Gene: PGSC0003DMG400031269
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400031269
- Transcript Identifier PGSC0003DMT400080319
- Gene Type Coding gene
- Location ST4.03ch05 : 4996986-5003711 : negative
Gene Family Information
- ID HOM05D000822
- #Genes/#Species 723/96
- Phylogenetic origin
- ID ORTHO05D002021
- #Genes/#Species 326/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- pacid 37445463
- id PGSC0003DMG400031269.v4.03
- uniprot M1D3B2
Descriptions
- Description RNA-dependent RNA-polymerase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030422 | IBA | GOA Database | production of siRNA involved in RNA interference | |
| GO:0010025 | ISO | PLAZA Integrative Orthology | wax biosynthetic process | AT1G14790 |
| GO:0060148 | ISO | PLAZA Integrative Orthology | positive regulation of posttranscriptional gene silencing | AT1G14790 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT4G11130 |
| GO:0009615 | ISO | PLAZA Integrative Orthology | response to virus | AT1G14790 |
| GO:0009751 | ISO | PLAZA Integrative Orthology | response to salicylic acid | AT1G14790 |
| GO:0010495 | ISO | PLAZA Integrative Orthology | long-distance posttranscriptional gene silencing | AT4G11130 |
| GO:0016458 | ISO | PLAZA Integrative Orthology | gene silencing | AT4G11130 |
| GO:0070919 | IBA | GOA Database | production of siRNA involved in chromatin silencing by small RNA | |
| GO:0031047 | IEA | GOA Database | gene silencing by RNA | |
| GO:0001172 | IEA | GOA Database | transcription, RNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G11130 |
| GO:0003968 | IBA IEA | GOA Database | RNA-directed 5'-3' RNA polymerase activity | |
| GO:0003968 | IEA | InterPro | RNA-directed 5'-3' RNA polymerase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT4G11130 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G11130 |
| GO:0031380 | IBA | GOA Database | nuclear RNA-directed RNA polymerase complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007855 | RNA-dependent RNA polymerase, eukaryotic-type |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |