Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2425 Fragaria x ananassa HOM05D000822 ORTHO05D016844 3.8e-35 151.0 77 100.0
FAN17G2105 Fragaria x ananassa HOM05D000822 ORTHO05D002021 4.9e-35 150.6 76 100.0
FvH4_4g13760 Fragaria vesca HOM05D000822 ORTHO05D002021 1.1e-34 149.4 76 98.7
FAN12G1032 Fragaria x ananassa HOM05D000822 ORTHO05D002021 1.1e-34 149.4 76 98.7
FAN22G2267 Fragaria x ananassa HOM05D000822 ORTHO05D002021 1.2e-33 146.0 76 97.4
FAN12G3168 Fragaria x ananassa HOM05D000822 ORTHO05D002021 5.1e-32 140.6 76 92.1
FAN12G0569 Fragaria x ananassa HOM05D000822 ORTHO05D016844 3.3e-31 137.9 71 100.0
FAN07G0634 Fragaria x ananassa HOM05D000822 ORTHO05D002021 9.6e-31 136.3 76 90.8
FAN07G1833 Fragaria x ananassa HOM05D000822 ORTHO05D002021 9.6e-31 136.3 76 90.8
RcHm_v2.0_Chr2g0166231 Rosa chinensis HOM05D000822 ORTHO05D002021 8.1e-30 133.3 76 88.2
RcHm_v2.0_Chr4g0442751 Rosa chinensis HOM05D000822 ORTHO05D002021 1.3e-27 125.9 76 82.9
FvH4_4g33449 Fragaria vesca HOM05D000002 ORTHO05D000001 2.9e-27 124.8 76 84.2
FAN22G1097 Fragaria x ananassa HOM05D000822 ORTHO05D016844 2.9e-27 124.8 76 84.2
FAN17G2202 Fragaria x ananassa HOM05D000822 ORTHO05D002021 4.2e-26 120.9 77 83.1
FvH4_4g33445 Fragaria vesca HOM05D000822 ORTHO05D002021 9.3e-26 119.8 76 81.6
FAN22G1969 Fragaria x ananassa HOM05D000822 ORTHO05D002021 9.3e-26 119.8 76 81.6
FAN07G2819 Fragaria x ananassa HOM05D000822 ORTHO05D002021 2.7e-25 118.2 76 82.9
Prupe.1G132200 Prunus persica HOM05D000822 ORTHO05D002021 2.4e-21 105.1 76 67.1
MD13G1019400 Malus domestica HOM05D000822 ORTHO05D002021 7.6e-20 100.1 77 70.1
MD13G1041200 Malus domestica HOM05D000822 ORTHO05D002021 3.8e-19 97.8 79 69.6
MD16G1017600 Malus domestica HOM05D000822 ORTHO05D002021 8.5e-19 96.7 73 68.5
Potri.010G104900 Populus trichocarpa HOM05D000822 ORTHO05D002021 1.1e-18 96.3 77 61.0
Potri.010G105200 Populus trichocarpa HOM05D000822 ORTHO05D002021 1.1e-18 96.3 77 61.0
MD16G1017500 Malus domestica HOM05D000822 ORTHO05D002021 2.5e-18 95.1 72 66.7
Prupe.1G332600 Prunus persica HOM05D000822 ORTHO05D002021 1.2e-17 92.8 76 61.8
Prupe.1G334500 Prunus persica HOM05D000822 ORTHO05D002021 3.6e-17 91.3 76 60.5
Sabra10G0077300 Salix brachista HOM05D000822 ORTHO05D002021 3.6e-17 91.3 77 61.0
CANSAT78G2138 Cannabis sativa HOM05D000822 ORTHO05D002021 3.0e-16 88.2 74 60.8
Manes.17G084733 Manihot esculenta HOM05D000822 ORTHO05D002021 4.3e-15 84.3 76 57.9
Manes.17G084800 Manihot esculenta HOM05D000822 ORTHO05D002021 2.8e-14 81.6 76 56.6
FvH4_4g33446 Fragaria vesca HOM05D056006 ORTHO05D046452 8.2e-14 80.1 50 82.0
Lj6A736G83 Lonicera japonica HOM05D000822 ORTHO05D002021 6.9e-13 77.0 76 53.9
Prupe.4G078900 Prunus persica HOM05D000822 ORTHO05D002021 6.9e-13 77.0 79 55.7
Lj6C529T7 Lonicera japonica HOM05D000822 ORTHO05D002021 9.1e-13 76.6 76 50.0
TWI53G2103 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 9.1e-13 76.6 76 51.3
