Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-250 869.4 441 100.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.3e-249 865.9 441 99.5
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.4e-245 850.9 441 98.0
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 8.3e-244 846.7 442 97.7
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.3e-236 822.8 441 94.3
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.3e-228 796.2 441 90.7
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 3.7e-220 768.1 435 88.5
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 4.6e-218 761.1 435 87.6
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 9.3e-195 683.7 443 78.8
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.3e-192 675.2 435 78.9
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.2e-187 658.7 337 98.2
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 4.2e-187 658.3 435 75.9
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 9.3e-187 657.1 436 75.5
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 9.3e-187 657.1 435 75.9
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 7.9e-186 654.1 436 75.2
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.3e-185 652.5 438 76.0
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 3.9e-185 651.7 435 75.9
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 6.7e-185 651.0 435 75.6
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.9e-184 649.4 435 74.7
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.5e-184 649.0 435 75.2
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.7e-183 645.2 435 75.4
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.4e-182 643.3 435 74.9
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 9.0e-182 640.6 435 73.8
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 5.8e-181 637.9 433 75.1
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 7.6e-181 637.5 442 73.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 5.5e-179 631.3 439 72.9
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 4.6e-178 628.2 435 72.2
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 7.9e-178 627.5 451 71.4
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.8e-177 626.3 439 72.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.8e-177 626.3 439 72.9
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.8e-177 626.3 435 71.7
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.0e-177 625.5 436 72.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 3.9e-177 625.2 439 72.4
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 3.9e-177 625.2 466 68.9
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 8.7e-177 624.0 439 72.7
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 3.3e-176 622.1 436 73.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 7.4e-176 620.9 435 73.1
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 7.4e-176 620.9 435 73.1
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.3e-175 620.2 433 73.2
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.3e-175 620.2 435 71.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.1e-175 619.4 435 71.7
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 6.2e-175 617.8 438 72.1
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 8.2e-175 617.5 436 70.6
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 8.2e-175 617.5 436 72.2
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.8e-174 616.3 436 73.2
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 3.1e-174 615.5 438 71.5
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 4.0e-174 615.1 438 72.8
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.0e-174 614.0 435 71.0
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 9.0e-174 614.0 454 68.7
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.0e-173 612.8 461 69.0
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 7.6e-173 610.9 444 70.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 3.8e-172 608.6 455 68.4
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 5.5e-171 604.7 438 69.6
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 7.9e-170 600.9 411 74.0
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.3e-169 599.4 431 69.1
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.3e-169 599.4 449 67.9
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.3e-168 595.1 402 73.9
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 2.2e-167 592.8 446 69.5
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 8.2e-167 590.9 431 69.1
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 5.9e-165 584.7 441 67.8
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.0e-164 583.9 438 67.8
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 6.5e-164 581.3 438 66.9
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 8.5e-164 580.9 393 75.6
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.0e-161 573.9 404 72.5
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.1e-160 570.5 393 75.1
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 4.3e-160 568.5 443 66.8
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 5.7e-160 568.2 436 67.7
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 5.7e-160 568.2 433 65.4
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.6e-157 559.3 433 64.7
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 5.9e-157 558.1 439 67.2
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.0e-156 555.1 436 66.3
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.4e-155 553.5 434 63.8
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 5.5e-155 551.6 437 64.1
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.1e-154 549.7 454 61.0
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 6.1e-154 548.1 441 68.3
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 6.1e-154 548.1 422 67.1
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 7.9e-154 547.7 439 64.5
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.0e-153 545.8 437 62.5
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.9e-153 545.4 432 63.0
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 4.4e-152 542.0 451 61.0
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.7e-151 538.9 453 60.5
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 6.3e-151 538.1 457 60.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 8.2e-151 537.7 458 60.0
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.0e-150 534.6 436 65.6
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 3.5e-149 532.3 454 61.2
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 4.5e-149 531.9 386 68.9
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.3e-148 530.4 437 62.9
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.2e-148 529.6 454 61.0
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 3.8e-148 528.9 429 64.6
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 2.5e-147 526.2 379 70.4
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 4.2e-147 525.4 319 81.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.2e-146 523.9 438 62.8
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 6.1e-146 521.5 384 67.7
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 2.3e-145 519.6 397 68.0
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.2e-145 518.5 395 66.8
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 8.8e-145 517.7 397 67.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 3.3e-144 515.8 436 62.2
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 5.7e-144 515.0 436 62.6
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.8e-143 512.7 440 61.8
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.1e-142 508.8 385 68.3
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.3e-142 508.4 439 60.1
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 7.0e-142 508.1 344 75.0
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 4.7e-138 495.4 435 58.4
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-137 493.8 437 62.7
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 4.0e-137 492.3 432 61.6
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-136 490.7 352 71.0
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.8e-135 486.1 307 77.2
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.7e-135 485.7 422 59.0
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.6e-133 480.3 423 59.1
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.7e-133 479.6 469 57.6
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.3e-129 466.5 428 57.7
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.2e-128 464.2 430 57.2
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.2e-127 459.9 299 77.3
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.8e-127 459.5 430 56.0
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 8.0e-122 441.4 423 55.6
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 4.1e-118 429.1 439 53.8
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.5e-117 426.0 355 61.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.9e-116 422.5 433 53.8
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.3e-115 419.5 387 57.9
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 3.7e-103 379.4 325 61.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 3.0e-100 369.8 441 50.8
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 3.6e-98 362.8 282 65.6
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.6e-96 355.1 281 63.7
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 4.9e-95 352.4 287 62.7
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.0e-92 344.7 281 62.6
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.0e-92 344.7 285 62.5
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.6e-90 337.4 354 51.7
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 2.6e-88 330.1 294 57.8
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 6.4e-87 325.5 233 67.8
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-86 324.7 281 60.1
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 9.6e-83 311.6 329 50.2
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.0e-76 291.6 157 96.2
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.1e-74 283.9 177 83.6
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.6e-74 283.1 157 92.4
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 4.8e-74 282.7 156 92.3
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 5.8e-72 275.8 155 91.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.4e-70 270.4 163 77.3
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 9.3e-70 268.5 368 44.0
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 3.0e-68 263.5 156 85.9
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.5e-67 261.2 145 90.3
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.8e-66 256.9 204 60.8
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.2e-61 241.5 282 50.0
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.9e-60 236.5 499 36.5
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.1e-59 235.0 141 83.0
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.4e-59 232.3 133 90.2
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.8e-58 229.6 184 66.3
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 5.0e-55 219.5 260 53.5
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.4e-54 218.0 182 62.6
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.9e-53 212.2 238 47.5
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 9.7e-51 205.3 484 32.9
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.1e-49 201.8 132 83.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 3.4e-48 196.8 154 61.7
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.3e-42 178.3 178 58.4
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 8.2e-42 175.6 106 84.9
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.1e-41 175.3 99 91.9
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.7e-40 169.1 311 38.3
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.4e-36 158.3 140 58.6
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.3e-31 141.7 120 61.7
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.2e-29 135.2 146 52.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.0e-23 115.5 68 88.2
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.3e-23 115.2 215 36.7
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.2e-20 103.2 98 54.1
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.2e-20 103.2 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.7e-18 97.1 56 91.1
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.1e-14 85.5 262 29.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.0e-12 79.0 57 68.4
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 6.8e-12 76.3 70 52.9
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.9e-07 60.8 76 47.4
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 3.8e-07 60.5 50 58.0


User provided reference genes

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