Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0091 Fragaria x ananassa HOM05D002190 ORTHO05D016291 4.8e-70 267.7 133 100.0
FAN22G1091 Fragaria x ananassa HOM05D002190 ORTHO05D016291 1.8e-29 132.9 71 97.2
FAN10G3799 Fragaria x ananassa HOM05D002190 ORTHO05D016291 5.3e-29 131.3 70 97.1
FAN06G0134 Fragaria x ananassa HOM05D002190 ORTHO05D016291 1.2e-28 130.2 70 97.1
FAN21G1229 Fragaria x ananassa HOM05D002190 ORTHO05D016291 1.2e-28 130.2 70 95.7
FAN19G0578 Fragaria x ananassa HOM05D002190 ORTHO05D016291 6.8e-24 114.4 65 92.3
FAN09G3941 Fragaria x ananassa HOM05D010053 ORTHO05D016291 5.4e-21 104.8 60 91.7
FAN16G1951 Fragaria x ananassa HOM05D002190 ORTHO05D016291 1.3e-19 100.1 54 94.4
FvH4_5g13181 Fragaria vesca HOM05D002190 ORTHO05D016291 9.5e-18 94.0 56 87.5
FAN27G3116 Fragaria x ananassa HOM05D002190 ORTHO05D205247 1.6e-12 76.6 37 100.0
FAN04G0405 Fragaria x ananassa HOM05D002190 ORTHO05D000455 2.7e-12 75.9 43 90.7
FAN14G3046 Fragaria x ananassa HOM05D007603 ORTHO05D016291 6.1e-09 64.7 35 91.4
FAN18G3407 Fragaria x ananassa HOM05D007222 ORTHO05D046396 1.4e-08 63.5 34 94.1
FvH4_6g36980 Fragaria vesca HOM05D002190 ORTHO05D002492 1.2e-07 60.5 39 82.1
FAN02G3002 Fragaria x ananassa HOM05D002190 ORTHO05D002492 1.2e-07 60.5 39 82.1
FAN05G4735 Fragaria x ananassa HOM05D002190 ORTHO05D002492 1.2e-07 60.5 39 82.1
FAN14G5908 Fragaria x ananassa HOM05D002190 ORTHO05D002492 1.2e-07 60.5 39 82.1
Psat2g006200 Pisum sativum HOM05D002190 ORTHO05D002492 2.6e-07 59.3 45 64.4
Nitab4.5_0015993g0010 Nicotiana tabacum HOM05D002190 ORTHO05D002492 3.4e-07 58.9 39 76.9
Oeu013317.1 Olea europaea HOM05D002190 ORTHO05D002492 3.4e-07 58.9 39 76.9
Oeu014244.3 Olea europaea HOM05D002190 ORTHO05D002492 3.4e-07 58.9 39 76.9
COL.COLO4_38036 Corchorus olitorius HOM05D002190 ORTHO05D002492 5.8e-07 58.2 39 76.9
MSTRG.2820 Avicennia marina HOM05D002190 ORTHO05D002492 7.5e-07 57.8 43 69.8
Cc07_g07050 Coffea canephora HOM05D002190 ORTHO05D002492 7.5e-07 57.8 39 74.4
DCAR_000378 Daucus carota HOM05D002190 ORTHO05D002492 7.5e-07 57.8 39 74.4
Duzib187G0203 Durio zibethinus HOM05D002190 ORTHO05D002492 7.5e-07 57.8 39 74.4
Duzib264G1105 Durio zibethinus HOM05D002190 ORTHO05D002492 7.5e-07 57.8 39 74.4
FAN03G3087 Fragaria x ananassa HOM05D010053 ORTHO05D016291 7.5e-07 57.8 32 90.6
Peaxi162Scf00548g00066 Petunia axillaris HOM05D002190 ORTHO05D002492 7.5e-07 57.8 39 74.4
Thecc.05G194000 Theobroma cacao HOM05D002190 ORTHO05D002492 7.5e-07 57.8 39 76.9
MSTRG.15354 Avicennia marina HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
CANSAT01G2791 Cannabis sativa HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
Ca_00272_v3 Cicer arietinum L. HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
Gohir.A11G048500 Gossypium hirsutum HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
Gohir.A11G215200 Gossypium hirsutum HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
Gohir.D11G052100 Gossypium hirsutum HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
Gorai.007G223100 Gossypium raimondii HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
Nitab4.5_0000651g0270 Nicotiana tabacum HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
Nitab4.5_0001417g0070 Nicotiana tabacum HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
Nitab4.5_0024089g0010 Nicotiana tabacum HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
RcHm_v2.0_Chr2g0107961 Rosa chinensis HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
RcHm_v2.0_Chr2g0149501 Rosa chinensis HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
PGSC0003DMG400021420 Solanum tuberosum HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 74.4
TWI09G1241 Tripterygium wilfordii HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 76.9
TWI73G0037 Tripterygium wilfordii HOM05D002190 ORTHO05D002492 9.8e-07 57.4 39 76.9
Actinidia36433 Actinidia chinensis HOM05D002190 ORTHO05D002492 1.3e-06 57.0 39 71.8
Eucgr.I00709 Eucalyptus grandis HOM05D002190 ORTHO05D002492 1.3e-06 57.0 39 74.4
Duzib147G0543 Durio zibethinus HOM05D002190 ORTHO05D002492 1.7e-06 56.6 39 71.8
SGA_v2.0_scaffold13G06410 Striga asiatica HOM05D002190 ORTHO05D002492 1.7e-06 56.6 39 71.8
CiPaw.01G005000 Carya illinoinensis HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
ClCG02G012650 Citrullus lanatus HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
COL.COLO4_11569 Corchorus olitorius HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
MELO3C020906.2 Cucumis melo HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
ECA246G0796 Erigeron canadensis HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Eucgr.I00708 Eucalyptus grandis HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
FvH4_1g17640 Fragaria vesca HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
FAN19G0063 Fragaria x ananassa HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
FAN19G1525 Fragaria x ananassa HOM05D002190 ORTHO05D199808 2.2e-06 56.2 48 62.5
FAN23G0272 Fragaria x ananassa HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
FAN23G2066 Fragaria x ananassa HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
FAN26G3269 Fragaria x ananassa HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
FAN28G0126 Fragaria x ananassa HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Gohir.A02G151900 Gossypium hirsutum HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Gohir.A10G089700 Gossypium hirsutum HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Gohir.D03G028500 Gossypium hirsutum HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Gohir.D10G098400 Gossypium hirsutum HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Gohir.D11G208100 Gossypium hirsutum HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Gorai.003G030000 Gossypium raimondii HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Gorai.011G108100 Gossypium raimondii HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Lj4P162T69 Lonicera japonica HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Lj7P96T38 Lonicera japonica HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
MD06G1158400 Malus domestica HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Medtr2g012450 Medicago truncatula HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
Sabra07G0048100 Salix brachista HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 71.8
SGA_v2.0_scaffold15G07452 Striga asiatica HOM05D002190 ORTHO05D002492 2.2e-06 56.2 39 74.4
Atru.chr3.139 Acer truncatum HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 74.4
arahy.Tifrunner.gnm1.ann1.QE9DNI Arachis hypogaea HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 69.2
CiPaw.02G002700 Carya illinoinensis HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 69.2
CDE05G1504 Ceratophyllum demersum HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 71.8
Ca_24697_v3 Cicer arietinum L. HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 71.8
Ciclev10026719m.g Citrus clementina HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 74.4
Migut.H00351 Erythranthe guttata HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 71.8
Migut.L00214 Erythranthe guttata HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 71.8
Hma1.2p1_0808F.1_g221590 Hydrangea macrophylla HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 71.8
Manes.12G113600 Manihot esculenta HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 74.4
Manes.13G112100 Manihot esculenta HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 74.4
Rhsim08G0093900 Rhododendron simsii HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 71.8
PGSC0003DMG400009063 Solanum tuberosum HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 71.8
TWI63G1145 Tripterygium wilfordii HOM05D002190 ORTHO05D002492 2.9e-06 55.8 39 74.4
EL10Ac6g15625 Beta vulgaris HOM05D002190 ORTHO05D002492 3.7e-06 55.5 40 65.0
CAN.G1075.31 Capsicum annuum HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
CAN.G775.10 Capsicum annuum HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 74.4
ClCG01G017590 Citrullus lanatus HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 66.7
MELO3C007635.2 Cucumis melo HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 66.7
CsaV3_6G044130 Cucumis sativus L. HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 66.7
MBI09_g36358_MAGBIO Magnolia biondii HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
MD02G1185200 Malus domestica HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
Potri.007G055900 Populus trichocarpa HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 69.2
Prupe.3G002900 Prunus persica HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 69.2
PGR004G1686 Punica granatum HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
Sed0017588 Sechium edule HOM05D002190 ORTHO05D002492 3.7e-06 55.5 40 65.0
Sc07g0000550 Simmondsia chinensis HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
Solyc02g092430.1 Solanum lycopersicum HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
Sopen02g036980 Solanum pennellii HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
TAR371G0847 Trochodendron aralioides HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
TAR371G1141 Trochodendron aralioides HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
TAR629G2988 Trochodendron aralioides HOM05D002190 ORTHO05D002492 3.7e-06 55.5 39 71.8
Cpa.g.c34170 Carica papaya HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 71.8
AUR62004002 Chenopodium quinoa HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
AUR62040244 Chenopodium quinoa HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
Dinv04053 Davidia involucrata HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
Dinv26925 Davidia involucrata HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 71.8
