Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1945 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.9e-81 305.8 158 100.0
FAN13G3269 Fragaria x ananassa HOM05D000100 ORTHO05D000052 3.7e-69 265.0 144 95.1
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 6.2e-24 114.8 67 83.6
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 1.4e-23 113.6 67 83.6
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.4e-23 113.6 67 83.6
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.4e-23 113.6 67 83.6
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.2e-22 110.5 67 79.1
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.0e-22 109.8 67 79.1
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 2.4e-20 102.8 67 71.6
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 3.2e-20 102.4 67 74.6
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 5.4e-20 101.7 67 71.6
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 9.2e-20 100.9 70 71.4
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 9.2e-20 100.9 67 73.1
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 1.2e-19 100.5 67 73.1
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 2.7e-19 99.4 67 70.1
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 3.5e-19 99.0 67 71.6
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 3.5e-19 99.0 67 73.1
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 6.0e-19 98.2 70 68.6
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 7.8e-19 97.8 67 68.7
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 7.8e-19 97.8 67 71.6
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 1.0e-18 97.4 70 67.1
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 1.3e-18 97.1 65 67.7
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 1.3e-18 97.1 67 67.2
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 2.3e-18 96.3 67 71.6
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 5.0e-18 95.1 65 69.2
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 6.6e-18 94.7 67 68.7
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 6.6e-18 94.7 67 67.2
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 1.1e-17 94.0 65 69.2
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 2.5e-17 92.8 67 65.7
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 2.5e-17 92.8 67 68.7
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 4.3e-17 92.0 67 67.2
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 5.6e-17 91.7 67 64.2
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 5.6e-17 91.7 67 65.7
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 5.6e-17 91.7 67 68.7
MD17G1262800 Malus domestica HOM05D005266 ORTHO05D006416 9.5e-17 90.9 67 67.2
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 9.5e-17 90.9 70 62.9
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 1.2e-16 90.5 67 65.7
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 1.2e-16 90.5 67 70.1
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 2.1e-16 89.7 67 62.7
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 2.1e-16 89.7 67 62.7
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 2.8e-16 89.4 70 61.4
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 2.8e-16 89.4 67 62.7
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 3.6e-16 89.0 67 62.7
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 3.6e-16 89.0 65 66.2
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 4.7e-16 88.6 67 67.2
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 6.2e-16 88.2 67 64.2
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 6.2e-16 88.2 70 61.4
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 8.1e-16 87.8 67 64.2
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 8.1e-16 87.8 67 62.7
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 1.1e-15 87.4 67 62.7
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 1.1e-15 87.4 67 62.7
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 1.1e-15 87.4 67 64.2
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 1.1e-15 87.4 67 61.2
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.1e-15 87.4 67 65.7
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 1.1e-15 87.4 67 65.7
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 1.1e-15 87.4 65 64.6
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.1e-15 87.4 67 61.2
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 1.4e-15 87.0 67 61.2
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 1.4e-15 87.0 67 61.2
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.4e-15 87.0 67 65.7
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 1.4e-15 87.0 67 61.2
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.8e-15 86.7 64 64.1
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 1.8e-15 86.7 67 64.2
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 2.3e-15 86.3 67 61.2
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 4.0e-15 85.5 67 62.7
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 4.0e-15 85.5 67 62.7
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 4.0e-15 85.5 67 62.7
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 4.0e-15 85.5 67 62.7
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 4.0e-15 85.5 67 62.7
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 4.0e-15 85.5 69 59.4
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 4.0e-15 85.5 75 53.3
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 6.8e-15 84.7 67 61.2
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 6.8e-15 84.7 67 61.2
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 1.2e-14 84.0 67 55.2
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 1.2e-14 84.0 67 59.7
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 1.5e-14 83.6 67 61.2
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 1.5e-14 83.6 67 62.7
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 1.5e-14 83.6 70 61.4
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 3.4e-14 82.4 67 59.7
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 4.4e-14 82.0 67 59.7
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 5.8e-14 81.6 67 61.2
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 5.8e-14 81.6 67 59.7
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 5.8e-14 81.6 67 55.2
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 5.8e-14 81.6 67 55.2
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 7.5e-14 81.3 70 58.6
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 9.8e-14 80.9 77 53.2
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 1.3e-13 80.5 67 58.2
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 1.7e-13 80.1 67 50.7
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 3.7e-13 79.0 67 53.7
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 3.7e-13 79.0 67 53.7
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 3.7e-13 79.0 67 55.2
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 4.9e-13 78.6 67 55.2
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 4.9e-13 78.6 68 57.4
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 8.3e-13 77.8 64 54.7
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 1.4e-12 77.0 67 55.2
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 3.2e-12 75.9 67 53.7
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 4.1e-12 75.5 67 53.7
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 5.4e-12 75.1 67 52.2
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 1.2e-11 73.9 67 52.2
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 1.2e-11 73.9 68 54.4
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 3.5e-11 72.4 67 56.7
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 3.5e-11 72.4 67 52.2
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 1.0e-10 70.9 108 41.7
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 3.9e-10 68.9 67 47.8
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 6.6e-10 68.2 53 58.5
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 6.6e-10 68.2 67 52.2
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 1.1e-09 67.4 68 52.9
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 3.3e-09 65.9 59 47.5
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 7.3e-09 64.7 92 40.2


User provided reference genes

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