Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0950 Fragaria x ananassa HOM05D001049 ORTHO05D019129 1.1e-77 293.1 140 100.0
FAN11G1854 Fragaria x ananassa HOM05D001049 ORTHO05D019129 7.8e-55 217.2 134 79.9
FvH4_3g26990 Fragaria vesca HOM05D001049 ORTHO05D019129 5.4e-40 167.9 82 92.7
FAN01G0915 Fragaria x ananassa HOM05D001049 ORTHO05D019174 6.2e-28 127.9 65 89.2
FAN10G0721 Fragaria x ananassa HOM05D001049 ORTHO05D019174 6.2e-28 127.9 65 89.2
FAN05G1438 Fragaria x ananassa HOM05D001049 ORTHO05D005951 4.6e-23 111.7 88 64.8
FAN14G1155 Fragaria x ananassa HOM05D001049 ORTHO05D005951 4.6e-23 111.7 88 63.6
RcHm_v2.0_Chr2g0162931 Rosa chinensis HOM05D001049 ORTHO05D005951 7.9e-23 110.9 88 62.5
FvH4_5g10660 Fragaria vesca HOM05D001049 ORTHO05D019129 1.0e-22 110.5 58 93.1
FvH4_6g45220 Fragaria vesca HOM05D001049 ORTHO05D005951 1.0e-22 110.5 88 62.5
FAN02G0215 Fragaria x ananassa HOM05D001049 ORTHO05D005951 2.3e-22 109.4 88 63.6
MD09G1087200 Malus domestica HOM05D001049 ORTHO05D005951 1.1e-21 107.1 84 65.5
MD09G1086400 Malus domestica HOM05D001049 ORTHO05D005951 3.3e-21 105.5 88 62.5
Prupe.3G238300 Prunus persica HOM05D001049 ORTHO05D005951 1.6e-20 103.2 84 61.9
Lj4C194T12 Lonicera japonica HOM05D001049 ORTHO05D005951 5.8e-18 94.7 84 56.0
CSS0032537 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D005951 7.6e-18 94.4 89 53.9
Thecc.09G259800 Theobroma cacao HOM05D001049 ORTHO05D005951 8.4e-17 90.9 88 51.1
vmacro05566 Vaccinium macrocarpon HOM05D001049 ORTHO05D005951 1.9e-16 89.7 84 52.4
arahy.Tifrunner.gnm1.ann1.NBV3FR Arachis hypogaea HOM05D001049 ORTHO05D005951 2.5e-16 89.4 84 54.8
arahy.Tifrunner.gnm1.ann1.YPBB19 Arachis hypogaea HOM05D001049 ORTHO05D005951 2.5e-16 89.4 84 54.8
Gohir.D07G121000 Gossypium hirsutum HOM05D001049 ORTHO05D005951 3.2e-16 89.0 82 52.4
Lalb_Chr10g0091161 Lupinus albus HOM05D001049 ORTHO05D005951 3.2e-16 89.0 133 43.6
MD12G1122800 Malus domestica HOM05D001049 ORTHO05D005951 3.2e-16 89.0 90 53.3
Peaxi162Scf00814g00241 Petunia axillaris HOM05D001049 ORTHO05D005951 3.2e-16 89.0 83 55.4
Potri.004G101100 Populus trichocarpa HOM05D001049 ORTHO05D005951 3.2e-16 89.0 84 54.8
Manes.01G109200 Manihot esculenta HOM05D001049 ORTHO05D005951 4.2e-16 88.6 88 53.4
GSVIVG01031054001 Vitis vinifera HOM05D001049 ORTHO05D005951 4.2e-16 88.6 84 56.0
TWI74G0592 Tripterygium wilfordii HOM05D001049 ORTHO05D005951 5.5e-16 88.2 84 52.4
MD09G1086700 Malus domestica HOM05D001049 ORTHO05D005951 7.1e-16 87.8 80 60.0
Psat3g206240 Pisum sativum HOM05D001049 ORTHO05D005951 7.1e-16 87.8 84 53.6
Ciclev10000583m.g Citrus clementina HOM05D001049 ORTHO05D005951 1.2e-15 87.0 88 52.3
Thhalv10011322m.g Eutrema salsugineum HOM05D001049 ORTHO05D005951 1.2e-15 87.0 89 51.7
Ah.10g037600 Amaranthus hybridus HOM05D001049 ORTHO05D005951 1.6e-15 86.7 79 57.0
Hma1.2p1_0550F.1_g177330 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 1.6e-15 86.7 82 56.1
Hma1.2p1_3581F.1_g336840 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 1.6e-15 86.7 82 56.1
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 2.1e-15 86.3 79 55.7
CAN.G625.5 Capsicum annuum HOM05D001049 ORTHO05D005951 2.1e-15 86.3 81 53.1
Sp3g01340 Schrenkiella parvula HOM05D001049 ORTHO05D005951 2.1e-15 86.3 79 53.2
