Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.0e-37 159.5 75 100.0
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 5.1e-37 157.1 75 98.7
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 3.1e-34 147.9 75 93.3
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.1e-34 147.9 75 93.3
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.0e-33 145.2 75 92.0
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-33 144.8 75 90.7
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 3.4e-33 144.4 75 90.7
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.5e-33 144.1 75 90.7
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.7e-33 143.3 75 89.3
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.8e-32 141.0 75 89.3
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 2.0e-25 118.6 76 77.6
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 2.6e-25 118.2 76 76.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.5e-25 117.5 75 72.0
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 8.5e-24 113.2 75 72.0
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.2e-22 109.4 76 72.4
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 2.1e-22 108.6 74 67.6
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.7e-22 108.2 70 71.4
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 6.1e-22 107.1 74 71.6
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.7e-21 103.6 76 68.4
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.1e-20 102.8 75 68.0
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.5e-20 102.4 73 69.9
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 2.0e-20 102.1 73 71.2
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.0e-20 102.1 76 67.1
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 4.4e-20 100.9 73 67.1
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 5.7e-20 100.5 74 67.6
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 5.7e-20 100.5 73 67.1
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 9.7e-20 99.8 76 64.5
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.3e-19 99.4 73 68.5
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.3e-19 99.4 73 69.9
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.3e-19 99.4 73 69.9
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.3e-19 99.4 73 69.9
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.3e-19 99.4 77 67.5
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.3e-19 99.4 51 90.2
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.3e-19 99.4 73 64.4
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.7e-19 99.0 75 66.7
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 3.7e-19 97.8 71 66.2
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 3.7e-19 97.8 71 66.2
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 3.7e-19 97.8 71 66.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 4.8e-19 97.4 73 64.4
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 4.8e-19 97.4 73 65.8
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 6.3e-19 97.1 76 67.1
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 8.2e-19 96.7 72 65.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.1e-18 96.3 73 68.5
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.4e-18 95.9 71 62.0
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.4e-18 95.9 71 63.4
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.4e-18 95.9 71 62.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 2.4e-18 95.1 71 60.6
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.1e-18 94.4 73 65.8
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 4.1e-18 94.4 76 64.5
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 5.3e-18 94.0 76 64.5
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 7.0e-18 93.6 76 63.2
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 9.1e-18 93.2 69 65.2
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 9.1e-18 93.2 70 65.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.2e-17 92.8 71 63.4
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.2e-17 92.8 70 64.3
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.6e-17 92.4 73 64.4
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.6e-17 92.4 73 67.1
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.6e-17 92.4 73 65.8
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 2.0e-17 92.0 74 58.1
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 3.5e-17 91.3 72 66.7
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 4.5e-17 90.9 71 62.0
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 4.5e-17 90.9 73 64.4
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 4.5e-17 90.9 78 56.4
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 5.9e-17 90.5 67 62.7
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 7.7e-17 90.1 74 60.8
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 7.7e-17 90.1 74 59.5
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 7.7e-17 90.1 70 58.6
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.3e-16 89.4 72 62.5
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.3e-16 89.4 71 64.8
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.2e-16 88.6 74 59.5
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.2e-16 88.6 74 56.8
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 2.9e-16 88.2 65 70.8
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.9e-16 88.2 71 64.8
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 3.8e-16 87.8 70 55.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.0e-16 87.4 71 63.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 5.0e-16 87.4 72 55.6
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 5.0e-16 87.4 73 64.4
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 6.5e-16 87.0 74 58.1
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.1e-15 86.3 72 62.5
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.1e-15 86.3 73 60.3
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.1e-15 86.3 70 55.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.1e-15 86.3 74 56.8
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.5e-15 85.9 72 63.9
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.5e-15 85.9 72 61.1
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 2.5e-15 85.1 73 56.2
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.5e-15 85.1 70 57.1
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.2e-15 84.7 72 61.1
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.2e-15 84.7 73 58.9
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 3.2e-15 84.7 70 57.1
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 3.2e-15 84.7 76 53.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.2e-15 84.7 76 55.3
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 4.2e-15 84.3 72 61.1
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 4.2e-15 84.3 74 59.5
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 4.2e-15 84.3 73 58.9
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 7.2e-15 83.6 73 63.0
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 7.2e-15 83.6 73 63.0
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 7.2e-15 83.6 72 59.7
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.6e-14 82.4 72 62.5
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.6e-14 82.4 70 54.3
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.1e-14 82.0 70 60.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 2.1e-14 82.0 70 60.0
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 2.1e-14 82.0 74 55.4
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.1e-14 82.0 72 63.9
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.7e-14 81.6 71 56.3
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 2.7e-14 81.6 74 59.5
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 3.6e-14 81.3 75 57.3
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 4.7e-14 80.9 71 56.3
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.0e-13 79.7 72 59.7
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.0e-13 79.7 71 54.9
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.4e-13 79.3 72 59.7
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.4e-13 79.3 72 59.7
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.4e-13 79.3 69 56.5
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.8e-13 79.0 70 58.6
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.8e-13 79.0 73 57.5
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.3e-13 78.6 70 60.0
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 5.2e-13 77.4 69 56.5
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 6.8e-13 77.0 72 58.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 6.8e-13 77.0 72 54.2
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.8e-13 76.6 74 54.1
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.8e-13 76.6 74 54.1
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.4e-12 74.3 56 66.1
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 5.7e-12 73.9 72 56.9
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 9.7e-12 73.2 70 57.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.8e-11 71.6 73 56.2
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 3.7e-11 71.2 67 55.2
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 4.8e-11 70.9 69 53.6
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 7.0e-10 67.0 77 51.9
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.6e-09 65.9 56 55.4
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.0e-09 65.5 60 55.0
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.7e-09 65.1 74 45.9
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.2e-08 62.0 74 44.6
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 3.2e-07 58.2 76 47.4
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 5.5e-07 57.4 76 40.8
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.2e-06 56.2 54 57.4


User provided reference genes

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