Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 2.4e-36 154.8 72 100.0
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.4e-36 154.8 72 100.0
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.4e-36 154.8 72 100.0
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.4e-36 154.8 72 100.0
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.4e-36 154.8 72 100.0
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 7.1e-36 153.3 72 98.6
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 7.1e-36 153.3 72 98.6
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 1.2e-35 152.5 72 98.6
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 1.6e-35 152.1 72 97.2
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 1.6e-35 152.1 72 97.2
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 2.1e-35 151.8 72 98.6
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 2.1e-35 151.8 72 98.6
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 2.7e-35 151.4 72 97.2
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 2.7e-35 151.4 72 97.2
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 2.7e-35 151.4 72 97.2
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 97.2
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 97.2
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 4.6e-35 150.6 71 95.8
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 97.2
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 6.0e-35 150.2 72 95.8
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 6.0e-35 150.2 72 95.8
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 6.0e-35 150.2 72 95.8
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 95.8
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 95.8
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 7.9e-35 149.8 69 98.6
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 95.8
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 95.8
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 95.8
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 1.0e-34 149.4 72 94.4
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 1.0e-34 149.4 72 94.4
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 1.0e-34 149.4 72 95.8
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 1.0e-34 149.4 72 95.8
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 1.3e-34 149.1 69 97.1
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 1.3e-34 149.1 69 97.1
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 93.1
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 95.8
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 95.8
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 3.0e-34 147.9 69 97.1
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 3.0e-34 147.9 69 97.1
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 95.8
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 95.8
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 95.8
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 95.8
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 95.8
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 95.8
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 94.4
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 94.4
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 95.8
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 95.8
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 94.4
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 94.4
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 6.7e-34 146.7 71 91.5
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.1e-33 146.0 69 94.2
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.1e-33 146.0 69 94.2
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 93.1
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 93.1
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 93.1
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 1.1e-33 146.0 69 94.2
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 1.1e-33 146.0 71 91.5
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 1.1e-33 146.0 71 93.0
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 1.1e-33 146.0 71 93.0
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 1.5e-33 145.6 71 91.5
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 93.1
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 1.9e-33 145.2 69 95.7
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 93.1
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 93.1
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 93.1
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 2.5e-33 144.8 69 94.2
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 2.5e-33 144.8 69 95.7
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 3.3e-33 144.4 69 95.7
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 93.1
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 93.1
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 93.1
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 93.1
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 93.1
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 4.3e-33 144.1 69 94.2
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 91.7
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 5.6e-33 143.7 84 84.5
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 7.4e-33 143.3 69 92.8
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 3.7e-32 141.0 72 90.3
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 4.8e-32 140.6 71 87.3
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 4.8e-32 140.6 71 87.3
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 4.8e-32 140.6 71 90.1
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 6.2e-32 140.2 71 88.7
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 8.1e-32 139.8 69 89.9
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 8.1e-32 139.8 64 98.4
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 8.1e-32 139.8 64 98.4
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 8.1e-32 139.8 64 98.4
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 1.1e-31 139.4 63 100.0
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 1.1e-31 139.4 63 100.0
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 1.1e-31 139.4 63 100.0
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 1.4e-31 139.0 64 96.9
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 1.4e-31 139.0 64 96.9
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 1.8e-31 138.7 64 96.9
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 2.4e-31 138.3 63 98.4
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 2.4e-31 138.3 64 96.9
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 3.1e-31 137.9 63 98.4
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 5.3e-31 137.1 69 91.3
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 9.0e-31 136.3 64 95.3
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 1.2e-30 136.0 85 77.6
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.2e-30 136.0 72 90.3
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.5e-30 135.6 64 95.3
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.5e-30 135.6 67 94.0
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.5e-30 135.6 67 94.0
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 2.0e-30 135.2 63 96.8
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 3.4e-30 134.4 64 95.3
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 5.8e-30 133.7 69 91.3
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 5.8e-30 133.7 64 93.8
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 5.8e-30 133.7 65 92.3
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 5.8e-30 133.7 64 93.8
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 7.6e-30 133.3 101 67.3
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 7.6e-30 133.3 68 88.2
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 7.6e-30 133.3 64 93.8
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 1.0e-29 132.9 67 86.6
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 4.9e-29 130.6 67 88.1
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 8.4e-29 129.8 71 81.7
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 1.6e-27 125.6 121 56.2
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.3e-26 121.7 57 98.2
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 6.7e-26 120.2 57 96.5
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 1.9e-25 118.6 57 96.5
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 5.7e-25 117.1 59 88.1
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 7.4e-25 116.7 56 92.9
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 1.3e-24 115.9 72 77.8
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 3.7e-24 114.4 53 94.3
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.3e-23 110.5 53 92.5
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.3e-23 110.5 53 92.5
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 1.5e-22 109.0 120 50.0
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 3.4e-22 107.8 53 88.7
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 3.2e-20 101.3 72 75.0
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 6.7e-18 93.6 42 97.6
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 6.7e-18 93.6 42 97.6
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 6.3e-16 87.0 71 57.7
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 2.4e-15 85.1 62 56.5
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 4.5e-14 80.9 88 50.0
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 4.5e-14 80.9 46 80.4
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 2.9e-13 78.2 33 100.0
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 1.4e-12 75.9 32 100.0
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 1.4e-12 75.9 32 100.0
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 1.9e-12 75.5 55 70.9
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 5.5e-12 73.9 32 96.9
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 1.2e-11 72.8 32 93.8
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 2.7e-11 71.6 32 93.8
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-11 70.5 32 87.5
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.0e-10 68.2 32 96.9
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.0e-10 68.2 32 96.9
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 2.0e-09 65.5 40 75.0
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 5.7e-09 63.9 32 84.4


User provided reference genes

Program Settings