOM05D001068 ORTHO05D003875 5.4e-43 177.6 85 100.0
FAN18G4353 Fragaria x ananassa HOM05D001068 ORTHO05D003875 5.4e-43 177.6 85 100.0
FAN04G2918 Fragaria x ananassa HOM05D001068 ORTHO05D003875 1.6e-42 176.0 85 98.8
FvH4_5g19470 Fragaria vesca HOM05D001068 ORTHO05D003875 4.6e-42 174.5 85 98.8
Prupe.5G065100 Prunus persica HOM05D001068 ORTHO05D003875 1.3e-41 172.9 85 94.1
RcHm_v2.0_Chr7g0204041 Rosa chinensis HOM05D001068 ORTHO05D003875 8.6e-41 170.2 85 96.5
MD04G1060500 Malus domestica HOM05D001068 ORTHO05D003875 5.6e-40 167.5 96 81.2
Cpa.g.sc89.71 Carica papaya HOM05D001068 ORTHO05D003875 4.7e-39 164.5 84 90.5
Gohir.A07G215000 Gossypium hirsutum HOM05D000366 ORTHO05D000437 1.1e-38 163.3 87 85.1
QL12p011360 Quercus lobata HOM05D001068 ORTHO05D003875 1.4e-38 162.9 85 87.1
Atru.chr9.1272 Acer truncatum HOM05D001068 ORTHO05D003875 1.8e-38 162.5 85 88.2
Gohir.A12G215400 Gossypium hirsutum HOM05D001068 ORTHO05D003875 2.3e-38 162.2 85 87.1
Gorai.008G233600 Gossypium raimondii HOM05D001068 ORTHO05D003875 2.3e-38 162.2 85 87.1
Gohir.D11G026600 Gossypium hirsutum HOM05D001068 ORTHO05D003875 3.1e-38 161.8 85 87.1
Gorai.007G028900 Gossypium raimondii HOM05D001068 ORTHO05D003875 3.1e-38 161.8 85 87.1
CSS0004981 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 4.0e-38 161.4 85 87.1
Gohir.A11G027400 Gossypium hirsutum HOM05D001068 ORTHO05D003875 6.8e-38 160.6 85 85.9
TWI15G0242 Tripterygium wilfordii HOM05D001068 ORTHO05D003875 6.8e-38 160.6 85 87.1
EL10Ac5g12342 Beta vulgaris HOM05D001068 ORTHO05D003875 8.9e-38 160.2 85 87.1
Gohir.D12G218000 Gossypium hirsutum HOM05D001068 ORTHO05D003875 8.9e-38 160.2 85 85.9
CANSAT21G1427 Cannabis sativa HOM05D001068 ORTHO05D003875 1.2e-37 159.8 85 87.1
Duzib084G1186 Durio zibethinus HOM05D001068 ORTHO05D003875 1.2e-37 159.8 85 88.2
Manes.02G041600 Manihot esculenta HOM05D001068 ORTHO05D003875 1.5e-37 159.5 85 88.2
PSO063G6720 Papaver somniferum HOM05D001068 ORTHO05D003875 1.5e-37 159.5 85 87.1
PSO782G5462 Papaver somniferum HOM05D001068 ORTHO05D003875 1.5e-37 159.5 85 87.1
COL.COLO4_37120 Corchorus olitorius HOM05D001068 ORTHO05D003875 2.0e-37 159.1 84 89.3
Duzib205G0096 Durio zibethinus HOM05D001068 ORTHO05D003875 2.0e-37 159.1 84 86.9
Sc22g0001000 Simmondsia chinensis HOM05D001068 ORTHO05D003875 2.0e-37 159.1 85 85.9
Nn6g33873 Nelumbo nucifera HOM05D001068 ORTHO05D003875 3.4e-37 158.3 85 84.7
Eucgr.E00406 Eucalyptus grandis HOM05D001068 ORTHO05D003875 4.4e-37 157.9 85 85.9
Thecc.03G247900 Theobroma cacao HOM05D001068 ORTHO05D003875 4.4e-37 157.9 85 85.9
Aqoxy3G02817 Aquilegia oxysepala HOM05D001068 ORTHO05D003875 5.8e-37 157.5 85 85.9
CSS0023687 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 5.8e-37 157.5 85 85.9
SGA_v2.0_scaffold199G41219 Striga asiatica HOM05D001068 ORTHO05D003875 5.8e-37 157.5 85 84.7
Ah.07g198830 Amaranthus hybridus HOM05D001068 ORTHO05D003875 7.5e-37 157.1 85 83.5
AUR62007112 Chenopodium quinoa HOM05D001068 ORTHO05D003875 7.5e-37 157.1 85 85.9