Prupe.4G078800 Prunus persica HOM05D000822 ORTHO05D002021 2.6e-12 75.1 79 57.0
Cpa.g.sc2.178 Carica papaya HOM05D000822 ORTHO05D014097 4.5e-12 74.3 76 51.3
THA.LOC104805089 Tarenaya hassleriana HOM05D000822 ORTHO05D002021 4.5e-12 74.3 76 50.0
Lj6A529G69 Lonicera japonica HOM05D000822 ORTHO05D002021 5.9e-12 73.9 76 48.7
PGR142G2590 Punica granatum HOM05D000822 ORTHO05D002021 7.7e-12 73.6 76 53.9
AL7G45360 Arabidopsis lyrata HOM05D000822 ORTHO05D002021 1.0e-11 73.2 76 48.7
Rhsim09G0088600 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.0e-11 73.2 76 50.0
TWI53G0228 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 1.3e-11 72.8 76 51.3
CsaV3_5G011200 Cucumis sativus L. HOM05D000822 ORTHO05D002021 2.2e-11 72.0 76 50.0
Hma1.2p1_0853F.1_g228680 Hydrangea macrophylla HOM05D000822 ORTHO05D002021 2.2e-11 72.0 76 50.0
MELO3C026815.2 Cucumis melo HOM05D000822 ORTHO05D002021 2.9e-11 71.6 76 50.0
GSVIVG01011643001 Vitis vinifera HOM05D000822 ORTHO05D002021 5.0e-11 70.9 76 42.1
AL1G26820 Arabidopsis lyrata HOM05D000822 ORTHO05D002021 8.5e-11 70.1 76 47.4
Manes.15G135600 Manihot esculenta HOM05D000822 ORTHO05D002021 1.4e-10 69.3 76 47.4
TAR629G3417 Trochodendron aralioides HOM05D000822 ORTHO05D002021 1.9e-10 68.9 76 46.1
Aa31LG1G300 Aethionema arabicum HOM05D000822 ORTHO05D002021 2.5e-10 68.6 76 47.4
CANSAT78G0909 Cannabis sativa HOM05D000822 ORTHO05D002021 2.5e-10 68.6 76 48.7
ClCG07G005340 Citrullus lanatus HOM05D000822 ORTHO05D002021 2.5e-10 68.6 76 48.7
CSS0036414 Camellia sinensis var. sinensis HOM05D000822 ORTHO05D002021 4.2e-10 67.8 76 47.4
PGR142G0740 Punica granatum HOM05D000822 ORTHO05D002021 4.2e-10 67.8 76 50.0
Eucgr.B02678 Eucalyptus grandis HOM05D000822 ORTHO05D002021 5.5e-10 67.4 76 46.1
Actinidia36616 Actinidia chinensis HOM05D000822 ORTHO05D002021 7.2e-10 67.0 76 48.7
Hund15690 Selenicereus undatus HOM05D000822 ORTHO05D002021 7.2e-10 67.0 76 46.1
COL.COLO4_27641 Corchorus olitorius HOM05D000822 ORTHO05D002021 9.4e-10 66.6 76 46.1
FvH4_4g33391 Fragaria vesca HOM05D000822 ORTHO05D002021 9.4e-10 66.6 76 44.7
FAN12G1113 Fragaria x ananassa HOM05D000822 ORTHO05D002021 9.4e-10 66.6 76 44.7
Cpa.g.sc2.183 Carica papaya HOM05D000822 ORTHO05D002021 1.2e-09 66.2 76 44.7
Lj6A528T46 Lonicera japonica HOM05D000822 ORTHO05D002021 1.2e-09 66.2 76 46.1
Ah.06g191500 Amaranthus hybridus HOM05D000822 ORTHO05D002021 1.6e-09 65.9 77 48.1
MSTRG.768 Avicennia marina HOM05D000822 ORTHO05D002021 1.6e-09 65.9 76 48.7
Sabra08G0103900 Salix brachista HOM05D000822 ORTHO05D002021 1.6e-09 65.9 76 44.7
GSVIVG01011645001 Vitis vinifera HOM05D000822 ORTHO05D002021 1.6e-09 65.9 74 43.2
Duzib251G0241 Durio zibethinus HOM05D000822 ORTHO05D002021 2.1e-09 65.5 76 44.7
Eucgr.B02681 Eucalyptus grandis HOM05D000822 ORTHO05D002021 2.1e-09 65.5 76 46.1
Potri.008G136100 Populus trichocarpa HOM05D000822 ORTHO05D002021 2.1e-09 65.5 76 46.1
RcHm_v2.0_Chr4g0442681 Rosa chinensis HOM05D000822 ORTHO05D002021 2.1e-09 65.5 76 47.4
