Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-166 589.3 291 100.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.1e-149 531.2 267 98.1
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.1e-148 530.0 267 98.1
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.3e-148 528.5 267 97.4
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.2e-147 524.2 267 96.6
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.1e-146 521.9 267 97.0
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 4.0e-146 521.5 267 96.3
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.6e-142 509.6 266 93.6
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.0e-141 506.9 267 92.1
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 2.3e-141 505.8 268 91.0
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 8.7e-141 503.8 267 91.0
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.5e-140 502.3 267 91.0
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 5.6e-140 501.1 266 90.6
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 7.3e-140 500.7 266 92.1
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 7.3e-140 500.7 266 90.2
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 7.3e-140 500.7 267 89.9
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.3e-139 500.0 266 91.4
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.3e-139 500.0 266 91.4
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.3e-139 500.0 266 90.2
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.6e-139 499.6 266 91.0
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 2.1e-139 499.2 266 91.0
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.1e-139 499.2 266 89.8
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 3.6e-139 498.4 267 90.6
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 3.6e-139 498.4 267 90.3
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 3.6e-139 498.4 266 89.5
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 3.6e-139 498.4 267 89.1
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 4.8e-139 498.0 267 89.1
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 4.8e-139 498.0 266 91.0
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 4.8e-139 498.0 266 89.5
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 6.2e-139 497.7 267 89.1
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 6.2e-139 497.7 266 90.6
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 8.1e-139 497.3 267 88.4
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 8.1e-139 497.3 266 90.6
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-138 496.9 267 88.4
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.4e-138 496.5 267 88.4
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.4e-138 495.7 267 88.0
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 3.1e-138 495.4 267 88.4
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 3.1e-138 495.4 266 90.6
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 3.1e-138 495.4 266 90.6
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 3.1e-138 495.4 267 89.9
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 4.0e-138 495.0 267 88.0
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 4.0e-138 495.0 267 90.3
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 5.3e-138 494.6 266 89.8
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 6.9e-138 494.2 266 90.2
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 9.0e-138 493.8 269 88.1
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 9.0e-138 493.8 267 88.4
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 9.0e-138 493.8 267 88.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 9.0e-138 493.8 267 89.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 9.0e-138 493.8 267 90.3
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.5e-137 493.0 267 88.0
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.5e-137 493.0 267 88.4
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.5e-137 493.0 267 90.3
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.0e-137 492.7 266 88.7
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 5.8e-137 491.1 267 89.5
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 5.8e-137 491.1 266 88.3
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 5.8e-137 491.1 267 89.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 5.8e-137 491.1 267 89.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 7.6e-137 490.7 269 86.6
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 7.6e-137 490.7 241 99.6
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.6e-137 490.7 266 89.8
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 7.6e-137 490.7 267 88.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 9.9e-137 490.3 267 89.5
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.3e-136 490.0 275 85.8
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.3e-136 490.0 268 88.8
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.3e-136 490.0 267 89.5
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.3e-136 490.0 266 88.7
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.2e-136 489.2 266 89.8
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 2.2e-136 489.2 267 89.5
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 2.9e-136 488.8 267 88.8
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.9e-136 488.8 268 87.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.8e-136 488.4 269 86.2
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 3.8e-136 488.4 266 89.1
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.8e-136 488.4 266 89.5
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.8e-136 488.4 266 88.7
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 4.9e-136 488.0 266 88.7
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.9e-136 488.0 269 85.5
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 4.9e-136 488.0 266 89.1
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 8.4e-136 487.3 272 86.8
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 8.4e-136 487.3 269 87.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 8.4e-136 487.3 268 88.8
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-135 486.9 266 89.5
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-135 486.9 266 88.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.1e-135 486.9 266 88.7
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.1e-135 486.9 268 88.1
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.9e-135 486.1 266 87.6
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.4e-135 485.7 266 88.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 2.4e-135 485.7 269 87.0
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.4e-135 485.7 266 88.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 3.2e-135 485.3 266 87.6
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.2e-135 485.0 267 87.3
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 7.1e-135 484.2 266 87.6
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 7.1e-135 484.2 281 84.3
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 9.3e-135 483.8 266 88.0
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.2e-134 483.4 266 87.2
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.6e-134 483.0 268 86.2
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 2.7e-134 482.3 266 88.0
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 4.6e-134 481.5 265 87.9
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.6e-134 481.5 266 88.0
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 4.6e-134 481.5 278 85.3
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.0e-133 480.3 266 87.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.5e-132 475.7 265 86.4
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 4.8e-131 471.5 265 85.7
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 6.2e-131 471.1 266 85.7
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 5.8e-129 464.5 268 84.7
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 5.8e-129 464.5 270 84.4
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 3.8e-128 461.8 267 84.3
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.5e-127 459.1 241 91.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 6.0e-126 454.5 265 81.9
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.8e-125 453.0 243 88.5
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.7e-125 450.7 265 83.0
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.5e-124 449.9 265 81.5
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.5e-124 449.9 281 82.9
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.6e-123 446.4 267 80.5
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.6e-121 439.1 235 89.4
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.6e-121 439.1 241 87.1
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 3.8e-120 435.3 267 80.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.1e-119 433.7 241 86.7
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 4.6e-118 428.3 267 77.5
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 3.4e-113 412.1 269 73.6
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 9.4e-111 404.1 281 74.7
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.6e-110 401.7 265 75.8
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 6.7e-109 397.9 217 88.0
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 3.1e-106 389.0 218 85.8
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.4e-101 373.6 220 80.9
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 5.1e-101 371.7 205 87.3
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.2e-96 356.3 219 78.5
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.6e-94 349.0 183 95.1
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 4.7e-94 348.6 266 63.5
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 5.3e-90 335.1 280 66.8
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.0e-89 333.2 269 59.9
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.1e-87 327.4 178 89.3
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.8e-83 312.8 248 66.1
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.8e-75 286.2 272 59.6
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.7e-72 276.9 145 92.4
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 5.0e-72 275.4 191 73.8
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-71 273.5 145 93.1
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 9.8e-68 261.2 227 63.9
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 5.2e-61 238.8 205 62.0
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 8.3e-59 231.5 261 51.0
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.7e-43 179.5 151 64.2
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 8.1e-38 161.8 232 43.5
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.1e-34 151.4 77 93.5
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 7.1e-34 148.7 76 92.1
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.1e-31 141.4 75 88.0
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 6.2e-30 135.6 76 84.2
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 3.8e-27 126.3 79 74.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 6.4e-27 125.6 85 71.8
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 6.9e-21 105.5 51 94.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 1.4e-18 97.8 93 57.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.9e-11 73.6 49 75.5
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.9e-11 73.6 36 100.0
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.5e-11 72.4 36 97.2
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 1.1e-10 71.6 36 86.1
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.6e-09 67.8 48 68.8
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 2.1e-09 67.4 36 91.7
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 3.5e-09 66.6 51 64.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 5.7e-07 59.3 30 80.0
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 1.3e-06 58.2 38 76.3


User provided reference genes

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