AUR62019981 Chenopodium quinoa HOM05D001068 ORTHO05D003875 7.5e-37 157.1 85 85.9
CsaV3_5G004440 Cucumis sativus L. HOM05D001068 ORTHO05D003875 7.5e-37 157.1 85 83.5
Dinv21659 Davidia involucrata HOM05D001068 ORTHO05D003875 7.5e-37 157.1 85 83.5
Dinv39170 Davidia involucrata HOM05D001068 ORTHO05D003875 7.5e-37 157.1 85 83.5
Sed0012317 Sechium edule HOM05D001068 ORTHO05D003875 7.5e-37 157.1 85 83.5
CiPaw.12G050100 Carya illinoinensis HOM05D001068 ORTHO05D003875 9.8e-37 156.8 85 85.9
DCAR_027764 Daucus carota HOM05D001068 ORTHO05D003875 9.8e-37 156.8 85 83.5
Manes.01G083700 Manihot esculenta HOM05D001068 ORTHO05D003875 1.3e-36 156.4 85 85.9
SalBow6G3759 Salvia bowleyana HOM05D001068 ORTHO05D003875 1.3e-36 156.4 85 82.4
TWI81G0453 Tripterygium wilfordii HOM05D001068 ORTHO05D003875 1.3e-36 156.4 96 76.0
Migut.A01136 Erythranthe guttata HOM05D001068 ORTHO05D003875 1.7e-36 156.0 85 83.5
CiPaw.11G081900 Carya illinoinensis HOM05D001068 ORTHO05D003875 2.2e-36 155.6 90 82.2
TAR629G1427 Trochodendron aralioides HOM05D001068 ORTHO05D003875 2.2e-36 155.6 85 83.5
Actinidia14405 Actinidia chinensis HOM05D001068 ORTHO05D003875 4.9e-36 154.5 85 83.5
Ciclev10019196m.g Citrus clementina HOM05D001068 ORTHO05D003875 4.9e-36 154.5 85 84.7
PGR042G1327 Punica granatum HOM05D001068 ORTHO05D003875 4.9e-36 154.5 85 82.4
Cfa012691 Carpinus fangiana HOM05D001068 ORTHO05D003875 6.4e-36 154.1 85 83.5
ClCG01G004240 Citrullus lanatus HOM05D001068 ORTHO05D003875 6.4e-36 154.1 85 82.4
MELO3C005515.2 Cucumis melo HOM05D001068 ORTHO05D003875 6.4e-36 154.1 85 82.4
Duzib068G1125 Durio zibethinus HOM05D001068 ORTHO05D003875 1.4e-35 152.9 84 84.5
Potri.001G155500 Populus trichocarpa HOM05D001068 ORTHO05D003875 1.4e-35 152.9 84 83.3
Nitab4.5_0001381g0040 Nicotiana tabacum HOM05D001068 ORTHO05D003875 2.4e-35 152.1 85 83.5
Sabra01G0125000 Salix brachista HOM05D001068 ORTHO05D003875 2.4e-35 152.1 85 81.2
Sabra01G0125200 Salix brachista HOM05D001068 ORTHO05D003875 2.4e-35 152.1 85 81.2
CDE02G3830 Ceratophyllum demersum HOM05D001068 ORTHO05D003875 3.2e-35 151.8 85 83.5
Hma1.2p1_0316F.1_g122820 Hydrangea macrophylla HOM05D001068 ORTHO05D003875 3.2e-35 151.8 85 82.4
Hund14578 Selenicereus undatus HOM05D001068 ORTHO05D003875 3.2e-35 151.8 85 83.5
Lalb_Chr05g0214351 Lupinus albus HOM05D001068 ORTHO05D003875 4.1e-35 151.4 83 85.5
Hund28547 Selenicereus undatus HOM05D001068 ORTHO05D003875 4.1e-35 151.4 84 81.0
Hund28548 Selenicereus undatus HOM05D001068 ORTHO05D003875 4.1e-35 151.4 84 81.0
MSTRG.12124 Avicennia marina HOM05D001068 ORTHO05D003875 5.4e-35 151.0 85 81.2
BcaNung00152 Brassica carinata HOM05D001068 ORTHO05D003875 5.4e-35 151.0 85 84.7
Gohir.A09G196500 Gossypium hirsutum HOM05D001068 ORTHO05D003875 5.4e-35 151.0 85 81.2
Nitab4.5_0003050g0030 Nicotiana tabacum HOM05D001068 ORTHO05D003875 5.4e-35 151.0 85 82.4
RcHm_v2.0_Chr3g0481221 Rosa chinensis HOM05D001068 ORTHO05D003875 5.4e-35 151.0 85 80.0
AL7G37930 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 7.0e-35 150.6 85 83.5