MBI19_g36760_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 2.7e-09 65.1 73 47.9
AT1G14790 Arabidopsis thaliana HOM05D000822 ORTHO05D002021 3.6e-09 64.7 76 46.1
Migut.L01176 Erythranthe guttata HOM05D000822 ORTHO05D002021 3.6e-09 64.7 76 47.4
Rhsim09G0088800 Rhododendron simsii HOM05D000822 ORTHO05D002021 4.6e-09 64.3 74 41.9
EL10Ac2g02895 Beta vulgaris HOM05D000822 ORTHO05D002021 6.1e-09 63.9 72 43.1
EL10Ac2g02898 Beta vulgaris HOM05D000822 ORTHO05D002021 6.1e-09 63.9 72 43.1
CANSAT78G2101 Cannabis sativa HOM05D000822 ORTHO05D002021 6.1e-09 63.9 72 45.8
Lsat_1_v5_gn_8_35321 Lactuca sativa HOM05D000822 ORTHO05D002021 6.1e-09 63.9 76 43.4
Lj6C736G19 Lonicera japonica HOM05D000822 ORTHO05D002021 6.1e-09 63.9 76 46.1
PGR142G0514 Punica granatum HOM05D000822 ORTHO05D002021 6.1e-09 63.9 76 50.0
QL12p003120 Quercus lobata HOM05D000822 ORTHO05D002021 6.1e-09 63.9 76 44.7
arahy.Tifrunner.gnm1.ann1.TJ3454 Arachis hypogaea HOM05D000822 ORTHO05D002021 7.9e-09 63.5 76 43.4
Glyma.02G086100 Glycine max HOM05D000822 ORTHO05D002021 7.9e-09 63.5 78 43.6
RhsimUnG0113800 Rhododendron simsii HOM05D000822 ORTHO05D002021 7.9e-09 63.5 76 46.1
CiPaw.06G054400 Carya illinoinensis HOM05D000822 ORTHO05D002021 1.0e-08 63.2 76 46.1
MBI19_g26461_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 1.0e-08 63.2 72 45.8
MBI19_g26463_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 1.0e-08 63.2 72 45.8
MBI19_g47006_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 1.0e-08 63.2 72 50.0
Sc10g0004080 Simmondsia chinensis HOM05D000822 ORTHO05D002021 1.0e-08 63.2 76 44.7
arahy.Tifrunner.gnm1.ann1.92BDQ3 Arachis hypogaea HOM05D000822 ORTHO05D002021 1.4e-08 62.8 76 43.4
Duzib251G0784 Durio zibethinus HOM05D000822 ORTHO05D002021 1.4e-08 62.8 77 46.8
QL12p003141 Quercus lobata HOM05D000822 ORTHO05D002021 1.4e-08 62.8 76 43.4
TAR371G0134 Trochodendron aralioides HOM05D000822 ORTHO05D002021 1.4e-08 62.8 78 46.2
vmacro13549 Vaccinium macrocarpon HOM05D000822 ORTHO05D002021 1.4e-08 62.8 76 44.7
BraA06t24263Z Brassica rapa HOM05D000822 ORTHO05D002021 1.8e-08 62.4 76 46.1
ECA232G0215 Erigeron canadensis HOM05D000822 ORTHO05D002021 1.8e-08 62.4 76 44.7
Gohir.A09G026750 Gossypium hirsutum HOM05D000822 ORTHO05D002021 1.8e-08 62.4 76 47.4
Lj2g0008190 Lotus japonicus HOM05D000822 ORTHO05D002021 1.8e-08 62.4 76 42.1
RcHm_v2.0_Chr4g0442701 Rosa chinensis HOM05D000822 ORTHO05D002021 1.8e-08 62.4 77 44.2
TWI74G0257 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 1.8e-08 62.4 76 50.0
Duzib248G0041 Durio zibethinus HOM05D000822 ORTHO05D002021 2.3e-08 62.0 76 43.4
Eucgr.G02090 Eucalyptus grandis HOM05D000822 ORTHO05D002021 2.3e-08 62.0 76 42.1
Eucgr.G02092 Eucalyptus grandis HOM05D000822 ORTHO05D002021 2.3e-08 62.0 76 43.4
MBI19_g33821_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D016844 2.3e-08 62.0 72 47.2
