Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 0.0e+00 1196.8 595 100.0
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 0.0e+00 1172.5 595 97.6
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 0.0e+00 1130.5 595 95.3
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 0.0e+00 1127.9 595 95.0
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 0.0e+00 1112.1 595 91.6
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 2.8e-287 991.5 595 81.3
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 2.5e-280 968.4 595 79.5
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 4.3e-272 941.0 594 76.6
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 4.8e-271 937.6 595 77.0
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 6.3e-263 910.6 597 73.7
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.4e-262 908.7 595 74.6
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 9.1e-262 906.7 595 74.1
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 3.5e-261 904.8 597 73.5
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 1.0e-260 903.3 595 73.6
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 3.2e-259 898.3 595 73.1
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 4.2e-259 897.9 598 73.7
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 7.2e-259 897.1 595 73.1
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 1.2e-258 896.3 599 74.0
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 2.7e-258 895.2 595 73.8
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 6.7e-257 890.6 595 72.4
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.1e-256 889.8 595 73.3
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 3.3e-256 888.3 595 73.3
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 1.4e-254 882.9 595 71.8
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 1.4e-254 882.9 596 73.0
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 2.4e-254 882.1 595 72.3
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 3.8e-252 874.8 595 71.1
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 1.5e-251 872.8 595 71.6
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 8.0e-250 867.1 601 71.7
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 1.4e-246 856.3 597 70.4
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 1.8e-246 855.9 596 71.1
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 5.3e-246 854.4 634 67.0
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 2.0e-245 852.4 632 67.7
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 2.7e-245 852.0 632 68.4
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 4.5e-245 851.3 598 70.2
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 3.8e-244 848.2 599 69.3
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 1.1e-243 846.7 596 69.5
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.9e-243 845.9 598 69.1
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 1.6e-242 842.8 582 71.8
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.5e-240 836.3 607 68.7
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 1.3e-239 833.2 671 63.6
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.1e-238 830.1 594 70.0
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 5.4e-238 827.8 594 67.5
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 7.0e-238 827.4 615 68.0
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 7.7e-237 823.9 556 73.9
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 1.7e-236 822.8 555 73.0
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 3.8e-236 821.6 595 67.2
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 3.8e-236 821.6 595 67.7
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 1.1e-235 820.1 595 68.1
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 4.2e-235 818.1 597 68.2
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 1.4e-233 813.1 595 67.6
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 2.6e-232 808.9 592 67.9
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 3.4e-232 808.5 595 67.1
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 6.3e-231 804.3 597 67.2
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 9.2e-230 800.4 598 67.4
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 1.1e-227 793.5 571 67.8
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 4.3e-227 791.6 599 66.8
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 9.5e-227 790.4 648 63.6
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 9.8e-224 780.4 597 64.8
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 4.9e-223 778.1 595 65.4
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 7.8e-221 770.8 599 65.9
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 1.7e-220 769.6 596 63.1
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 7.3e-219 764.2 596 62.8
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 3.6e-218 761.9 598 64.0
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 8.0e-218 760.8 599 63.8
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 2.3e-217 759.2 647 61.8
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 6.8e-217 757.7 597 65.0
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 7.5e-216 754.2 597 64.5
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 1.1e-214 750.4 548 68.4
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 2.7e-213 745.7 595 64.2
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 1.0e-212 743.8 597 62.0
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.0e-212 743.8 597 62.5
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.7e-212 743.0 539 69.2
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 1.5e-211 740.0 599 62.3
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.2e-210 736.9 534 67.8
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 2.8e-210 735.7 597 62.0
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 1.2e-208 730.3 599 62.4
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 3.4e-208 728.8 599 61.9
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 7.6e-208 727.6 520 70.0
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.3e-207 726.9 598 61.9
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 2.2e-207 726.1 598 61.9
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 1.9e-206 723.0 597 62.1
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 1.9e-206 723.0 576 63.5
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 2.4e-206 722.6 530 68.7
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 1.7e-204 716.5 587 62.0
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 5.1e-204 714.9 596 60.9
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 8.6e-204 714.1 596 59.4
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 5.6e-203 711.4 601 62.6
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 2.1e-202 709.5 608 62.3
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 5.8e-200 701.4 601 57.9
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 7.6e-200 701.0 512 68.6
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 4.2e-198 695.3 560 62.3