Thhalv10024621m.g Eutrema salsugineum HOM05D001068 ORTHO05D003875 7.0e-35 150.6 85 83.5
Gohir.D09G191100 Gossypium hirsutum HOM05D001068 ORTHO05D003875 7.0e-35 150.6 85 80.0
Gorai.006G213900 Gossypium raimondii HOM05D001068 ORTHO05D003875 7.0e-35 150.6 85 80.0
Os06g0103500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D003875 7.0e-35 150.6 83 79.5
Peaxi162Scf00214g00048 Petunia axillaris HOM05D001068 ORTHO05D003875 7.0e-35 150.6 85 82.4
HPP92_022429 Vanilla planifolia HOM05D001068 ORTHO05D003875 7.0e-35 150.6 85 81.2
Potri.003G079200 Populus trichocarpa HOM05D001068 ORTHO05D003875 9.2e-35 150.2 84 81.0
Rhsim11G0003700 Rhododendron simsii HOM05D001068 ORTHO05D003875 9.2e-35 150.2 89 76.4
Sabra03G0049400 Salix brachista HOM05D001068 ORTHO05D003875 9.2e-35 150.2 84 81.0
Sopen08g026880 Solanum pennellii HOM05D001068 ORTHO05D003875 9.2e-35 150.2 85 80.0
THA.LOC104812770 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 9.2e-35 150.2 85 82.4
THA.LOC104814467 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 9.2e-35 150.2 85 82.4
THA.LOC104815504 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 9.2e-35 150.2 85 81.2
Ah.12g054350 Amaranthus hybridus HOM05D001068 ORTHO05D003875 1.2e-34 149.8 85 85.9
BcaC09g50411 Brassica carinata HOM05D001068 ORTHO05D003875 1.2e-34 149.8 85 83.5
A01p20470 Brassica napus HOM05D001068 ORTHO05D003875 1.2e-34 149.8 85 83.5
C01p25740 Brassica napus HOM05D001068 ORTHO05D003875 1.2e-34 149.8 85 83.5
BolC1t02524H Brassica oleracea HOM05D001068 ORTHO05D003875 1.2e-34 149.8 85 83.5
BraA01t01975Z Brassica rapa HOM05D001068 ORTHO05D003875 1.2e-34 149.8 85 83.5
DCAR_008508 Daucus carota HOM05D001068 ORTHO05D003875 1.2e-34 149.8 85 80.0
Glyma.14G125300 Glycine max HOM05D001068 ORTHO05D003875 1.2e-34 149.8 90 77.8
Aa31LG2G12940 Aethionema arabicum HOM05D001068 ORTHO05D003875 1.6e-34 149.4 85 82.4
AT4G16760 Arabidopsis thaliana HOM05D001068 ORTHO05D003875 2.1e-34 149.1 85 82.4
Carub.0007s2462 Capsella rubella HOM05D001068 ORTHO05D003875 2.1e-34 149.1 85 82.4
CARHR129930 Cardamine hirsuta HOM05D001068 ORTHO05D003875 2.1e-34 149.1 85 82.4
RcHm_v2.0_Chr3g0481201 Rosa chinensis HOM05D001068 ORTHO05D003875 2.1e-34 149.1 85 78.8
Cc08_g12140 Coffea canephora HOM05D001068 ORTHO05D003875 2.7e-34 148.7 85 81.2
Thhalv10016360m.g Eutrema salsugineum HOM05D001068 ORTHO05D003875 2.7e-34 148.7 85 82.4
TPR.G37610 Trifolium pratense HOM05D001068 ORTHO05D003875 2.7e-34 148.7 85 78.8
CAN.G1178.15 Capsicum annuum HOM05D001068 ORTHO05D003875 4.6e-34 147.9 85 80.0
Sp7g17360 Schrenkiella parvula HOM05D001068 ORTHO05D003875 4.6e-34 147.9 85 83.5
PGSC0003DMG400004828 Solanum tuberosum HOM05D001068 ORTHO05D003875 6.0e-34 147.5 85 80.0
Lj8A269T38 Lonicera japonica HOM05D001068 ORTHO05D003875 1.0e-33 146.7 85 80.0
Medtr4g100640 Medicago truncatula HOM05D001068 ORTHO05D003875 1.0e-33 146.7 85 78.8
Zm00001eb376020 Zea mays HOM05D001068 ORTHO05D003875 1.0e-33 146.7 83 79.5