Sed0015641 Sechium edule HOM05D000822 ORTHO05D002021 2.3e-08 62.0 77 49.4
A06p10850 Brassica napus HOM05D000822 ORTHO05D002021 3.0e-08 61.6 76 46.1
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 3.9e-08 61.2 76 44.7
BcaC05g25400 Brassica carinata HOM05D000822 ORTHO05D002021 3.9e-08 61.2 76 44.7
BolC5t30018H Brassica oleracea HOM05D000822 ORTHO05D002021 3.9e-08 61.2 76 44.7
BolC5t30023H Brassica oleracea HOM05D000822 ORTHO05D016844 3.9e-08 61.2 76 44.7
Nitab4.5_0009221g0010 Nicotiana tabacum HOM05D000822 ORTHO05D002021 3.9e-08 61.2 76 48.7
TAR629G0195 Trochodendron aralioides HOM05D000822 ORTHO05D002021 3.9e-08 61.2 76 40.8
vmacro13550 Vaccinium macrocarpon HOM05D000822 ORTHO05D002021 3.9e-08 61.2 76 43.4
Actinidia12401 Actinidia chinensis HOM05D000822 ORTHO05D002021 5.1e-08 60.8 76 46.1
C05p12740 Brassica napus HOM05D000822 ORTHO05D002021 5.1e-08 60.8 76 44.7
Thhalv10006629m.g Eutrema salsugineum HOM05D000822 ORTHO05D002021 6.7e-08 60.5 76 44.7
FAN07G1419 Fragaria x ananassa HOM05D000822 ORTHO05D002021 6.7e-08 60.5 76 42.1
PGR142G2922 Punica granatum HOM05D000822 ORTHO05D002021 6.7e-08 60.5 76 46.1
Sp1g13230 Schrenkiella parvula HOM05D000822 ORTHO05D002021 6.7e-08 60.5 76 46.1
VMungo0464G2119 Vigna mungo HOM05D000822 ORTHO05D002021 6.7e-08 60.5 73 42.5
AUR62030555 Chenopodium quinoa HOM05D000822 ORTHO05D002021 1.1e-07 59.7 77 41.6
QL03p036637 Quercus lobata HOM05D000822 ORTHO05D002021 1.1e-07 59.7 76 39.5
Sopen05g003390 Solanum pennellii HOM05D000822 ORTHO05D002021 1.1e-07 59.7 76 46.1
CANSAT64G1815 Cannabis sativa HOM05D000822 ORTHO05D002021 1.5e-07 59.3 80 46.2
Carub.0001s1459 Capsella rubella HOM05D000822 ORTHO05D002021 1.5e-07 59.3 76 43.4
Cc11_g06940 Coffea canephora HOM05D000822 ORTHO05D002021 1.5e-07 59.3 76 46.1
MD13G1041300 Malus domestica HOM05D000822 ORTHO05D002021 1.5e-07 59.3 76 44.7
Rhsim07G0040500 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.5e-07 59.3 76 44.7
Gohir.D04G188400 Gossypium hirsutum HOM05D000822 ORTHO05D002021 2.0e-07 58.9 76 46.1
Cc11_g06950 Coffea canephora HOM05D000822 ORTHO05D002021 2.6e-07 58.5 76 46.1
MD16G1017200 Malus domestica HOM05D000822 ORTHO05D002021 2.6e-07 58.5 76 43.4
CARHR015330 Cardamine hirsuta HOM05D000822 ORTHO05D002021 3.3e-07 58.2 76 43.4
Cc11_g06960 Coffea canephora HOM05D000822 ORTHO05D002021 3.3e-07 58.2 76 46.1
Rhsim07G0063900 Rhododendron simsii HOM05D000822 ORTHO05D002021 3.3e-07 58.2 77 45.5
Solyc05g007510.4 Solanum lycopersicum HOM05D000822 ORTHO05D002021 3.3e-07 58.2 76 44.7
Dinv26358 Davidia involucrata HOM05D000822 ORTHO05D002021 4.4e-07 57.8 74 45.9
Phvul.003G016600 Phaseolus vulgaris HOM05D000822 ORTHO05D002021 4.4e-07 57.8 76 40.8
CsaV3_5G011210 Cucumis sativus L. HOM05D000822 ORTHO05D002021 5.7e-07 57.4 76 42.1
Gorai.012G183900 Gossypium raimondii HOM05D000822 ORTHO05D002021 5.7e-07 57.4 76 44.7
PGR142G4183 Punica granatum HOM05D000822 ORTHO05D002021 5.7e-07 57.4 76 44.7