Gohir.A07G116600 Gossypium hirsutum HOM05D001049 ORTHO05D005951 2.7e-15 85.9 84 48.8
Gorai.001G130600 Gossypium raimondii HOM05D001049 ORTHO05D005951 2.7e-15 85.9 82 51.2
Ca_04065_v3 Cicer arietinum L. HOM05D001049 ORTHO05D005951 4.6e-15 85.1 82 52.4
Lj1g0028233 Lotus japonicus HOM05D001049 ORTHO05D005951 4.6e-15 85.1 84 52.4
Solyc02g085820.3 Solanum lycopersicum HOM05D001049 ORTHO05D005951 4.6e-15 85.1 81 53.1
Sopen02g030510 Solanum pennellii HOM05D001049 ORTHO05D005951 4.6e-15 85.1 81 53.1
AL3G11560 Arabidopsis lyrata HOM05D001049 ORTHO05D005951 6.0e-15 84.7 85 51.8
BcaC01g04542 Brassica carinata HOM05D001049 ORTHO05D005951 6.0e-15 84.7 80 53.8
FAN14G2476 Fragaria x ananassa HOM05D001049 ORTHO05D005951 6.0e-15 84.7 73 61.6
Sc11g0008260 Simmondsia chinensis HOM05D001049 ORTHO05D005951 6.0e-15 84.7 82 56.1
BcaC01g04452 Brassica carinata HOM05D001049 ORTHO05D005951 7.9e-15 84.3 80 55.0
C03p40010 Brassica napus HOM05D001049 ORTHO05D005951 7.9e-15 84.3 80 55.0
BolC3t16266H Brassica oleracea HOM05D001049 ORTHO05D005951 7.9e-15 84.3 80 55.0
Atru.chr7.1178 Acer truncatum HOM05D001049 ORTHO05D005951 1.0e-14 84.0 84 51.2
BraA03t12457Z Brassica rapa HOM05D001049 ORTHO05D005951 1.0e-14 84.0 80 53.8
Migut.L00308 Erythranthe guttata HOM05D001049 ORTHO05D005951 1.0e-14 84.0 85 51.8
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 1.0e-14 84.0 81 55.6
Lj6g0008823 Lotus japonicus HOM05D001049 ORTHO05D005951 1.3e-14 83.6 84 51.2
VMungo1383G0137 Vigna mungo HOM05D001049 ORTHO05D005951 1.8e-14 83.2 84 52.4
THA.LOC104820980 Tarenaya hassleriana HOM05D001049 ORTHO05D005951 2.3e-14 82.8 79 51.9
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 3.0e-14 82.4 85 50.6
PGSC0003DMG400012672 Solanum tuberosum HOM05D001049 ORTHO05D005951 3.9e-14 82.0 81 51.9
Aa31LG5G12810 Aethionema arabicum HOM05D001049 ORTHO05D005951 5.1e-14 81.6 79 51.9
Cc07_g08880 Coffea canephora HOM05D001049 ORTHO05D005951 5.1e-14 81.6 83 50.6
Sabra04G0079000 Salix brachista HOM05D001049 ORTHO05D005951 5.1e-14 81.6 85 51.8
AT3G02280 Arabidopsis thaliana HOM05D001049 ORTHO05D005951 8.7e-14 80.9 85 48.2
BolC5t33015H Brassica oleracea HOM05D001049 ORTHO05D005951 8.7e-14 80.9 84 53.6
Carub.0003s2478 Capsella rubella HOM05D001049 ORTHO05D005951 8.7e-14 80.9 85 49.4
AUR62008979 Chenopodium quinoa HOM05D001049 ORTHO05D005951 8.7e-14 80.9 89 50.6
BcaB06g26057 Brassica carinata HOM05D001049 ORTHO05D005951 1.1e-13 80.5 79 51.9
Eucgr.J01497 Eucalyptus grandis HOM05D001049 ORTHO05D005951 1.1e-13 80.5 84 51.2
EL10Ac2g04590 Beta vulgaris HOM05D001049 ORTHO05D005951 1.5e-13 80.1 79 55.7
CANSAT64G1724 Cannabis sativa HOM05D001049 ORTHO05D005951 1.5e-13 80.1 84 50.0
TPR.G9733 Trifolium pratense HOM05D001049 ORTHO05D005951 1.5e-13 80.1 84 50.0
Medtr1g102950 Medicago truncatula HOM05D001049 ORTHO05D005951 1.9e-13 79.7 82 52.4
Medtr7g406970 Medicago truncatula HOM05D001049 ORTHO05D005951 1.9e-13 79.7 82 52.4
SGA_v2.0_scaffold114G32024 Striga asiatica HOM05D001049 ORTHO05D005951 1.9e-13 79.7 85 51.8
Hund13726 Selenicereus undatus HOM05D001049 ORTHO05D005951 5.7e-13 78.2 101 44.6
COL.COLO4_25241 Corchorus olitorius HOM05D001049 ORTHO05D005951 7.4e-13 77.8 90 46.7
Duzib150G0039 Durio zibethinus HOM05D001049 ORTHO05D005951 9.6e-13 77.4 88 46.6