BcaB01g03886 Brassica carinata HOM05D001068 ORTHO05D003875 1.3e-33 146.4 85 80.0
Ca_24593_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 1.3e-33 146.4 84 78.6
Glyma.01G207500 Glycine max HOM05D001068 ORTHO05D003875 1.3e-33 146.4 85 80.0
BraA03t11221Z Brassica rapa HOM05D001068 ORTHO05D003875 1.7e-33 146.0 85 78.8
CARHR223330 Cardamine hirsuta HOM05D001068 ORTHO05D003875 1.7e-33 146.0 85 80.0
Lj4g0020838 Lotus japonicus HOM05D001068 ORTHO05D003875 1.7e-33 146.0 85 80.0
PGSC0003DMG400004827 Solanum tuberosum HOM05D001068 ORTHO05D003875 1.7e-33 146.0 85 77.6
AL4G31770 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 2.3e-33 145.6 84 81.0
arahy.Tifrunner.gnm1.ann1.MWEA9C Arachis hypogaea HOM05D001068 ORTHO05D003875 3.9e-33 144.8 85 76.5
arahy.Tifrunner.gnm1.ann1.QXG3RX Arachis hypogaea HOM05D001068 ORTHO05D003875 3.9e-33 144.8 85 76.5
Carub.0004s1742 Capsella rubella HOM05D001068 ORTHO05D003875 3.9e-33 144.8 85 80.0
Glyma.11G035200 Glycine max HOM05D001068 ORTHO05D003875 3.9e-33 144.8 85 78.8
Medtr5g012920 Medicago truncatula HOM05D001068 ORTHO05D003875 3.9e-33 144.8 85 76.5
Phvul.003G222800 Phaseolus vulgaris HOM05D001068 ORTHO05D003875 3.9e-33 144.8 85 80.0
Psat4g072960 Pisum sativum HOM05D001068 ORTHO05D003875 5.0e-33 144.4 85 76.5
DCAR_004991 Daucus carota HOM05D001068 ORTHO05D003875 6.6e-33 144.1 85 78.8
Hma1.2p1_1136F.1_g260540 Hydrangea macrophylla HOM05D001068 ORTHO05D003875 8.6e-33 143.7 84 78.6
vmacro00007 Vaccinium macrocarpon HOM05D001068 ORTHO05D003875 8.6e-33 143.7 85 80.0
arahy.Tifrunner.gnm1.ann1.I9A8PV Arachis hypogaea HOM05D001068 ORTHO05D003875 1.1e-32 143.3 85 80.0
arahy.Tifrunner.gnm1.ann1.ZPM9RR Arachis hypogaea HOM05D001068 ORTHO05D003875 1.1e-32 143.3 85 80.0
AT2G35690 Arabidopsis thaliana HOM05D001068 ORTHO05D003875 1.5e-32 142.9 84 79.8
Lalb_Chr16g0386611 Lupinus albus HOM05D001068 ORTHO05D003875 1.5e-32 142.9 85 77.6
VMungo1215G1615 Vigna mungo HOM05D001068 ORTHO05D003875 1.5e-32 142.9 85 78.8
ATR0057G009 Amborella trichopoda HOM05D001068 ORTHO05D003875 1.9e-32 142.5 82 78.0
BcaC01g05713 Brassica carinata HOM05D001068 ORTHO05D003875 1.9e-32 142.5 85 76.5
A03p19670 Brassica napus HOM05D001068 ORTHO05D003875 1.9e-32 142.5 85 76.5
C03p22930 Brassica napus HOM05D001068 ORTHO05D003875 1.9e-32 142.5 85 76.5
BolC3t14694H Brassica oleracea HOM05D001068 ORTHO05D003875 1.9e-32 142.5 85 76.5
Ca_21988_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 1.9e-32 142.5 85 77.6
Lsat_1_v5_gn_6_18061 Lactuca sativa HOM05D001068 ORTHO05D003875 1.9e-32 142.5 84 81.0
Lalb_Chr05g0221141 Lupinus albus HOM05D001068 ORTHO05D003875 1.9e-32 142.5 85 77.6
VMungo0251G0971 Vigna mungo HOM05D001068 ORTHO05D003875 1.9e-32 142.5 85 78.8
Glyma.05G062200 Glycine max HOM05D001068 ORTHO05D003875 2.5e-32 142.1 85 78.8
Phvul.002G056700 Phaseolus vulgaris HOM05D001068 ORTHO05D003875 2.5e-32 142.1 85 77.6
Psat2g176520 Pisum sativum HOM05D001068 ORTHO05D003875 3.3e-32 141.7 85 76.5
Oeu040705.1 Olea europaea HOM05D001068 ORTHO05D003875 4.3e-32 141.4 84 77.4