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 5.4e-198 694.9 575 62.4
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 7.1e-198 694.5 686 54.7
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 7.3e-195 684.5 487 69.2
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 3.8e-191 672.2 617 56.7
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.3e-159 567.4 533 56.1
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 5.7e-147 525.4 380 66.8
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 3.5e-136 489.6 521 54.5
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 7.7e-136 488.4 609 46.3
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.1e-133 480.3 393 61.1
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 1.1e-126 458.0 461 52.7
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 2.5e-118 430.3 601 41.3
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 5.1e-95 352.8 245 69.4
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 6.4e-82 309.3 205 73.7
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 1.3e-77 295.0 250 56.4
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 2.4e-73 280.8 289 51.6
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-70 270.0 620 32.1
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.1e-60 237.3 167 66.5
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 3.6e-40 170.6 159 57.9
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.3e-36 156.8 151 55.0
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 2.3e-31 141.4 119 55.5
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 2.2e-29 134.8 110 65.5
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 1.1e-25 122.5 69 78.3
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.4e-23 115.5 81 64.2
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 3.6e-16 90.9 83 53.0
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 1.8e-15 88.6 60 75.0
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 2.0e-14 85.1 316 24.7
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.4e-12 79.0 54 64.8
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 7.0e-12 76.6 369 26.8
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 3.5e-11 74.3 45 71.1
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 2.9e-10 71.2 375 25.9
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 2.9e-10 71.2 428 24.5
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 1.1e-09 69.3 490 24.7
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.5e-09 68.9 364 26.1
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.9e-09 68.6 47 68.1
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 2.5e-09 68.2 406 24.4
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 3.2e-09 67.8 442 24.7
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 3.2e-09 67.8 364 25.5
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 4.2e-09 67.4 361 25.2
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 4.2e-09 67.4 387 24.8
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 4.2e-09 67.4 455 25.3
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 4.2e-09 67.4 431 25.1
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 5.5e-09 67.0 435 24.8
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 5.5e-09 67.0 364 24.7
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 7.2e-09 66.6 364 25.3
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 7.2e-09 66.6 364 26.1
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 7.2e-09 66.6 382 24.9
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 9.5e-09 66.2 364 25.5
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 9.5e-09 66.2 385 24.9
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 1.2e-08 65.9 387 25.1
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 1.2e-08 65.9 384 24.5
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 1.6e-08 65.5 366 24.9
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 1.6e-08 65.5 363 25.6
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 2.8e-08 64.7 363 25.6
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 2.8e-08 64.7 363 25.3
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 2.8e-08 64.7 490 23.1
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 3.6e-08 64.3 387 24.8
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 3.6e-08 64.3 357 26.1
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 3.6e-08 64.3 369 25.5
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 3.6e-08 64.3 373 24.4
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 4.7e-08 63.9 366 24.6
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 4.7e-08 63.9 360 23.9
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 4.7e-08 63.9 369 25.2
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 4.7e-08 63.9 364 25.5
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 6.1e-08 63.5 364 25.3
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 6.1e-08 63.5 373 24.7
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 6.1e-08 63.5 380 23.9
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 6.1e-08 63.5 437 24.5
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 8.0e-08 63.2 364 24.7
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 8.0e-08 63.2 444 24.5
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 8.0e-08 63.2 360 24.7
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 8.0e-08 63.2 362 23.5
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 1.0e-07 62.8 364 25.3
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 1.0e-07 62.8 363 25.1
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 1.0e-07 62.8 363 24.5
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 1.0e-07 62.8 384 23.4
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 1.0e-07 62.8 445 22.7
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.4e-07 62.4 364 24.7
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 1.4e-07 62.4 386 22.8
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 2.3e-07 61.6 360 24.4
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.3e-07 61.6 363 24.0
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 3.0e-07 61.2 400 24.0
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 3.0e-07 61.2 366 24.6
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 5.2e-07 60.5 436 24.3
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 6.8e-07 60.1 494 23.7
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 8.8e-07 59.7 360 25.0
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 8.8e-07 59.7 445 24.0
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 8.8e-07 59.7 386 24.6
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 1.2e-06 59.3 362 24.9
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 2.0e-06 58.5 366 23.8
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 2.6e-06 58.2 363 22.6
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 3.4e-06 57.8 363 24.2
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 4.4e-06 57.4 364 24.2
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 7.5e-06 56.6 381 23.9


User provided reference genes

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