ECA236G0274 Erigeron canadensis HOM05D001049 ORTHO05D005951 1.6e-12 76.6 80 53.8
CDE05G0709 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 2.1e-12 76.3 105 41.9
Phvul.008G004800 Phaseolus vulgaris HOM05D001049 ORTHO05D005951 2.1e-12 76.3 80 52.5
Lsat_1_v5_gn_9_32960 Lactuca sativa HOM05D001049 ORTHO05D005951 2.8e-12 75.9 84 50.0
CiPaw.04G041100 Carya illinoinensis HOM05D001049 ORTHO05D005951 3.7e-12 75.5 84 48.8
SalBow5G3175 Salvia bowleyana HOM05D001049 ORTHO05D005951 3.7e-12 75.5 84 48.8
Medtr7g101180 Medicago truncatula HOM05D001049 ORTHO05D005951 4.8e-12 75.1 109 42.2
Nn3g17797 Nelumbo nucifera HOM05D001049 ORTHO05D005951 1.1e-11 73.9 86 47.7
Sed0012519 Sechium edule HOM05D001049 ORTHO05D005951 1.1e-11 73.9 84 42.9
TAR629G0236 Trochodendron aralioides HOM05D001049 ORTHO05D005951 1.1e-11 73.9 84 48.8
TAR183G0004 Trochodendron aralioides HOM05D001049 ORTHO05D005951 1.8e-11 73.2 85 43.5
FvH4_7g05330 Fragaria vesca HOM05D001049 ORTHO05D019129 3.1e-11 72.4 99 46.5
Lj1g0012839 Lotus japonicus HOM05D001049 ORTHO05D005951 5.3e-11 71.6 75 50.7
HanXRQChr12g0376471 Helianthus annuus HOM05D001049 ORTHO05D005951 6.9e-11 71.2 84 46.4
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 1.2e-10 70.5 83 43.4
CDE05G2905 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 2.0e-10 69.7 84 45.2
Aqoxy3G03945 Aquilegia oxysepala HOM05D001049 ORTHO05D005951 2.6e-10 69.3 88 42.0
PSO566G0159 Papaver somniferum HOM05D001049 ORTHO05D005951 3.4e-10 68.9 84 42.9
PSO782G4668 Papaver somniferum HOM05D001049 ORTHO05D005951 1.0e-09 67.4 84 41.7
Zm00001eb154050 Zea mays HOM05D001049 ORTHO05D005951 1.0e-09 67.4 84 42.9
FAN03G1095 Fragaria x ananassa HOM05D001049 ORTHO05D019174 2.9e-09 65.9 48 70.8
CsaV3_4G004300 Cucumis sativus L. HOM05D001049 ORTHO05D005951 6.5e-09 64.7 88 38.6
Nitab4.5_0005199g0010 Nicotiana tabacum HOM05D001049 ORTHO05D005951 2.5e-08 62.8 80 43.8
PGR042G0664 Punica granatum HOM05D001049 ORTHO05D005951 3.2e-08 62.4 81 42.0
AUR62014524 Chenopodium quinoa HOM05D001049 ORTHO05D005951 4.2e-08 62.0 55 56.4
Lj6g0018247 Lotus japonicus HOM05D001049 ORTHO05D005951 1.6e-07 60.1 39 71.8
BcaC05g28235 Brassica carinata HOM05D001049 ORTHO05D005951 2.7e-07 59.3 77 48.1
C05p42860 Brassica napus HOM05D001049 ORTHO05D005951 2.7e-07 59.3 77 48.1
Dinv34836 Davidia involucrata HOM05D001049 ORTHO05D005951 2.7e-07 59.3 36 77.8
DCAR_029529 Daucus carota HOM05D001049 ORTHO05D005951 3.6e-07 58.9 37 73.0
Nitab4.5_0001569g0100 Nicotiana tabacum HOM05D001049 ORTHO05D005951 3.6e-07 58.9 80 42.5
Pp3c9_18000 Physcomitrium patens HOM05D001049 ORTHO05D005951 1.0e-06 57.4 36 72.2
HPP92_005481 Vanilla planifolia HOM05D001049 ORTHO05D005951 1.0e-06 57.4 78 39.7
CDE05G2137 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 1.3e-06 57.0 40 67.5
FAN28G0412 Fragaria x ananassa HOM05D018859 ORTHO05D019129 1.3e-06 57.0 30 86.7
SHI03729 Sapria himalayana HOM05D001049 ORTHO05D019129 1.8e-06 56.6 31 83.9
DCAR_019602 Daucus carota HOM05D001049 ORTHO05D005951 3.9e-06 55.5 82 39.0
Actinidia15878 Actinidia chinensis HOM05D001049 ORTHO05D005951 5.1e-06 55.1 31 80.6
FvH4_1g29770 Fragaria vesca HOM05D018859 ORTHO05D019129 6.7e-06 54.7 30 83.3
GSVIVG01014385001 Vitis vinifera HOM05D001049 ORTHO05D005951 8.7e-06 54.3 31 80.6


User provided reference genes

Program Settings