Sopen08g026890 Solanum pennellii HOM05D001068 ORTHO05D003875 4.3e-32 141.4 85 75.3
ECA233G2258 Erigeron canadensis HOM05D001068 ORTHO05D003875 5.6e-32 141.0 84 78.6
HanXRQChr16g0501091 Helianthus annuus HOM05D001068 ORTHO05D003875 5.6e-32 141.0 84 79.8
Glyma.17G144000 Glycine max HOM05D001068 ORTHO05D003875 7.3e-32 140.6 85 77.6
Sed0021431 Sechium edule HOM05D001068 ORTHO05D003875 7.3e-32 140.6 85 75.3
TPR.G18124 Trifolium pratense HOM05D001068 ORTHO05D003875 7.3e-32 140.6 85 74.1
THA.LOC104806669 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 1.2e-31 139.8 84 79.8
Prupe.7G067100 Prunus persica HOM05D001068 ORTHO05D003875 2.1e-31 139.0 88 76.1
Lalb_Chr09g0329981 Lupinus albus HOM05D001068 ORTHO05D003875 3.6e-31 138.3 85 74.1
Lj2g0000811 Lotus japonicus HOM05D001068 ORTHO05D003875 4.7e-31 137.9 85 75.3
Solyc08g078400.3 Solanum lycopersicum HOM05D001068 ORTHO05D003875 8.1e-31 137.1 85 72.9
unitig_8.g3019 Utricularia gibba HOM05D001068 ORTHO05D003875 1.8e-30 136.0 85 75.3
Lalb_Chr05g0214331 Lupinus albus HOM05D001068 ORTHO05D003875 4.0e-30 134.8 83 77.1
CSS0035524 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 5.2e-30 134.4 77 83.1
DCAR_031638 Daucus carota HOM05D001068 ORTHO05D003875 8.9e-30 133.7 76 80.3
SMO358G0542 Selaginella moellendorffii HOM05D001068 ORTHO05D003875 2.6e-29 132.1 96 65.6
ECA233G3500 Erigeron canadensis HOM05D001068 ORTHO05D003875 7.5e-29 130.6 96 65.6
Mapoly0169s0009 Marchantia polymorpha HOM05D001068 ORTHO05D003875 9.9e-29 130.2 86 65.1
HanXRQChr08g0227741 Helianthus annuus HOM05D001068 ORTHO05D003875 3.7e-28 128.3 84 70.2
Pp3c14_14860 Physcomitrium patens HOM05D001068 ORTHO05D003875 7.1e-27 124.0 86 64.0
Zm00001eb379490 Zea mays HOM05D001068 ORTHO05D003875 1.7e-25 119.4 83 66.3
Haze_07942 Corylus avellana HOM05D001068 ORTHO05D003875 3.9e-25 118.2 139 48.2
TPR.G18139 Trifolium pratense HOM05D001068 ORTHO05D003875 4.3e-24 114.8 74 68.9
MD13G1127300 Malus domestica HOM05D001068 ORTHO05D003875 1.2e-23 113.2 86 66.3
Sp4g17950 Schrenkiella parvula HOM05D001068 ORTHO05D003875 4.4e-21 104.8 85 63.5
SHI09350 Sapria himalayana HOM05D001068 ORTHO05D003875 1.9e-16 89.4 44 86.4
CBR_g30062 Chara braunii HOM05D001068 ORTHO05D003875 7.3e-16 87.4 53 75.5
Cre16.g689050 Chlamydomonas reinhardtii HOM05D001068 ORTHO05D003875 1.2e-15 86.7 73 53.4
FAN14G1649 Fragaria x ananassa HOM05D004307 ORTHO05D005068 2.9e-12 75.5 84 45.2
CSS0037699 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 8.4e-12 73.9 37 89.2
Cfa021966 Carpinus fangiana HOM05D001068 ORTHO05D003875 8.4e-12 73.9 68 47.1
Gohir.A07G153500 Gossypium hirsutum HOM05D000366 ORTHO05D000437 3.2e-11 72.0 41 78.0
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.6e-10 69.7 44 70.5
MCO09G755 Micromonas commoda HOM05D001068 ORTHO05D003875 5.1e-09 64.7 51 56.9
FAN05G2079 Fragaria x ananassa HOM05D001068 ORTHO05D003875 6.6e-09 64.3 83 43.4


User provided reference genes

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