Potri.005G082600 Populus trichocarpa HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 71.8
Sabra05G0067600 Salix brachista HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 71.8
SalBow5G0710 Salvia bowleyana HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
SalBow5G4771 Salvia bowleyana HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
Sed0027797 Sechium edule HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 66.7
THA.LOC104804208 Tarenaya hassleriana HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 71.8
THA.LOC104807631 Tarenaya hassleriana HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 71.8
THA.LOC104819264 Tarenaya hassleriana HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
THA.LOC104819880 Tarenaya hassleriana HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 71.8
THA.LOC104821199 Tarenaya hassleriana HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
THA.LOC104821221 Tarenaya hassleriana HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
TWI38G0255 Tripterygium wilfordii HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 71.8
unitig_32.g10775 Utricularia gibba HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
unitig_748.g8388 Utricularia gibba HOM05D002190 ORTHO05D002492 4.9e-06 55.1 39 69.2
arahy.Tifrunner.gnm1.ann1.K0XUKT Arachis hypogaea HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 66.7
MSTRG.23674 Avicennia marina HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 71.8
Cfa004127 Carpinus fangiana HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 71.8
Ca_06419_v3 Cicer arietinum L. HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Haze_15288 Corylus avellana HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 71.8
Dinv34791 Davidia involucrata HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 71.8
ECA238G1417 Erigeron canadensis HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 66.7
Glyma.01G193800 Glycine max HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Glyma.11G048100 Glycine max HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
HanXRQChr07g0193791 Helianthus annuus HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
HanXRQChr12g0375031 Helianthus annuus HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Medtr5g015570 Medicago truncatula HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Nn4g23970 Nelumbo nucifera HOM05D002190 ORTHO05D002492 6.4e-06 54.7 45 60.0
Phvul.002G011200 Phaseolus vulgaris HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Psat1g207840 Pisum sativum HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Psat2g006280 Pisum sativum HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Psat2g171400 Pisum sativum HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Potri.007G085200 Populus trichocarpa HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Sed0012850 Sechium edule HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 64.1
VMungo1215G1338 Vigna mungo HOM05D002190 ORTHO05D002492 6.4e-06 54.7 39 69.2
Ah.02g125430 Amaranthus hybridus HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 66.7
Ah.03g140510 Amaranthus hybridus HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 66.7
arahy.Tifrunner.gnm1.ann1.HH0JGC Arachis hypogaea HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 8.3e-06 54.3 28 92.9
Gohir.A08G226200 Gossypium hirsutum HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
HanXRQChr03g0064321 Helianthus annuus HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
Lj2g0004672 Lotus japonicus HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
Lalb_Chr15g0090051 Lupinus albus HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
QL03p006782 Quercus lobata HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
Rhsim10G0099800 Rhododendron simsii HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
Sabra07G0070500 Salix brachista HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
SalBow3G3229 Salvia bowleyana HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
Sp2g29140 Schrenkiella parvula HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 66.7
Solyc02g064670.1 Solanum lycopersicum HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 71.8
Sopen02g014760 Solanum pennellii HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 71.8
PGSC0003DMG400035337 Solanum tuberosum HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 71.8
TPR.G34853 Trifolium pratense HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 66.7
TAR381G0356 Trochodendron aralioides HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
TAR568G0002 Trochodendron aralioides HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 69.2
GSVIVG01000114001 Vitis vinifera HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 66.7
GSVIVG01000121001 Vitis vinifera HOM05D002190 ORTHO05D002492 8.3e-06 54.3 39 66.7


User provided reference genes

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