Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-109 399.1 203 100.0
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 3.9e-71 271.9 203 74.9
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.3e-70 268.5 203 74.4
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.9e-66 255.0 203 70.9
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.3e-63 246.1 200 70.5
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 3.4e-51 205.7 196 64.3
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.4e-49 199.5 203 57.6
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.2e-49 199.1 203 58.1
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.1e-48 196.4 201 58.7
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.0e-47 194.1 201 59.2
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 8.7e-47 191.0 203 57.1
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.9e-46 189.9 204 57.4
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.9e-46 189.9 204 57.4
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 2.5e-46 189.5 201 58.7
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 8.1e-45 184.5 191 57.1
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.4e-44 183.7 202 56.9
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 1.8e-44 183.3 203 56.2
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 2.4e-44 183.0 105 83.8
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.5e-43 180.3 203 54.2
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.0e-43 179.9 200 56.5
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.0e-43 179.9 203 54.2
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.4e-43 179.1 199 52.3
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.4e-43 179.1 199 52.3
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 7.6e-43 177.9 201 55.2
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 7.6e-43 177.9 105 81.0
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 9.9e-43 177.6 203 53.7
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 9.9e-43 177.6 203 55.2
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.7e-42 176.8 199 51.8
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 2.9e-42 176.0 168 56.5
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 4.9e-42 175.3 107 80.4
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 8.4e-42 174.5 105 81.0
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.9e-41 173.3 105 79.0
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.9e-41 173.3 205 55.6
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.4e-41 172.9 188 53.2
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.5e-41 171.8 200 51.5
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 9.3e-41 171.0 199 52.8
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.6e-40 170.2 200 55.5
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.7e-40 169.5 200 53.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 3.5e-40 169.1 198 53.0
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 4.6e-40 168.7 107 76.6
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.8e-39 166.8 105 72.4
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.8e-39 166.8 189 50.8
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 3.0e-39 166.0 188 50.5
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 3.0e-39 166.0 190 52.6
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 3.0e-39 166.0 197 51.3
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 3.9e-39 165.6 189 50.8
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 5.1e-39 165.2 204 52.5
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 5.1e-39 165.2 106 74.5
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 6.7e-39 164.9 203 49.3
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 6.7e-39 164.9 105 77.1
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 6.7e-39 164.9 118 72.0
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 8.7e-39 164.5 191 52.4
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 8.7e-39 164.5 106 74.5
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 1.1e-38 164.1 200 49.5
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.1e-38 164.1 188 50.0
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.1e-38 164.1 180 52.8
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.1e-38 164.1 202 51.5
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.1e-38 164.1 105 76.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.5e-38 163.7 190 50.5
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.5e-38 163.7 191 51.3
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.5e-38 162.9 189 50.3
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.5e-38 162.9 105 75.2
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 2.5e-38 162.9 193 49.7
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 3.3e-38 162.5 203 50.7
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.3e-38 162.5 189 49.7
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.3e-38 162.5 189 49.7
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.3e-38 162.2 189 48.7
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 5.6e-38 161.8 201 53.2
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 5.6e-38 161.8 105 75.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.6e-38 161.8 207 49.8
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 5.6e-38 161.8 105 73.3
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 9.6e-38 161.0 105 74.3
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.3e-37 160.6 205 52.2
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.3e-37 160.6 104 76.0
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.6e-37 160.2 197 48.7
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.1e-37 159.8 106 75.5
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 2.8e-37 159.5 188 48.9
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 2.8e-37 159.5 188 48.9
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.8e-37 159.5 103 74.8
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 2.8e-37 159.5 105 69.5
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 3.7e-37 159.1 188 48.4
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 3.7e-37 159.1 203 49.3
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 3.7e-37 159.1 192 51.0
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.8e-37 158.7 196 51.5
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 6.2e-37 158.3 188 48.4
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 6.2e-37 158.3 195 50.3
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 6.2e-37 158.3 197 48.7
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 6.2e-37 158.3 103 74.8
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 8.1e-37 157.9 106 74.5
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 8.1e-37 157.9 204 49.5
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 8.1e-37 157.9 209 50.7
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 8.1e-37 157.9 105 71.4
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.1e-36 157.5 104 73.1
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.1e-36 157.5 105 71.4
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.4e-36 157.1 103 73.8
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.8e-36 156.8 107 68.2
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.8e-36 156.8 180 51.1
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 2.4e-36 156.4 197 48.7
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.1e-36 156.0 201 52.2
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 3.1e-36 156.0 104 72.1
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 3.1e-36 156.0 104 70.2
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 5.3e-36 155.2 196 49.0
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 5.3e-36 155.2 206 49.0
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 5.3e-36 155.2 103 70.9
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 6.9e-36 154.8 204 48.0
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 6.9e-36 154.8 197 49.2
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.2e-35 154.1 105 68.6
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.5e-35 153.7 103 69.9
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.5e-35 153.7 188 47.9
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 2.0e-35 153.3 197 49.2
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 3.4e-35 152.5 197 50.3
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 4.5e-35 152.1 196 50.0
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 4.5e-35 152.1 104 72.1
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.8e-35 151.8 197 48.7
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 5.8e-35 151.8 196 48.5
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 5.8e-35 151.8 196 49.0
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 7.6e-35 151.4 198 49.5
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 7.6e-35 151.4 197 47.2
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.7e-34 150.2 196 49.0
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.7e-34 150.2 105 69.5
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 4.9e-34 148.7 229 46.7
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 6.5e-34 148.3 105 68.6
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.4e-33 147.1 107 65.4
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 2.5e-33 146.4 106 69.8
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.5e-33 145.2 209 48.3
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 9.3e-33 144.4 105 64.8
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 4.6e-32 142.1 94 71.3
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 6.0e-32 141.7 199 46.7
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 6.0e-32 141.7 201 45.3
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 3.9e-31 139.0 95 70.5
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 6.7e-31 138.3 105 62.9
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 6.7e-31 138.3 95 68.4
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 1.6e-29 133.7 94 67.0
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.6e-29 133.7 94 69.1
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 3.7e-29 132.5 153 51.0
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 2.4e-28 129.8 94 64.9
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.2e-27 127.5 234 41.0
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 4.5e-27 125.6 157 46.5
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 1.3e-26 124.0 165 47.9
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 6.5e-26 121.7 77 77.9
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 6.5e-26 121.7 107 61.7
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 8.4e-26 121.3 105 57.1
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.2e-24 117.5 189 45.0
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.0e-23 112.8 180 42.2
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 5.1e-23 112.1 115 53.9
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.9e-22 110.2 56 91.1
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.9e-22 110.2 183 43.2
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.5e-22 109.8 197 41.1
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.5e-22 109.8 197 41.1
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 4.3e-22 109.0 68 72.1
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.0e-18 97.8 54 87.0
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.7e-16 89.7 75 65.3
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.0e-15 87.8 52 78.8
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 5.1e-15 85.5 76 53.9
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 6.7e-15 85.1 76 53.9
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 7.4e-14 81.6 76 52.6
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.2e-13 80.1 107 40.2
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 6.9e-12 75.1 46 73.9
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.7e-10 70.5 129 43.4
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.2e-10 70.1 35 88.6
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.8e-10 69.3 174 39.7
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 8.5e-10 68.2 56 57.1
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 3.6e-08 62.8 113 35.4


User provided reference genes

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