Rhsim09G0088700 Rhododendron simsii HOM05D000822 ORTHO05D002021 5.7e-07 57.4 61 49.2
ECA233G5534 Erigeron canadensis HOM05D000822 ORTHO05D002021 7.4e-07 57.0 76 40.8
Cfa015040 Carpinus fangiana HOM05D000822 ORTHO05D002021 9.7e-07 56.6 76 43.4
AUR62018332 Chenopodium quinoa HOM05D000822 ORTHO05D002021 9.7e-07 56.6 77 40.3
ClCG07G005370 Citrullus lanatus HOM05D000822 ORTHO05D002021 9.7e-07 56.6 76 40.8
Cc11_g06970 Coffea canephora HOM05D000822 ORTHO05D002021 9.7e-07 56.6 76 44.7
Haze_10858 Corylus avellana HOM05D000822 ORTHO05D002021 9.7e-07 56.6 76 43.4
Nitab4.5_0000654g0010 Nicotiana tabacum HOM05D000822 ORTHO05D002021 9.7e-07 56.6 76 44.7
Prupe.1G334600 Prunus persica HOM05D000822 ORTHO05D002021 9.7e-07 56.6 76 43.4
COL.COLO4_27640 Corchorus olitorius HOM05D000822 ORTHO05D002021 1.3e-06 56.2 76 44.7
Lalb_Chr10g0095661 Lupinus albus HOM05D000822 ORTHO05D002021 1.3e-06 56.2 78 38.5
QL03p036623 Quercus lobata HOM05D000822 ORTHO05D016844 1.3e-06 56.2 76 38.2
PGSC0003DMG400031261 Solanum tuberosum HOM05D000822 ORTHO05D002021 1.3e-06 56.2 76 44.7
PGSC0003DMG400031269 Solanum tuberosum HOM05D000822 ORTHO05D002021 1.3e-06 56.2 76 44.7
MELO3C005257.2 Cucumis melo HOM05D000822 ORTHO05D002021 1.7e-06 55.8 79 39.2
HanXRQChr08g0223631 Helianthus annuus HOM05D000822 ORTHO05D002021 1.7e-06 55.8 77 41.6
Medtr1g032630 Medicago truncatula HOM05D000822 ORTHO05D002021 1.7e-06 55.8 74 37.8
QL03p036529 Quercus lobata HOM05D000822 ORTHO05D002021 1.7e-06 55.8 76 40.8
VMungo1215G2384 Vigna mungo HOM05D000822 ORTHO05D002021 1.7e-06 55.8 76 36.8
CsaV3_5G027970 Cucumis sativus L. HOM05D000822 ORTHO05D002021 2.8e-06 55.1 79 39.2
CsaV3_5G028230 Cucumis sativus L. HOM05D000822 ORTHO05D002021 2.8e-06 55.1 79 39.2
Oeu044001.1 Olea europaea HOM05D000822 ORTHO05D002021 2.8e-06 55.1 76 39.5
Sed0005466 Sechium edule HOM05D000822 ORTHO05D002021 2.8e-06 55.1 76 36.8
Sed0009745 Sechium edule HOM05D000822 ORTHO05D002021 2.8e-06 55.1 76 36.8
MBI19_g36754_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 3.7e-06 54.7 67 47.8
SGA_v2.0_scaffold16G07805 Striga asiatica HOM05D000822 ORTHO05D002021 3.7e-06 54.7 76 44.7
ClCG01G006600 Citrullus lanatus HOM05D000822 ORTHO05D002021 4.8e-06 54.3 77 40.3
VMungo1215G0207 Vigna mungo HOM05D000822 ORTHO05D002021 4.8e-06 54.3 76 38.2
MELO3C005284.2 Cucumis melo HOM05D000822 ORTHO05D002021 6.3e-06 53.9 79 38.0
Sed0015093 Sechium edule HOM05D000822 ORTHO05D002021 6.3e-06 53.9 76 36.8
unitig_22.g6489 Utricularia gibba HOM05D000822 ORTHO05D002021 6.3e-06 53.9 76 40.8
HPP92_009687 Vanilla planifolia HOM05D000822 ORTHO05D002021 6.3e-06 53.9 73 37.0
Ca_12532_v3 Cicer arietinum L. HOM05D000822 ORTHO05D002021 8.2e-06 53.5 76 38.2
Medtr1g032590 Medicago truncatula HOM05D000822 ORTHO05D002021 8.2e-06 53.5 63 44.4
PSO063G0843 Papaver somniferum HOM05D000822 ORTHO05D002021 8.2e-06 53.5 80 38.8


User provided reference genes

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